data_7UXU # _model_server_result.job_id Qajn6QwzcXkgqVhuVnxkfg _model_server_result.datetime_utc '2024-11-16 16:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7UXU # _exptl.entry_id 7UXU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 686.482 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UXU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C24 H30 N7 O13 P2 1' _chem_comp.formula_weight 686.482 _chem_comp.id 1O4 _chem_comp.mon_nstd_flag . _chem_comp.name '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C14 1O4 sing 1 n n N3 C14 1O4 doub 2 n y N3 C13 1O4 sing 3 n y C14 C11 1O4 sing 4 n y C13 N2 1O4 doub 5 n y C11 N1 1O4 sing 6 n y C11 C12 1O4 doub 7 n y N1 C10 1O4 doub 8 n y N2 C12 1O4 sing 9 n y C12 N 1O4 sing 10 n y C10 N 1O4 sing 11 n y N C9 1O4 sing 12 n n O5 C8 1O4 sing 13 n n C9 C8 1O4 sing 14 n n C9 O4 1O4 sing 15 n n C19 C18 1O4 doub 16 n y C19 C20 1O4 sing 17 n y C8 C7 1O4 sing 18 n n C18 C17 1O4 sing 19 n y O6 C7 1O4 sing 20 n n O4 C6 1O4 sing 21 n n C20 C21 1O4 doub 22 n y C7 C6 1O4 sing 23 n n C17 N6 1O4 sing 24 n n C17 C16 1O4 doub 25 n y C6 C5 1O4 sing 26 n n C21 C16 1O4 sing 27 n y C21 C22 1O4 sing 28 n y C16 C15 1O4 sing 29 n y O3 C5 1O4 sing 30 n n O3 P1 1O4 sing 31 n n C22 C23 1O4 doub 32 n y O2 P1 1O4 doub 33 n n C15 N5 1O4 doub 34 n y P1 O7 1O4 sing 35 n n P1 O1 1O4 sing 36 n n C23 N5 1O4 sing 37 n y N5 C 1O4 sing 38 n n O1 P 1O4 sing 39 n n C C1 1O4 sing 40 n n C O10 1O4 sing 41 n n C1 O12 1O4 sing 42 n n C1 C2 1O4 sing 43 n n P O9 1O4 doub 44 n n P O 1O4 sing 45 n n P O8 1O4 sing 46 n n O10 C3 1O4 sing 47 n n O C4 1O4 sing 48 n n C4 C3 1O4 sing 49 n n C3 C2 1O4 sing 50 n n C2 O11 1O4 sing 51 n n C8 H6 1O4 sing 52 n n C5 H51 1O4 sing 53 n n C5 H52 1O4 sing 54 n n C6 H4 1O4 sing 55 n n N6 HN62 1O4 sing 56 n n N6 HN61 1O4 sing 57 n n C2 H2 1O4 sing 58 n n C4 H42 1O4 sing 59 n n C4 H41 1O4 sing 60 n n C H 1O4 sing 61 n n C1 H1 1O4 sing 62 n n C10 H10 1O4 sing 63 n n C13 H13 1O4 sing 64 n n C15 H15 1O4 sing 65 n n C18 H18 1O4 sing 66 n n C19 H19 1O4 sing 67 n n C20 H20 1O4 sing 68 n n C22 H22 1O4 sing 69 n n C23 H23 1O4 sing 70 n n C3 H3 1O4 sing 71 n n C7 H5 1O4 sing 72 n n C9 H7 1O4 sing 73 n n N4 HN41 1O4 sing 74 n n N4 HN42 1O4 sing 75 n n O11 HO11 1O4 sing 76 n n O12 HO12 1O4 sing 77 n n O5 HO5 1O4 sing 78 n n O6 HO6 1O4 sing 79 n n O7 H8 1O4 sing 80 n n O8 H9 1O4 sing 81 n n # _atom_sites.entry_id 7UXU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1O4 A 1 301 301 1O4 3AD . F 2 1O4 B 1 301 301 1O4 3AD . G 2 1O4 C 1 301 301 1O4 3AD . H 2 1O4 D 1 301 301 1O4 3AD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 1O4 . . . E 2 113.461 134.284 106.485 1 31.54 ? C8 1O4 301 A 1 HETATM 2 C C5 1O4 . . . E 2 111.739 133.222 103.539 1 31.26 ? C5 1O4 301 A 1 HETATM 3 C C6 1O4 . . . E 2 111.664 133.733 104.956 1 27.66 ? C6 1O4 301 A 1 HETATM 4 N N6 1O4 . . . E 2 108 128.616 104.16 1 34.11 ? N6 1O4 301 A 1 HETATM 5 N N1 1O4 . . . E 2 114.569 130.571 108.378 1 33.64 ? N1 1O4 301 A 1 HETATM 6 C C2 1O4 . . . E 2 109.935 127.88 98.492 1 35.17 ? C2 1O4 301 A 1 HETATM 7 N N3 1O4 . . . E 2 111.937 129.913 110.904 1 29.83 ? N3 1O4 301 A 1 HETATM 8 C C4 1O4 . . . E 2 111.404 129.87 99.055 1 29.43 ? C4 1O4 301 A 1 HETATM 9 N N 1O4 . . . E 2 113.113 132.19 107.818 1 24.89 ? N 1O4 301 A 1 HETATM 10 C C 1O4 . . . E 2 111.203 127.074 100.41 1 33.23 ? C 1O4 301 A 1 HETATM 11 O O 1O4 . . . E 2 112.78 130.296 99.055 1 30.9 ? O 1O4 301 A 1 HETATM 12 C C1 1O4 . . . E 2 109.826 126.965 99.736 1 34.02 ? C1 1O4 301 A 1 HETATM 13 C C10 1O4 . . . E 2 114.302 131.56 107.562 1 24.87 ? C10 1O4 301 A 1 HETATM 14 C C11 1O4 . . . E 2 113.466 130.532 109.218 1 34.75 ? C11 1O4 301 A 1 HETATM 15 C C12 1O4 . . . E 2 112.573 131.54 108.899 1 30.21 ? C12 1O4 301 A 1 HETATM 16 C C13 1O4 . . . E 2 111.2 130.955 110.516 1 26.55 ? C13 1O4 301 A 1 HETATM 17 C C14 1O4 . . . E 2 113.106 129.674 110.274 1 27.08 ? C14 1O4 301 A 1 HETATM 18 C C15 1O4 . . . E 2 110.257 128.148 102.381 1 31.07 ? C15 1O4 301 A 1 HETATM 19 C C16 1O4 . . . E 2 110.395 128.573 103.705 1 35.99 ? C16 1O4 301 A 1 HETATM 20 C C17 1O4 . . . E 2 109.295 128.755 104.606 1 36.97 ? C17 1O4 301 A 1 HETATM 21 C C18 1O4 . . . E 2 109.542 129.061 105.929 1 27.24 ? C18 1O4 301 A 1 HETATM 22 C C19 1O4 . . . E 2 110.831 129.237 106.4 1 22.64 ? C19 1O4 301 A 1 HETATM 23 C C20 1O4 . . . E 2 111.897 129.123 105.561 1 26.7 ? C20 1O4 301 A 1 HETATM 24 C C21 1O4 . . . E 2 111.715 128.785 104.198 1 31.39 ? C21 1O4 301 A 1 HETATM 25 C C22 1O4 . . . E 2 112.8 128.611 103.306 1 32.02 ? C22 1O4 301 A 1 HETATM 26 C C23 1O4 . . . E 2 112.574 128.217 102.033 1 29.57 ? C23 1O4 301 A 1 HETATM 27 C C3 1O4 . . . E 2 111.354 128.451 98.549 1 31.76 ? C3 1O4 301 A 1 HETATM 28 C C7 1O4 . . . E 2 112.675 134.842 105.286 1 28.82 ? C7 1O4 301 A 1 HETATM 29 C C9 1O4 . . . E 2 112.494 133.242 107.021 1 30.42 ? C9 1O4 301 A 1 HETATM 30 N N2 1O4 . . . E 2 111.42 131.81 109.517 1 31.48 ? N2 1O4 301 A 1 HETATM 31 N N4 1O4 . . . E 2 113.842 128.635 110.673 1 18.47 ? N4 1O4 301 A 1 HETATM 32 N N5 1O4 . . . E 2 111.332 127.9 101.624 1 29.23 ? N5 1O4 301 A 1 HETATM 33 O O1 1O4 . . . E 2 113.101 131.905 100.986 1 35.6 ? O1 1O4 301 A 1 HETATM 34 O O10 1O4 . . . E 2 112.064 127.557 99.422 1 35.76 ? O10 1O4 301 A 1 HETATM 35 O O11 1O4 . . . E 2 109.746 127.166 97.277 1 34.13 ? O11 1O4 301 A 1 HETATM 36 O O12 1O4 . . . E 2 109.591 125.612 99.368 1 33.79 ? O12 1O4 301 A 1 HETATM 37 O O2 1O4 . . . E 2 115.208 132.277 102.283 1 29.85 ? O2 1O4 301 A 1 HETATM 38 O O3 1O4 . . . E 2 113.063 132.671 103.371 1 35.41 ? O3 1O4 301 A 1 HETATM 39 O O4 1O4 . . . E 2 111.951 132.654 105.864 1 34.53 ? O4 1O4 301 A 1 HETATM 40 O O5 1O4 . . . E 2 113.706 135.291 107.457 1 38.81 ? O5 1O4 301 A 1 HETATM 41 O O6 1O4 . . . E 2 112 136.047 105.618 1 32.93 ? O6 1O4 301 A 1 HETATM 42 O O7 1O4 . . . E 2 113.779 134.259 101.57 1 34.33 ? O7 1O4 301 A 1 HETATM 43 O O8 1O4 . . . E 2 112.207 132.714 98.794 1 30.8 ? O8 1O4 301 A 1 HETATM 44 O O9 1O4 . . . E 2 114.615 131.918 98.995 1 35.16 ? O9 1O4 301 A 1 HETATM 45 P P 1O4 . . . E 2 113.2 131.795 99.394 1 44.95 ? P 1O4 301 A 1 HETATM 46 P P1 1O4 . . . E 2 113.876 132.852 102.017 1 40.87 ? P1 1O4 301 A 1 HETATM 47 H H6 1O4 . . . E 2 114.413 133.852 106.181 1 31.15 ? H6 1O4 301 A 1 HETATM 48 H H51 1O4 . . . E 2 111.596 133.989 102.78 1 31.33 ? H51 1O4 301 A 1 HETATM 49 H H52 1O4 . . . E 2 110.998 132.445 103.357 1 31.6 ? H52 1O4 301 A 1 HETATM 50 H H4 1O4 . . . E 2 110.648 134.053 105.179 1 30.97 ? H4 1O4 301 A 1 HETATM 51 H HN62 1O4 . . . E 2 107.249 128.501 104.833 1 31.8 ? HN62 1O4 301 A 1 HETATM 52 H HN61 1O4 . . . E 2 107.715 128.618 103.198 1 31.92 ? HN61 1O4 301 A 1 HETATM 53 H H2 1O4 . . . E 2 109.187 128.669 98.558 1 31.91 ? H2 1O4 301 A 1 HETATM 54 H H42 1O4 . . . E 2 110.867 130.538 98.383 1 31.15 ? H42 1O4 301 A 1 HETATM 55 H H41 1O4 . . . E 2 110.94 129.957 100.036 1 31.74 ? H41 1O4 301 A 1 HETATM 56 H H 1O4 . . . E 2 111.581 126.085 100.666 1 30.81 ? H 1O4 301 A 1 HETATM 57 H H1 1O4 . . . E 2 109.008 127.281 100.379 1 31.34 ? H1 1O4 301 A 1 HETATM 58 H H10 1O4 . . . E 2 114.965 131.856 106.751 1 30.72 ? H10 1O4 301 A 1 HETATM 59 H H13 1O4 . . . E 2 110.297 131.123 111.101 1 30.05 ? H13 1O4 301 A 1 HETATM 60 H H15 1O4 . . . E 2 109.274 128.009 101.933 1 31.41 ? H15 1O4 301 A 1 HETATM 61 H H18 1O4 . . . E 2 108.718 129.17 106.632 1 31.12 ? H18 1O4 301 A 1 HETATM 62 H H19 1O4 . . . E 2 110.987 129.469 107.453 1 30.66 ? H19 1O4 301 A 1 HETATM 63 H H20 1O4 . . . E 2 112.908 129.29 105.93 1 30.99 ? H20 1O4 301 A 1 HETATM 64 H H22 1O4 . . . E 2 113.815 128.796 103.655 1 31.61 ? H22 1O4 301 A 1 HETATM 65 H H23 1O4 . . . E 2 113.39 128.15 101.314 1 30.93 ? H23 1O4 301 A 1 HETATM 66 H H3 1O4 . . . E 2 111.84 128.375 97.578 1 30.22 ? H3 1O4 301 A 1 HETATM 67 H H5 1O4 . . . E 2 113.345 135.058 104.455 1 31.49 ? H5 1O4 301 A 1 HETATM 68 H H7 1O4 . . . E 2 111.66 133.665 107.579 1 31.21 ? H7 1O4 301 A 1 HETATM 69 H HN41 1O4 . . . E 2 113.611 128.126 111.516 1 30.32 ? HN41 1O4 301 A 1 HETATM 70 H HN42 1O4 . . . E 2 114.652 128.326 110.146 1 30.31 ? HN42 1O4 301 A 1 HETATM 71 H HO11 1O4 . . . E 2 110.409 126.428 97.26 1 30.95 ? HO11 1O4 301 A 1 HETATM 72 H HO12 1O4 . . . E 2 110.266 125.358 98.686 1 31.18 ? HO12 1O4 301 A 1 HETATM 73 H HO5 1O4 . . . E 2 114.216 134.873 108.199 1 32.7 ? HO5 1O4 301 A 1 HETATM 74 H HO6 1O4 . . . E 2 112.413 136.389 106.454 1 32.36 ? HO6 1O4 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 74 #