data_7UXU
#
_model_server_result.job_id            pbvyskpL8_5TtnbM9zmtiQ 
_model_server_result.datetime_utc      '2024-11-16 16:30:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7uxu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    7UXU 
#
_exptl.entry_id    7UXU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              686.482 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UXU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UXU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C24 H30 N7 O13 P2 1' 
_chem_comp.formula_weight    686.482 
_chem_comp.id                1O4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C14 1O4 sing 1 n n 
N3 C14 1O4 doub 2 n y 
N3 C13 1O4 sing 3 n y 
C14 C11 1O4 sing 4 n y 
C13 N2 1O4 doub 5 n y 
C11 N1 1O4 sing 6 n y 
C11 C12 1O4 doub 7 n y 
N1 C10 1O4 doub 8 n y 
N2 C12 1O4 sing 9 n y 
C12 N 1O4 sing 10 n y 
C10 N 1O4 sing 11 n y 
N C9 1O4 sing 12 n n 
O5 C8 1O4 sing 13 n n 
C9 C8 1O4 sing 14 n n 
C9 O4 1O4 sing 15 n n 
C19 C18 1O4 doub 16 n y 
C19 C20 1O4 sing 17 n y 
C8 C7 1O4 sing 18 n n 
C18 C17 1O4 sing 19 n y 
O6 C7 1O4 sing 20 n n 
O4 C6 1O4 sing 21 n n 
C20 C21 1O4 doub 22 n y 
C7 C6 1O4 sing 23 n n 
C17 N6 1O4 sing 24 n n 
C17 C16 1O4 doub 25 n y 
C6 C5 1O4 sing 26 n n 
C21 C16 1O4 sing 27 n y 
C21 C22 1O4 sing 28 n y 
C16 C15 1O4 sing 29 n y 
O3 C5 1O4 sing 30 n n 
O3 P1 1O4 sing 31 n n 
C22 C23 1O4 doub 32 n y 
O2 P1 1O4 doub 33 n n 
C15 N5 1O4 doub 34 n y 
P1 O7 1O4 sing 35 n n 
P1 O1 1O4 sing 36 n n 
C23 N5 1O4 sing 37 n y 
N5 C 1O4 sing 38 n n 
O1 P 1O4 sing 39 n n 
C C1 1O4 sing 40 n n 
C O10 1O4 sing 41 n n 
C1 O12 1O4 sing 42 n n 
C1 C2 1O4 sing 43 n n 
P O9 1O4 doub 44 n n 
P O 1O4 sing 45 n n 
P O8 1O4 sing 46 n n 
O10 C3 1O4 sing 47 n n 
O C4 1O4 sing 48 n n 
C4 C3 1O4 sing 49 n n 
C3 C2 1O4 sing 50 n n 
C2 O11 1O4 sing 51 n n 
C8 H6 1O4 sing 52 n n 
C5 H51 1O4 sing 53 n n 
C5 H52 1O4 sing 54 n n 
C6 H4 1O4 sing 55 n n 
N6 HN62 1O4 sing 56 n n 
N6 HN61 1O4 sing 57 n n 
C2 H2 1O4 sing 58 n n 
C4 H42 1O4 sing 59 n n 
C4 H41 1O4 sing 60 n n 
C H 1O4 sing 61 n n 
C1 H1 1O4 sing 62 n n 
C10 H10 1O4 sing 63 n n 
C13 H13 1O4 sing 64 n n 
C15 H15 1O4 sing 65 n n 
C18 H18 1O4 sing 66 n n 
C19 H19 1O4 sing 67 n n 
C20 H20 1O4 sing 68 n n 
C22 H22 1O4 sing 69 n n 
C23 H23 1O4 sing 70 n n 
C3 H3 1O4 sing 71 n n 
C7 H5 1O4 sing 72 n n 
C9 H7 1O4 sing 73 n n 
N4 HN41 1O4 sing 74 n n 
N4 HN42 1O4 sing 75 n n 
O11 HO11 1O4 sing 76 n n 
O12 HO12 1O4 sing 77 n n 
O5 HO5 1O4 sing 78 n n 
O6 HO6 1O4 sing 79 n n 
O7 H8 1O4 sing 80 n n 
O8 H9 1O4 sing 81 n n 
#
_atom_sites.entry_id                     7UXU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 1O4 A 1 301 301 1O4 3AD . 
F 2 1O4 B 1 301 301 1O4 3AD . 
G 2 1O4 C 1 301 301 1O4 3AD . 
H 2 1O4 D 1 301 301 1O4 3AD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 1O4 . . . H 2 121.884 104.361 159.977 1 30.45 ? C8 1O4 301 D 1 
HETATM 2 C C5 1O4 . . . H 2 123.856 104.885 157.129 1 30.26 ? C5 1O4 301 D 1 
HETATM 3 C C6 1O4 . . . H 2 123.812 104.304 158.52 1 29.53 ? C6 1O4 301 D 1 
HETATM 4 N N6 1O4 . . . H 2 128.817 108.155 157.778 1 34.37 ? N6 1O4 301 D 1 
HETATM 5 N N1 1O4 . . . H 2 121.941 108.204 161.903 1 32.8 ? N1 1O4 301 D 1 
HETATM 6 C C2 1O4 . . . H 2 127.182 109.44 152.107 1 34.2 ? C2 1O4 301 D 1 
HETATM 7 N N3 1O4 . . . H 2 124.626 108.056 164.453 1 30 ? N3 1O4 301 D 1 
HETATM 8 C C4 1O4 . . . H 2 125.174 107.992 152.689 1 31.1 ? C4 1O4 301 D 1 
HETATM 9 N N 1O4 . . . H 2 122.839 106.213 161.369 1 26.1 ? N 1O4 301 D 1 
HETATM 10 C C 1O4 . . . H 2 126.226 110.594 154.028 1 37.54 ? C 1O4 301 D 1 
HETATM 11 O O 1O4 . . . H 2 123.735 108.021 152.718 1 33.45 ? O 1O4 301 D 1 
HETATM 12 C C1 1O4 . . . H 2 127.569 110.281 153.348 1 33.13 ? C1 1O4 301 D 1 
HETATM 13 C C10 1O4 . . . H 2 121.896 107.169 161.102 1 28.81 ? C10 1O4 301 D 1 
HETATM 14 C C11 1O4 . . . H 2 122.999 107.916 162.752 1 31.8 ? C11 1O4 301 D 1 
HETATM 15 C C12 1O4 . . . H 2 123.55 106.684 162.445 1 29.74 ? C12 1O4 301 D 1 
HETATM 16 C C13 1O4 . . . H 2 125.038 106.849 164.059 1 29.46 ? C13 1O4 301 D 1 
HETATM 17 C C14 1O4 . . . H 2 123.588 108.63 163.812 1 27.47 ? C14 1O4 301 D 1 
HETATM 18 C C15 1O4 . . . H 2 126.808 109.28 155.996 1 32.58 ? C15 1O4 301 D 1 
HETATM 19 C C16 1O4 . . . H 2 126.544 108.906 157.315 1 36.43 ? C16 1O4 301 D 1 
HETATM 20 C C17 1O4 . . . H 2 127.535 108.395 158.217 1 34.65 ? C17 1O4 301 D 1 
HETATM 21 C C18 1O4 . . . H 2 127.197 108.151 159.533 1 30.63 ? C18 1O4 301 D 1 
HETATM 22 C C19 1O4 . . . H 2 125.913 108.367 160 1 29.27 ? C19 1O4 301 D 1 
HETATM 23 C C20 1O4 . . . H 2 124.936 108.81 159.162 1 28.18 ? C20 1O4 301 D 1 
HETATM 24 C C21 1O4 . . . H 2 125.218 109.091 157.803 1 31.56 ? C21 1O4 301 D 1 
HETATM 25 C C22 1O4 . . . H 2 124.236 109.579 156.908 1 30.53 ? C22 1O4 301 D 1 
HETATM 26 C C23 1O4 . . . H 2 124.573 109.885 155.635 1 27.42 ? C23 1O4 301 D 1 
HETATM 27 C C3 1O4 . . . H 2 125.658 109.323 152.173 1 32.4 ? C3 1O4 301 D 1 
HETATM 28 C C7 1O4 . . . H 2 122.519 103.541 158.845 1 29.35 ? C7 1O4 301 D 1 
HETATM 29 C C9 1O4 . . . H 2 123.113 105.009 160.593 1 33.11 ? C9 1O4 301 D 1 
HETATM 30 N N2 1O4 . . . H 2 124.57 106.089 163.069 1 30.56 ? N2 1O4 301 D 1 
HETATM 31 N N4 1O4 . . . H 2 123.195 109.844 164.202 1 21.33 ? N4 1O4 301 D 1 
HETATM 32 N N5 1O4 . . . H 2 125.857 109.837 155.238 1 30.36 ? N5 1O4 301 D 1 
HETATM 33 O O1 1O4 . . . H 2 122.91 106.593 154.636 1 35.7 ? O1 1O4 301 D 1 
HETATM 34 O O10 1O4 . . . H 2 125.258 110.396 153.041 1 37.72 ? O10 1O4 301 D 1 
HETATM 35 O O11 1O4 . . . H 2 127.568 110.065 150.889 1 35.15 ? O11 1O4 301 D 1 
HETATM 36 O O12 1O4 . . . H 2 128.202 111.497 152.976 1 34.63 ? O12 1O4 301 D 1 
HETATM 37 O O2 1O4 . . . H 2 120.8 106.838 155.958 1 31.92 ? O2 1O4 301 D 1 
HETATM 38 O O3 1O4 . . . H 2 122.741 105.793 157.007 1 34.85 ? O3 1O4 301 D 1 
HETATM 39 O O4 1O4 . . . H 2 123.902 105.371 159.484 1 34.87 ? O4 1O4 301 D 1 
HETATM 40 O O5 1O4 . . . H 2 121.23 103.524 160.92 1 33.21 ? O5 1O4 301 D 1 
HETATM 41 O O6 1O4 . . . H 2 122.811 102.213 159.259 1 33.68 ? O6 1O4 301 D 1 
HETATM 42 O O7 1O4 . . . H 2 121.567 104.537 155.184 1 35.88 ? O7 1O4 301 D 1 
HETATM 43 O O8 1O4 . . . H 2 123.527 105.543 152.447 1 33.58 ? O8 1O4 301 D 1 
HETATM 44 O O9 1O4 . . . H 2 121.488 107.056 152.628 1 33 ? O9 1O4 301 D 1 
HETATM 45 P P 1O4 . . . H 2 122.866 106.725 153.042 1 42.32 ? P 1O4 301 D 1 
HETATM 46 P P1 1O4 . . . H 2 121.898 105.898 155.661 1 37.76 ? P1 1O4 301 D 1 
HETATM 47 H H6 1O4 . . . H 2 121.17 105.091 159.598 1 31.39 ? H6 1O4 301 D 1 
HETATM 48 H H51 1O4 . . . H 2 123.769 104.145 156.335 1 31.52 ? H51 1O4 301 D 1 
HETATM 49 H H52 1O4 . . . H 2 124.783 105.431 156.958 1 31.7 ? H52 1O4 301 D 1 
HETATM 50 H H4 1O4 . . . H 2 124.686 103.675 158.683 1 31.56 ? H4 1O4 301 D 1 
HETATM 51 H HN62 1O4 . . . H 2 129.563 108.045 158.458 1 32.07 ? HN62 1O4 301 D 1 
HETATM 52 H HN61 1O4 . . . H 2 129.101 108.076 156.82 1 32.4 ? HN61 1O4 301 D 1 
HETATM 53 H H2 1O4 . . . H 2 127.659 108.463 152.17 1 32 ? H2 1O4 301 D 1 
HETATM 54 H H42 1O4 . . . H 2 125.46 107.189 152.012 1 31.72 ? H42 1O4 301 D 1 
HETATM 55 H H41 1O4 . . . H 2 125.606 107.765 153.663 1 31.9 ? H41 1O4 301 D 1 
HETATM 56 H H 1O4 . . . H 2 126.167 111.649 154.289 1 31.69 ? H 1O4 301 D 1 
HETATM 57 H H1 1O4 . . . H 2 128.255 109.732 153.99 1 31.09 ? H1 1O4 301 D 1 
HETATM 58 H H10 1O4 . . . H 2 121.173 107.075 160.293 1 31.54 ? H10 1O4 301 D 1 
HETATM 59 H H13 1O4 . . . H 2 125.869 106.437 164.63 1 31.52 ? H13 1O4 301 D 1 
HETATM 60 H H15 1O4 . . . H 2 127.791 109.129 155.553 1 31.59 ? H15 1O4 301 D 1 
HETATM 61 H H18 1O4 . . . H 2 127.945 107.781 160.234 1 31.57 ? H18 1O4 301 D 1 
HETATM 62 H H19 1O4 . . . H 2 125.688 108.179 161.049 1 31.23 ? H19 1O4 301 D 1 
HETATM 63 H H20 1O4 . . . H 2 123.92 108.955 159.528 1 30.82 ? H20 1O4 301 D 1 
HETATM 64 H H22 1O4 . . . H 2 123.211 109.707 157.253 1 31.49 ? H22 1O4 301 D 1 
HETATM 65 H H23 1O4 . . . H 2 123.815 110.174 154.909 1 30.76 ? H23 1O4 301 D 1 
HETATM 66 H H3 1O4 . . . H 2 125.214 109.539 151.203 1 30.43 ? H3 1O4 301 D 1 
HETATM 67 H H5 1O4 . . . H 2 121.846 103.479 157.992 1 31.31 ? H5 1O4 301 D 1 
HETATM 68 H H7 1O4 . . . H 2 123.711 104.327 161.195 1 32.3 ? H7 1O4 301 D 1 
HETATM 69 H HN41 1O4 . . . H 2 123.756 110.435 164.787 1 30.75 ? HN41 1O4 301 D 1 
HETATM 70 H HN42 1O4 . . . H 2 122.296 110.215 163.912 1 30.67 ? HN42 1O4 301 D 1 
HETATM 71 H HO11 1O4 . . . H 2 127.153 110.966 150.874 1 31.45 ? HO11 1O4 301 D 1 
HETATM 72 H HO12 1O4 . . . H 2 127.639 111.939 152.29 1 31.48 ? HO12 1O4 301 D 1 
HETATM 73 H HO5 1O4 . . . H 2 120.901 104.104 161.656 1 32.16 ? HO5 1O4 301 D 1 
HETATM 74 H HO6 1O4 . . . H 2 122.257 102.033 160.063 1 31.98 ? HO6 1O4 301 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           74 
#