data_7UY0 # _model_server_result.job_id 4kkGqyYxswsruUJK3PtEYw _model_server_result.datetime_utc '2024-12-01 10:49:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7UY0 # _exptl.entry_id 7UY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UY0 _cell.length_a 49.43 _cell.length_b 112.09 _cell.length_c 213.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,N 1 1 B,G,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 451 A GLN 526 1_555 A N PTR 452 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PTR 452 A PTR 527 1_555 A N GLU 453 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C MET 266 B MET 341 1_555 B N CME 267 B CME 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C CME 267 B CME 342 1_555 B N HIS 268 B HIS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C GLN 451 B GLN 526 1_555 B N PTR 452 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C PTR 452 B PTR 527 1_555 B N GLU 453 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 150 n n C1 C2 GOL sing 151 n n C1 H11 GOL sing 152 n n C1 H12 GOL sing 153 n n O1 HO1 GOL sing 154 n n C2 O2 GOL sing 155 n n C2 C3 GOL sing 156 n n C2 H2 GOL sing 157 n n O2 HO2 GOL sing 158 n n C3 O3 GOL sing 159 n n C3 H31 GOL sing 160 n n C3 H32 GOL sing 161 n n O3 HO3 GOL sing 162 n n # _atom_sites.entry_id 7UY0 _atom_sites.fract_transf_matrix[1][1] 0.020231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 601 601 GOL GOL . D 3 GOL A 1 602 701 GOL GOL . E 4 VSE A 1 603 801 VSE VSE . F 5 CL A 1 604 4 CL CL . G 3 GOL B 1 601 601 GOL GOL . H 4 VSE B 1 602 701 VSE VSE . I 5 CL B 1 603 1 CL CL . J 5 CL B 1 604 2 CL CL . K 5 CL B 1 605 3 CL CL . L 6 PO4 B 1 606 1 PO4 PO4 . M 6 PO4 B 1 607 2 PO4 PO4 . N 7 HOH A 1 701 28 HOH HOH . N 7 HOH A 2 702 1 HOH HOH . N 7 HOH A 3 703 21 HOH HOH . N 7 HOH A 4 704 45 HOH HOH . N 7 HOH A 5 705 7 HOH HOH . N 7 HOH A 6 706 42 HOH HOH . N 7 HOH A 7 707 18 HOH HOH . N 7 HOH A 8 708 22 HOH HOH . N 7 HOH A 9 709 49 HOH HOH . N 7 HOH A 10 710 10 HOH HOH . N 7 HOH A 11 711 31 HOH HOH . N 7 HOH A 12 712 11 HOH HOH . N 7 HOH A 13 713 24 HOH HOH . N 7 HOH A 14 714 29 HOH HOH . N 7 HOH A 15 715 47 HOH HOH . N 7 HOH A 16 716 39 HOH HOH . N 7 HOH A 17 717 26 HOH HOH . N 7 HOH A 18 718 9 HOH HOH . N 7 HOH A 19 719 13 HOH HOH . N 7 HOH A 20 720 4 HOH HOH . N 7 HOH A 21 721 20 HOH HOH . N 7 HOH A 22 722 17 HOH HOH . N 7 HOH A 23 723 8 HOH HOH . N 7 HOH A 24 724 41 HOH HOH . N 7 HOH A 25 725 27 HOH HOH . N 7 HOH A 26 726 44 HOH HOH . N 7 HOH A 27 727 43 HOH HOH . N 7 HOH A 28 728 36 HOH HOH . N 7 HOH A 29 729 30 HOH HOH . N 7 HOH A 30 730 35 HOH HOH . O 7 HOH B 1 701 50 HOH HOH . O 7 HOH B 2 702 38 HOH HOH . O 7 HOH B 3 703 51 HOH HOH . O 7 HOH B 4 704 14 HOH HOH . O 7 HOH B 5 705 15 HOH HOH . O 7 HOH B 6 706 2 HOH HOH . O 7 HOH B 7 707 16 HOH HOH . O 7 HOH B 8 708 5 HOH HOH . O 7 HOH B 9 709 12 HOH HOH . O 7 HOH B 10 710 19 HOH HOH . O 7 HOH B 11 711 6 HOH HOH . O 7 HOH B 12 712 34 HOH HOH . O 7 HOH B 13 713 40 HOH HOH . O 7 HOH B 14 714 46 HOH HOH . O 7 HOH B 15 715 3 HOH HOH . O 7 HOH B 16 716 23 HOH HOH . O 7 HOH B 17 717 37 HOH HOH . O 7 HOH B 18 718 25 HOH HOH . O 7 HOH B 19 719 48 HOH HOH . O 7 HOH B 20 720 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 40.369 -4.308 -25.93 1 83.91 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . D 3 41.283 -3.373 -26.433 1 83.55 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . D 3 39.867 -5.23 -27.081 1 84.29 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . D 3 39.557 -4.504 -28.227 1 88.62 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . D 3 38.589 -5.985 -26.518 1 80.73 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . D 3 38.944 -6.842 -25.462 1 70.99 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #