data_7UY0
#
_model_server_result.job_id            DBn1XgBg4JQd3hy0L81KJw 
_model_server_result.datetime_utc      '2024-10-17 19:37:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7uy0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    7UY0 
#
_exptl.entry_id    7UY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              482.62 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UY0 
_cell.length_a            49.43 
_cell.length_b            112.09 
_cell.length_c            213.73 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,N 1 1 
B,G,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 451 A GLN 526 1_555 A N PTR 452 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C PTR 452 A PTR 527 1_555 A N GLU 453 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C MET 266 B MET 341 1_555 B N CME 267 B CME 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C CME 267 B CME 342 1_555 B N HIS 268 B HIS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 B C GLN 451 B GLN 526 1_555 B N PTR 452 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 B C PTR 452 B PTR 527 1_555 B N GLU 453 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C29 H34 N6 O' 
_chem_comp.formula_weight    482.62 
_chem_comp.id                VSE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAR CAS VSE sing 443 n n 
CAR CAQ VSE sing 444 n n 
CAS CAT VSE sing 445 n n 
CAX CAY VSE sing 446 n n 
CAX NAW VSE sing 447 n n 
CAY NAZ VSE sing 448 n n 
CAP CAO VSE doub 449 n y 
CAP CAJ VSE sing 450 n y 
C2 N1 VSE sing 451 n y 
C2 N3 VSE doub 452 n y 
CAT NAW VSE sing 453 n n 
CAT CAU VSE sing 454 n n 
CAO CAN VSE sing 455 n y 
N1 C6 VSE doub 456 n y 
N3 C4 VSE sing 457 n y 
NAW CBB VSE sing 458 n n 
C6 NAK VSE sing 459 n n 
C6 C5 VSE sing 460 n y 
C4 C5 VSE doub 461 n y 
C4 NAG VSE sing 462 n y 
C5 CAI VSE sing 463 n y 
CAQ NAG VSE sing 464 n n 
CAQ CAV VSE sing 465 n n 
NAG CAH VSE sing 466 n y 
CAH CAI VSE doub 467 n y 
CAI CAJ VSE sing 468 n n 
NAZ CBC VSE sing 469 n n 
NAZ CBA VSE sing 470 n n 
CAJ CAL VSE doub 471 n y 
CBB CBA VSE sing 472 n n 
CAN OBD VSE sing 473 n n 
CAN CAM VSE doub 474 n y 
OBD CBE VSE sing 475 n n 
CAV CAU VSE sing 476 n n 
CAL CAM VSE sing 477 n y 
CBE CBF VSE doub 478 n y 
CBE CBJ VSE sing 479 n y 
CBF CBG VSE sing 480 n y 
CBJ CBI VSE doub 481 n y 
CBG CBH VSE doub 482 n y 
CBI CBH VSE sing 483 n y 
NAK H1 VSE sing 484 n n 
NAK H2 VSE sing 485 n n 
CAL H3 VSE sing 486 n n 
CAM H4 VSE sing 487 n n 
CBF H5 VSE sing 488 n n 
CBG H6 VSE sing 489 n n 
CBH H7 VSE sing 490 n n 
CBI H8 VSE sing 491 n n 
CBJ H9 VSE sing 492 n n 
CAO H10 VSE sing 493 n n 
CAP H11 VSE sing 494 n n 
CAH H12 VSE sing 495 n n 
C2 H13 VSE sing 496 n n 
CAQ H14 VSE sing 497 n n 
CAV H15 VSE sing 498 n n 
CAV H16 VSE sing 499 n n 
CAU H17 VSE sing 500 n n 
CAU H18 VSE sing 501 n n 
CAT H19 VSE sing 502 n n 
CAS H20 VSE sing 503 n n 
CAS H21 VSE sing 504 n n 
CAR H22 VSE sing 505 n n 
CAR H23 VSE sing 506 n n 
CAX H25 VSE sing 507 n n 
CAX H26 VSE sing 508 n n 
CAY H27 VSE sing 509 n n 
CAY H28 VSE sing 510 n n 
CBC H30 VSE sing 511 n n 
CBC H31 VSE sing 512 n n 
CBC H32 VSE sing 513 n n 
CBA H33 VSE sing 514 n n 
CBA H34 VSE sing 515 n n 
CBB H35 VSE sing 516 n n 
CBB H36 VSE sing 517 n n 
#
_atom_sites.entry_id                     7UY0 
_atom_sites.fract_transf_matrix[1][1]    0.020231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 601 601 GOL GOL . 
D 3 GOL A 1 602 701 GOL GOL . 
E 4 VSE A 1 603 801 VSE VSE . 
F 5 CL A 1 604 4 CL CL . 
G 3 GOL B 1 601 601 GOL GOL . 
H 4 VSE B 1 602 701 VSE VSE . 
I 5 CL B 1 603 1 CL CL . 
J 5 CL B 1 604 2 CL CL . 
K 5 CL B 1 605 3 CL CL . 
L 6 PO4 B 1 606 1 PO4 PO4 . 
M 6 PO4 B 1 607 2 PO4 PO4 . 
N 7 HOH A 1 701 28 HOH HOH . 
N 7 HOH A 2 702 1 HOH HOH . 
N 7 HOH A 3 703 21 HOH HOH . 
N 7 HOH A 4 704 45 HOH HOH . 
N 7 HOH A 5 705 7 HOH HOH . 
N 7 HOH A 6 706 42 HOH HOH . 
N 7 HOH A 7 707 18 HOH HOH . 
N 7 HOH A 8 708 22 HOH HOH . 
N 7 HOH A 9 709 49 HOH HOH . 
N 7 HOH A 10 710 10 HOH HOH . 
N 7 HOH A 11 711 31 HOH HOH . 
N 7 HOH A 12 712 11 HOH HOH . 
N 7 HOH A 13 713 24 HOH HOH . 
N 7 HOH A 14 714 29 HOH HOH . 
N 7 HOH A 15 715 47 HOH HOH . 
N 7 HOH A 16 716 39 HOH HOH . 
N 7 HOH A 17 717 26 HOH HOH . 
N 7 HOH A 18 718 9 HOH HOH . 
N 7 HOH A 19 719 13 HOH HOH . 
N 7 HOH A 20 720 4 HOH HOH . 
N 7 HOH A 21 721 20 HOH HOH . 
N 7 HOH A 22 722 17 HOH HOH . 
N 7 HOH A 23 723 8 HOH HOH . 
N 7 HOH A 24 724 41 HOH HOH . 
N 7 HOH A 25 725 27 HOH HOH . 
N 7 HOH A 26 726 44 HOH HOH . 
N 7 HOH A 27 727 43 HOH HOH . 
N 7 HOH A 28 728 36 HOH HOH . 
N 7 HOH A 29 729 30 HOH HOH . 
N 7 HOH A 30 730 35 HOH HOH . 
O 7 HOH B 1 701 50 HOH HOH . 
O 7 HOH B 2 702 38 HOH HOH . 
O 7 HOH B 3 703 51 HOH HOH . 
O 7 HOH B 4 704 14 HOH HOH . 
O 7 HOH B 5 705 15 HOH HOH . 
O 7 HOH B 6 706 2 HOH HOH . 
O 7 HOH B 7 707 16 HOH HOH . 
O 7 HOH B 8 708 5 HOH HOH . 
O 7 HOH B 9 709 12 HOH HOH . 
O 7 HOH B 10 710 19 HOH HOH . 
O 7 HOH B 11 711 6 HOH HOH . 
O 7 HOH B 12 712 34 HOH HOH . 
O 7 HOH B 13 713 40 HOH HOH . 
O 7 HOH B 14 714 46 HOH HOH . 
O 7 HOH B 15 715 3 HOH HOH . 
O 7 HOH B 16 716 23 HOH HOH . 
O 7 HOH B 17 717 37 HOH HOH . 
O 7 HOH B 18 718 25 HOH HOH . 
O 7 HOH B 19 719 48 HOH HOH . 
O 7 HOH B 20 720 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NAK VSE . . . E 4 35.004 -1.576 -16.701 1 49.09 ? NAK VSE 603 A 1 
HETATM 2 C C6 VSE . . . E 4 34.761 -1.966 -15.344 1 47.44 ? C6 VSE 603 A 1 
HETATM 3 C C5 VSE . . . E 4 35.531 -1.497 -14.268 1 45.18 ? C5 VSE 603 A 1 
HETATM 4 C CAI VSE . . . E 4 36.658 -0.636 -14.084 1 44.6 ? CAI VSE 603 A 1 
HETATM 5 C CAJ VSE . . . E 4 37.384 0.135 -15.051 1 43.51 ? CAJ VSE 603 A 1 
HETATM 6 C CAL VSE . . . E 4 36.654 0.917 -15.964 1 41.69 ? CAL VSE 603 A 1 
HETATM 7 C CAM VSE . . . E 4 37.333 1.713 -16.907 1 44.79 ? CAM VSE 603 A 1 
HETATM 8 C CAN VSE . . . E 4 38.738 1.738 -16.934 1 44.31 ? CAN VSE 603 A 1 
HETATM 9 O OBD VSE . . . E 4 39.363 2.609 -17.91 1 45.58 ? OBD VSE 603 A 1 
HETATM 10 C CBE VSE . . . E 4 40.474 2.165 -18.652 1 44.61 ? CBE VSE 603 A 1 
HETATM 11 C CBF VSE . . . E 4 40.489 0.913 -19.274 1 42.37 ? CBF VSE 603 A 1 
HETATM 12 C CBG VSE . . . E 4 41.597 0.54 -20.022 1 43.19 ? CBG VSE 603 A 1 
HETATM 13 C CBH VSE . . . E 4 42.679 1.416 -20.158 1 43.8 ? CBH VSE 603 A 1 
HETATM 14 C CBI VSE . . . E 4 42.652 2.676 -19.543 1 40.44 ? CBI VSE 603 A 1 
HETATM 15 C CBJ VSE . . . E 4 41.553 3.052 -18.802 1 41.44 ? CBJ VSE 603 A 1 
HETATM 16 C CAO VSE . . . E 4 39.477 0.986 -16.004 1 41.51 ? CAO VSE 603 A 1 
HETATM 17 C CAP VSE . . . E 4 38.789 0.185 -15.058 1 42.76 ? CAP VSE 603 A 1 
HETATM 18 C CAH VSE . . . E 4 36.913 -0.608 -12.705 1 46.39 ? CAH VSE 603 A 1 
HETATM 19 N NAG VSE . . . E 4 36.02 -1.391 -12.089 1 45 ? NAG VSE 603 A 1 
HETATM 20 C C4 VSE . . . E 4 35.185 -1.949 -12.995 1 44.28 ? C4 VSE 603 A 1 
HETATM 21 N N3 VSE . . . E 4 34.144 -2.81 -12.836 1 41.64 ? N3 VSE 603 A 1 
HETATM 22 C C2 VSE . . . E 4 33.461 -3.216 -13.871 1 42.16 ? C2 VSE 603 A 1 
HETATM 23 N N1 VSE . . . E 4 33.75 -2.807 -15.115 1 45.63 ? N1 VSE 603 A 1 
HETATM 24 C CAQ VSE . . . E 4 35.966 -1.687 -10.614 1 42.23 ? CAQ VSE 603 A 1 
HETATM 25 C CAV VSE . . . E 4 37.064 -2.596 -10.06 1 41.01 ? CAV VSE 603 A 1 
HETATM 26 C CAU VSE . . . E 4 37.099 -2.624 -8.531 1 42.97 ? CAU VSE 603 A 1 
HETATM 27 C CAT VSE . . . E 4 37.238 -1.198 -7.967 1 48.02 ? CAT VSE 603 A 1 
HETATM 28 C CAS VSE . . . E 4 36.129 -0.264 -8.508 1 44.01 ? CAS VSE 603 A 1 
HETATM 29 C CAR VSE . . . E 4 36.067 -0.25 -10.059 1 43.61 ? CAR VSE 603 A 1 
HETATM 30 N NAW VSE . . . E 4 37.157 -1.012 -6.667 1 53.94 ? NAW VSE 603 A 1 
HETATM 31 C CAX VSE . . . E 4 38.282 -1.61 -6.1 1 53.99 ? CAX VSE 603 A 1 
HETATM 32 C CAY VSE . . . E 4 38.264 -1.652 -4.565 1 57.61 ? CAY VSE 603 A 1 
HETATM 33 N NAZ VSE . . . E 4 37.102 -2.192 -4.095 1 61.28 ? NAZ VSE 603 A 1 
HETATM 34 C CBC VSE . . . E 4 37.064 -2.169 -2.808 1 57.47 ? CBC VSE 603 A 1 
HETATM 35 C CBA VSE . . . E 4 35.987 -1.574 -4.62 1 57.02 ? CBA VSE 603 A 1 
HETATM 36 C CBB VSE . . . E 4 36.01 -1.531 -6.161 1 54.61 ? CBB VSE 603 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#