data_7UY1 # _model_server_result.job_id yB7iEOmh7bWX-xlQbTYWbg _model_server_result.datetime_utc '2024-11-29 16:54:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7UY1 # _exptl.entry_id 7UY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 159.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methyl-1,5-naphthyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UY1 _cell.length_a 101.187 _cell.length_b 138.21 _cell.length_c 178.564 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H9 N3' _chem_comp.formula_weight 159.188 _chem_comp.id PJ0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-1,5-naphthyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 PJ0 sing 322 n y C6 N5 PJ0 doub 323 n y C7 C8 PJ0 doub 324 n y N5 C4 PJ0 sing 325 n y C8 C9 PJ0 sing 326 n y C4 C9 PJ0 doub 327 n y C4 C3 PJ0 sing 328 n y C9 N10 PJ0 sing 329 n y C3 C2 PJ0 doub 330 n y N10 C11 PJ0 doub 331 n y C2 C11 PJ0 sing 332 n y C2 C1 PJ0 sing 333 n n C11 N12 PJ0 sing 334 n n C1 H1 PJ0 sing 335 n n C1 H2 PJ0 sing 336 n n C1 H3 PJ0 sing 337 n n C3 H4 PJ0 sing 338 n n C6 H5 PJ0 sing 339 n n C7 H6 PJ0 sing 340 n n C8 H7 PJ0 sing 341 n n N12 H8 PJ0 sing 342 n n N12 H9 PJ0 sing 343 n n # _atom_sites.entry_id 7UY1 _atom_sites.fract_transf_matrix[1][1] 0.009883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PJ0 A 1 701 1 PJ0 INX . D 4 MTA A 1 702 1 MTA MTA . E 5 SO4 A 1 703 2 SO4 SO4 . F 6 EDO A 1 704 3 EDO EDO . G 7 PEG A 1 705 4 PEG PEG . H 7 PEG A 1 706 5 PEG PEG . I 8 CL A 1 707 6 CL CL . J 7 PEG A 1 708 7 PEG PEG . K 8 CL A 1 709 8 CL CL . L 6 EDO A 1 710 9 EDO EDO . M 9 HOH A 1 801 13 HOH HOH . M 9 HOH A 2 802 21 HOH HOH . M 9 HOH A 3 803 25 HOH HOH . M 9 HOH A 4 804 17 HOH HOH . M 9 HOH A 5 805 18 HOH HOH . M 9 HOH A 6 806 58 HOH HOH . M 9 HOH A 7 807 54 HOH HOH . M 9 HOH A 8 808 42 HOH HOH . M 9 HOH A 9 809 37 HOH HOH . M 9 HOH A 10 810 14 HOH HOH . M 9 HOH A 11 811 20 HOH HOH . M 9 HOH A 12 812 28 HOH HOH . M 9 HOH A 13 813 24 HOH HOH . M 9 HOH A 14 814 35 HOH HOH . M 9 HOH A 15 815 49 HOH HOH . M 9 HOH A 16 816 51 HOH HOH . M 9 HOH A 17 817 22 HOH HOH . M 9 HOH A 18 818 44 HOH HOH . M 9 HOH A 19 819 29 HOH HOH . M 9 HOH A 20 820 3 HOH HOH . M 9 HOH A 21 821 50 HOH HOH . M 9 HOH A 22 822 60 HOH HOH . M 9 HOH A 23 823 36 HOH HOH . M 9 HOH A 24 824 5 HOH HOH . M 9 HOH A 25 825 57 HOH HOH . M 9 HOH A 26 826 30 HOH HOH . M 9 HOH A 27 827 64 HOH HOH . M 9 HOH A 28 828 4 HOH HOH . M 9 HOH A 29 829 46 HOH HOH . M 9 HOH A 30 830 67 HOH HOH . M 9 HOH A 31 831 63 HOH HOH . M 9 HOH A 32 832 45 HOH HOH . M 9 HOH A 33 833 19 HOH HOH . M 9 HOH A 34 834 65 HOH HOH . M 9 HOH A 35 835 8 HOH HOH . M 9 HOH A 36 836 9 HOH HOH . M 9 HOH A 37 837 27 HOH HOH . M 9 HOH A 38 838 48 HOH HOH . M 9 HOH A 39 839 23 HOH HOH . M 9 HOH A 40 840 47 HOH HOH . N 9 HOH B 1 401 1 HOH HOH . N 9 HOH B 2 402 2 HOH HOH . N 9 HOH B 3 403 66 HOH HOH . N 9 HOH B 4 404 53 HOH HOH . N 9 HOH B 5 405 31 HOH HOH . N 9 HOH B 6 406 10 HOH HOH . N 9 HOH B 7 407 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PJ0 . . . C 3 -29.161 -40.327 -9.279 1 68.38 ? C1 PJ0 701 A 1 HETATM 2 C C2 PJ0 . . . C 3 -29.629 -41.676 -9.735 1 64.82 ? C2 PJ0 701 A 1 HETATM 3 C C3 PJ0 . . . C 3 -28.727 -42.578 -10.188 1 60.71 ? C3 PJ0 701 A 1 HETATM 4 C C4 PJ0 . . . C 3 -29.204 -43.829 -10.608 1 62.22 ? C4 PJ0 701 A 1 HETATM 5 C C6 PJ0 . . . C 3 -28.794 -45.921 -11.457 1 63.6 ? C6 PJ0 701 A 1 HETATM 6 C C7 PJ0 . . . C 3 -30.14 -46.248 -11.418 1 64.34 ? C7 PJ0 701 A 1 HETATM 7 C C8 PJ0 . . . C 3 -31.049 -45.345 -10.961 1 63.33 ? C8 PJ0 701 A 1 HETATM 8 N N10 PJ0 . . . C 3 -31.424 -43.172 -10.084 1 63.69 ? N10 PJ0 701 A 1 HETATM 9 C C11 PJ0 . . . C 3 -30.987 -42.001 -9.692 1 68.85 ? C11 PJ0 701 A 1 HETATM 10 N N5 PJ0 . . . C 3 -28.368 -44.753 -11.062 1 66.63 ? N5 PJ0 701 A 1 HETATM 11 C C9 PJ0 . . . C 3 -30.584 -44.093 -10.541 1 61.51 ? C9 PJ0 701 A 1 HETATM 12 N N12 PJ0 . . . C 3 -31.893 -41.067 -9.223 1 69.06 ? N12 PJ0 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #