data_7UY1
#
_model_server_result.job_id            NKhUt0z2FR9nPwigPrZFqg 
_model_server_result.datetime_utc      '2024-10-18 12:26:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7uy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    7UY1 
#
_exptl.entry_id    7UY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UY1 
_cell.length_a            101.187 
_cell.length_b            138.21 
_cell.length_c            178.564 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 246 n n 
CS HCS1 MTA sing 247 n n 
CS HCS2 MTA sing 248 n n 
CS HCS3 MTA sing 249 n n 
S5' C5' MTA sing 250 n n 
C5' C4' MTA sing 251 n n 
C5' "H5'1" MTA sing 252 n n 
C5' "H5'2" MTA sing 253 n n 
C4' O4' MTA sing 254 n n 
C4' C3' MTA sing 255 n n 
C4' H4' MTA sing 256 n n 
O4' C1' MTA sing 257 n n 
C2' O2' MTA sing 258 n n 
C2' C3' MTA sing 259 n n 
C2' C1' MTA sing 260 n n 
C2' H2' MTA sing 261 n n 
O2' HO2' MTA sing 262 n n 
C3' O3' MTA sing 263 n n 
C3' H3' MTA sing 264 n n 
O3' H3T MTA sing 265 n n 
C1' N9 MTA sing 266 n n 
C1' H1' MTA sing 267 n n 
N9 C8 MTA sing 268 n y 
N9 C4 MTA sing 269 n y 
C8 N7 MTA doub 270 n y 
C8 H8 MTA sing 271 n n 
N7 C5 MTA sing 272 n y 
C5 C6 MTA sing 273 n y 
C5 C4 MTA doub 274 n y 
C6 N6 MTA sing 275 n n 
C6 N1 MTA doub 276 n y 
N6 H61 MTA sing 277 n n 
N6 H62 MTA sing 278 n n 
N1 C2 MTA sing 279 n y 
C2 N3 MTA doub 280 n y 
C2 H2 MTA sing 281 n n 
N3 C4 MTA sing 282 n y 
#
_atom_sites.entry_id                     7UY1 
_atom_sites.fract_transf_matrix[1][1]    0.009883 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PJ0 A 1 701 1 PJ0 INX . 
D 4 MTA A 1 702 1 MTA MTA . 
E 5 SO4 A 1 703 2 SO4 SO4 . 
F 6 EDO A 1 704 3 EDO EDO . 
G 7 PEG A 1 705 4 PEG PEG . 
H 7 PEG A 1 706 5 PEG PEG . 
I 8 CL A 1 707 6 CL CL . 
J 7 PEG A 1 708 7 PEG PEG . 
K 8 CL A 1 709 8 CL CL . 
L 6 EDO A 1 710 9 EDO EDO . 
M 9 HOH A 1 801 13 HOH HOH . 
M 9 HOH A 2 802 21 HOH HOH . 
M 9 HOH A 3 803 25 HOH HOH . 
M 9 HOH A 4 804 17 HOH HOH . 
M 9 HOH A 5 805 18 HOH HOH . 
M 9 HOH A 6 806 58 HOH HOH . 
M 9 HOH A 7 807 54 HOH HOH . 
M 9 HOH A 8 808 42 HOH HOH . 
M 9 HOH A 9 809 37 HOH HOH . 
M 9 HOH A 10 810 14 HOH HOH . 
M 9 HOH A 11 811 20 HOH HOH . 
M 9 HOH A 12 812 28 HOH HOH . 
M 9 HOH A 13 813 24 HOH HOH . 
M 9 HOH A 14 814 35 HOH HOH . 
M 9 HOH A 15 815 49 HOH HOH . 
M 9 HOH A 16 816 51 HOH HOH . 
M 9 HOH A 17 817 22 HOH HOH . 
M 9 HOH A 18 818 44 HOH HOH . 
M 9 HOH A 19 819 29 HOH HOH . 
M 9 HOH A 20 820 3 HOH HOH . 
M 9 HOH A 21 821 50 HOH HOH . 
M 9 HOH A 22 822 60 HOH HOH . 
M 9 HOH A 23 823 36 HOH HOH . 
M 9 HOH A 24 824 5 HOH HOH . 
M 9 HOH A 25 825 57 HOH HOH . 
M 9 HOH A 26 826 30 HOH HOH . 
M 9 HOH A 27 827 64 HOH HOH . 
M 9 HOH A 28 828 4 HOH HOH . 
M 9 HOH A 29 829 46 HOH HOH . 
M 9 HOH A 30 830 67 HOH HOH . 
M 9 HOH A 31 831 63 HOH HOH . 
M 9 HOH A 32 832 45 HOH HOH . 
M 9 HOH A 33 833 19 HOH HOH . 
M 9 HOH A 34 834 65 HOH HOH . 
M 9 HOH A 35 835 8 HOH HOH . 
M 9 HOH A 36 836 9 HOH HOH . 
M 9 HOH A 37 837 27 HOH HOH . 
M 9 HOH A 38 838 48 HOH HOH . 
M 9 HOH A 39 839 23 HOH HOH . 
M 9 HOH A 40 840 47 HOH HOH . 
N 9 HOH B 1 401 1 HOH HOH . 
N 9 HOH B 2 402 2 HOH HOH . 
N 9 HOH B 3 403 66 HOH HOH . 
N 9 HOH B 4 404 53 HOH HOH . 
N 9 HOH B 5 405 31 HOH HOH . 
N 9 HOH B 6 406 10 HOH HOH . 
N 9 HOH B 7 407 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . D 4 -28.831 -38.263 -6.06 1 66.51 ? CS MTA 702 A 1 
HETATM 2 S S5' MTA . . . D 4 -29.986 -39.587 -5.936 1 66.59 ? S5' MTA 702 A 1 
HETATM 3 C C5' MTA . . . D 4 -31.542 -38.774 -6.141 1 58.98 ? C5' MTA 702 A 1 
HETATM 4 C C4' MTA . . . D 4 -31.874 -37.919 -4.918 1 60.71 ? C4' MTA 702 A 1 
HETATM 5 O O4' MTA . . . D 4 -33.117 -37.226 -5.078 1 61.64 ? O4' MTA 702 A 1 
HETATM 6 C C2' MTA . . . D 4 -33.426 -38.46 -3.134 1 56.1 ? C2' MTA 702 A 1 
HETATM 7 O O2' MTA . . . D 4 -33.522 -38.377 -1.708 1 62.68 ? O2' MTA 702 A 1 
HETATM 8 C C3' MTA . . . D 4 -32.012 -38.717 -3.623 1 56.89 ? C3' MTA 702 A 1 
HETATM 9 O O3' MTA . . . D 4 -31.028 -38.237 -2.704 1 53.58 ? O3' MTA 702 A 1 
HETATM 10 C C1' MTA . . . D 4 -33.746 -37.137 -3.799 1 53.06 ? C1' MTA 702 A 1 
HETATM 11 N N9 MTA . . . D 4 -35.193 -36.865 -3.946 1 49.09 ? N9 MTA 702 A 1 
HETATM 12 C C8 MTA . . . D 4 -36.101 -37.654 -4.547 1 56 ? C8 MTA 702 A 1 
HETATM 13 N N7 MTA . . . D 4 -37.333 -37.085 -4.502 1 55.57 ? N7 MTA 702 A 1 
HETATM 14 C C5 MTA . . . D 4 -37.22 -35.908 -3.867 1 50.34 ? C5 MTA 702 A 1 
HETATM 15 C C6 MTA . . . D 4 -38.128 -34.8 -3.475 1 56.12 ? C6 MTA 702 A 1 
HETATM 16 N N6 MTA . . . D 4 -39.449 -34.829 -3.767 1 64.27 ? N6 MTA 702 A 1 
HETATM 17 N N1 MTA . . . D 4 -37.586 -33.744 -2.82 1 60.17 ? N1 MTA 702 A 1 
HETATM 18 C C2 MTA . . . D 4 -36.269 -33.676 -2.518 1 60.75 ? C2 MTA 702 A 1 
HETATM 19 N N3 MTA . . . D 4 -35.398 -34.654 -2.842 1 58.11 ? N3 MTA 702 A 1 
HETATM 20 C C4 MTA . . . D 4 -35.801 -35.768 -3.506 1 51.64 ? C4 MTA 702 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#