data_7UY2 # _model_server_result.job_id iLmMAN8KSdH-YQasF72MKg _model_server_result.datetime_utc '2024-11-07 13:16:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 7UY2 # _exptl.entry_id 7UY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UY2 _cell.length_a 49.42 _cell.length_b 49.42 _cell.length_c 267.12 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I 1 1 B,D,G,H,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 59 1_555 B SG CYS 64 B CYS 59 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C SG CYS 4 C CYS 7 1_555 F CK WHL . C WHL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? covale ? covale2 C SG CYS 11 C CYS 14 1_555 F CH WHL . C WHL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? covale ? covale3 C C TYR 14 C TYR 17 1_555 E N NH2 . C NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 D SG CYS 4 D CYS 7 1_555 H CK WHL . D WHL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? covale ? covale5 D SG CYS 11 D CYS 14 1_555 H CH WHL . D WHL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? covale ? covale6 D C TYR 14 D TYR 17 1_555 G N NH2 . D NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 378 n n CJ NB WHL sing 379 n n CJ OA WHL doub 380 n n NB CC WHL sing 381 n n CC CB WHL doub 382 n y CC CD WHL sing 383 n y CB CA WHL sing 384 n y CD CE WHL doub 385 n y CA CF WHL doub 386 n y CE CF WHL sing 387 n y CF NA WHL sing 388 n n OB CG WHL doub 389 n n NA CG WHL sing 390 n n CG CH WHL sing 391 n n CA H1 WHL sing 392 n n CB H2 WHL sing 393 n n NB H3 WHL sing 394 n n CD H4 WHL sing 395 n n CE H5 WHL sing 396 n n CH H6 WHL sing 397 n n CH H7 WHL sing 398 n n CH H8 WHL sing 399 n n CK H9 WHL sing 400 n n CK H10 WHL sing 401 n n CK H11 WHL sing 402 n n NA H12 WHL sing 403 n n # _atom_sites.entry_id 7UY2 _atom_sites.fract_transf_matrix[1][1] 0.020235 _atom_sites.fract_transf_matrix[1][2] 0.011683 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NH2 C 1 101 18 NH2 NH2 . F 4 WHL C 1 102 101 WHL WHL . G 3 NH2 D 1 101 18 NH2 NH2 . H 4 WHL D 1 102 101 WHL WHL . I 5 HOH A 1 201 3 HOH HOH . I 5 HOH A 2 202 1 HOH HOH . I 5 HOH A 3 203 2 HOH HOH . I 5 HOH A 4 204 4 HOH HOH . I 5 HOH A 5 205 6 HOH HOH . I 5 HOH A 6 206 10 HOH HOH . I 5 HOH A 7 207 7 HOH HOH . I 5 HOH A 8 208 5 HOH HOH . I 5 HOH A 9 209 9 HOH HOH . I 5 HOH A 10 210 16 HOH HOH . I 5 HOH A 11 211 15 HOH HOH . J 5 HOH B 1 201 8 HOH HOH . J 5 HOH B 2 202 12 HOH HOH . J 5 HOH B 3 203 13 HOH HOH . K 5 HOH D 1 201 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . F 4 -0.679 16.732 -4.661 1 64.7 ? CA WHL 102 C 1 HETATM 2 C CB WHL . . . F 4 -1.158 17.599 -3.685 1 68.81 ? CB WHL 102 C 1 HETATM 3 N NB WHL . . . F 4 -2.923 18.628 -2.509 1 79.62 ? NB WHL 102 C 1 HETATM 4 O OB WHL . . . F 4 1.114 15.045 -6.077 1 73.91 ? OB WHL 102 C 1 HETATM 5 C CG WHL . . . F 4 0.127 14.704 -6.711 1 70 ? CG WHL 102 C 1 HETATM 6 C CD WHL . . . F 4 -3.404 17.025 -4.28 1 71.22 ? CD WHL 102 C 1 HETATM 7 C CE WHL . . . F 4 -2.924 16.157 -5.256 1 66.32 ? CE WHL 102 C 1 HETATM 8 C CH WHL . . . F 4 0.253 13.761 -7.874 1 67.37 ? CH WHL 102 C 1 HETATM 9 C CC WHL . . . F 4 -2.524 17.757 -3.484 1 74.87 ? CC WHL 102 C 1 HETATM 10 C CF WHL . . . F 4 -1.557 15.995 -5.452 1 63.83 ? CF WHL 102 C 1 HETATM 11 C CJ WHL . . . F 4 -4.173 18.934 -2.135 1 89.17 ? CJ WHL 102 C 1 HETATM 12 C CK WHL . . . F 4 -4.266 19.945 -1.025 1 88.45 ? CK WHL 102 C 1 HETATM 13 N NA WHL . . . F 4 -1.126 15.109 -6.461 1 64.04 ? NA WHL 102 C 1 HETATM 14 O OA WHL . . . F 4 -5.188 18.475 -2.634 1 90.95 ? OA WHL 102 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #