data_7UYF # _model_server_result.job_id evAJdvXAygHzmnvwkybXnA _model_server_result.datetime_utc '2024-11-26 03:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7UYF # _exptl.entry_id 7UYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 159.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methyl-1,5-naphthyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UYF _cell.length_a 100.475 _cell.length_b 137.782 _cell.length_c 178.066 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H9 N3' _chem_comp.formula_weight 159.188 _chem_comp.id PUI _chem_comp.mon_nstd_flag . _chem_comp.name 4-methyl-1,5-naphthyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 PUI sing 330 n y C10 N11 PUI doub 331 n y C9 C8 PUI doub 332 n y N11 C12 PUI sing 333 n y C8 C7 PUI sing 334 n y C12 C7 PUI doub 335 n y C12 C2 PUI sing 336 n y C1 C2 PUI sing 337 n n C7 N6 PUI sing 338 n y C2 C3 PUI doub 339 n y N6 C4 PUI doub 340 n y C3 C4 PUI sing 341 n y C4 N5 PUI sing 342 n n C1 H1 PUI sing 343 n n C1 H2 PUI sing 344 n n C1 H3 PUI sing 345 n n C3 H4 PUI sing 346 n n C8 H5 PUI sing 347 n n N5 H6 PUI sing 348 n n N5 H7 PUI sing 349 n n C9 H8 PUI sing 350 n n C10 H9 PUI sing 351 n n # _atom_sites.entry_id 7UYF _atom_sites.fract_transf_matrix[1][1] 0.009953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PUI A 1 701 1 PUI INX . D 4 MTA A 1 702 1 MTA MTA . E 5 PEG A 1 703 2 PEG PEG . F 5 PEG A 1 704 3 PEG PEG . G 5 PEG A 1 705 4 PEG PEG . H 6 CL A 1 706 1 CL CL . I 6 CL A 1 707 2 CL CL . J 6 CL A 1 708 3 CL CL . K 7 HOH A 1 801 6 HOH HOH . K 7 HOH A 2 802 22 HOH HOH . K 7 HOH A 3 803 68 HOH HOH . K 7 HOH A 4 804 55 HOH HOH . K 7 HOH A 5 805 79 HOH HOH . K 7 HOH A 6 806 61 HOH HOH . K 7 HOH A 7 807 69 HOH HOH . K 7 HOH A 8 808 44 HOH HOH . K 7 HOH A 9 809 71 HOH HOH . K 7 HOH A 10 810 70 HOH HOH . K 7 HOH A 11 811 9 HOH HOH . K 7 HOH A 12 812 33 HOH HOH . K 7 HOH A 13 813 30 HOH HOH . K 7 HOH A 14 814 43 HOH HOH . K 7 HOH A 15 815 19 HOH HOH . K 7 HOH A 16 816 45 HOH HOH . K 7 HOH A 17 817 36 HOH HOH . K 7 HOH A 18 818 21 HOH HOH . K 7 HOH A 19 819 15 HOH HOH . K 7 HOH A 20 820 28 HOH HOH . K 7 HOH A 21 821 12 HOH HOH . K 7 HOH A 22 822 2 HOH HOH . K 7 HOH A 23 823 18 HOH HOH . K 7 HOH A 24 824 23 HOH HOH . K 7 HOH A 25 825 13 HOH HOH . K 7 HOH A 26 826 64 HOH HOH . K 7 HOH A 27 827 49 HOH HOH . K 7 HOH A 28 828 50 HOH HOH . K 7 HOH A 29 829 5 HOH HOH . K 7 HOH A 30 830 57 HOH HOH . K 7 HOH A 31 831 72 HOH HOH . K 7 HOH A 32 832 47 HOH HOH . K 7 HOH A 33 833 16 HOH HOH . K 7 HOH A 34 834 56 HOH HOH . K 7 HOH A 35 835 14 HOH HOH . K 7 HOH A 36 836 51 HOH HOH . K 7 HOH A 37 837 75 HOH HOH . K 7 HOH A 38 838 27 HOH HOH . K 7 HOH A 39 839 17 HOH HOH . K 7 HOH A 40 840 10 HOH HOH . K 7 HOH A 41 841 26 HOH HOH . K 7 HOH A 42 842 34 HOH HOH . K 7 HOH A 43 843 20 HOH HOH . K 7 HOH A 44 844 53 HOH HOH . K 7 HOH A 45 845 35 HOH HOH . K 7 HOH A 46 846 8 HOH HOH . K 7 HOH A 47 847 52 HOH HOH . K 7 HOH A 48 848 3 HOH HOH . K 7 HOH A 49 849 78 HOH HOH . K 7 HOH A 50 850 60 HOH HOH . K 7 HOH A 51 851 76 HOH HOH . K 7 HOH A 52 852 42 HOH HOH . K 7 HOH A 53 853 63 HOH HOH . K 7 HOH A 54 854 48 HOH HOH . K 7 HOH A 55 855 7 HOH HOH . K 7 HOH A 56 856 40 HOH HOH . K 7 HOH A 57 857 58 HOH HOH . K 7 HOH A 58 858 65 HOH HOH . K 7 HOH A 59 859 62 HOH HOH . K 7 HOH A 60 860 66 HOH HOH . L 7 HOH B 1 401 24 HOH HOH . L 7 HOH B 2 402 41 HOH HOH . L 7 HOH B 3 403 46 HOH HOH . L 7 HOH B 4 404 1 HOH HOH . L 7 HOH B 5 405 37 HOH HOH . L 7 HOH B 6 406 38 HOH HOH . L 7 HOH B 7 407 32 HOH HOH . L 7 HOH B 8 408 59 HOH HOH . L 7 HOH B 9 409 4 HOH HOH . L 7 HOH B 10 410 31 HOH HOH . L 7 HOH B 11 411 54 HOH HOH . L 7 HOH B 12 412 39 HOH HOH . L 7 HOH B 13 413 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PUI . . . C 3 -26.957 -41.95 -10.354 1 51.77 ? C1 PUI 701 A 1 HETATM 2 C C2 PUI . . . C 3 -28.403 -42.345 -10.206 1 50.84 ? C2 PUI 701 A 1 HETATM 3 C C3 PUI . . . C 3 -29.315 -41.391 -9.849 1 48.87 ? C3 PUI 701 A 1 HETATM 4 C C4 PUI . . . C 3 -30.672 -41.729 -9.706 1 50.05 ? C4 PUI 701 A 1 HETATM 5 C C7 PUI . . . C 3 -30.248 -43.955 -10.271 1 50.17 ? C7 PUI 701 A 1 HETATM 6 C C8 PUI . . . C 3 -30.707 -45.279 -10.494 1 53.75 ? C8 PUI 701 A 1 HETATM 7 C C12 PUI . . . C 3 -28.855 -43.675 -10.432 1 51.77 ? C12 PUI 701 A 1 HETATM 8 N N5 PUI . . . C 3 -31.569 -40.737 -9.342 1 50.6 ? N5 PUI 701 A 1 HETATM 9 N N6 PUI . . . C 3 -31.088 -42.969 -9.918 1 48.64 ? N6 PUI 701 A 1 HETATM 10 C C9 PUI . . . C 3 -29.794 -46.24 -10.852 1 56.65 ? C9 PUI 701 A 1 HETATM 11 C C10 PUI . . . C 3 -28.445 -45.897 -10.99 1 57 ? C10 PUI 701 A 1 HETATM 12 N N11 PUI . . . C 3 -28.019 -44.666 -10.786 1 54.69 ? N11 PUI 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #