data_7UZP # _model_server_result.job_id gh432B5BDwWFOo4rEK7vcw _model_server_result.datetime_utc '2024-11-26 11:00:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7UZP # _exptl.entry_id 7UZP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.57 _cell.angle_gamma 90 _cell.entry_id 7UZP _cell.length_a 101.65 _cell.length_b 58.949 _cell.length_c 77.924 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 48 1_555 A SG CYS 46 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 37 A CYS 64 1_555 A SG CYS 77 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 60 A CYS 87 1_555 A SG CYS 99 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 21 C CYS 48 1_555 C SG CYS 46 C CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 37 C CYS 64 1_555 C SG CYS 77 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 60 C CYS 87 1_555 C SG CYS 99 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 E SG CYS 21 E CYS 48 1_555 E SG CYS 46 E CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 E SG CYS 37 E CYS 64 1_555 E SG CYS 77 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 60 E CYS 87 1_555 E SG CYS 99 E CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B C PHE 9 B PHE 23 1_555 B N XCP 10 B XCP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C XCP 10 B XCP 24 1_555 B N HIS 11 B HIS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C LEU 13 B LEU 27 1_555 B N XCP 14 B XCP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C XCP 14 B XCP 28 1_555 B N ALA 15 B ALA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C GLU 16 B GLU 30 1_555 B N XCP 17 B XCP 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C XCP 17 B XCP 31 1_555 B N HIS 18 B HIS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C PHE 9 D PHE 23 1_555 D N XCP 10 D XCP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C XCP 10 D XCP 24 1_555 D N HIS 11 D HIS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 D C LEU 13 D LEU 27 1_555 D N XCP 14 D XCP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 D C XCP 14 D XCP 28 1_555 D N ALA 15 D ALA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 D C GLU 16 D GLU 30 1_555 D N XCP 17 D XCP 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 D C XCP 17 D XCP 31 1_555 D N HIS 18 D HIS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 F C PHE 9 F PHE 23 1_555 F N XCP 10 F XCP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 F C XCP 10 F XCP 24 1_555 F N HIS 11 F HIS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 F C LEU 13 F LEU 27 1_555 F N XCP 14 F XCP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 F C XCP 14 F XCP 28 1_555 F N ALA 15 F ALA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 F C GLU 16 F GLU 30 1_555 F N XCP 17 F XCP 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 F C XCP 17 F XCP 31 1_555 F N HIS 18 F HIS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 B NE2 HIS 12 B HIS 26 1_555 H ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 H ZN ZN . B ZN 101 1_555 K O HOH . B HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 H ZN ZN . B ZN 101 1_555 D NE2 HIS 12 D HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 H ZN ZN . B ZN 101 1_555 F NE2 HIS 12 F HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7UZP _atom_sites.fract_transf_matrix[1][1] 0.009838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005136 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 EDO A 1 201 2 EDO EDO . H 4 ZN B 1 101 1 ZN ZN . I 3 EDO F 1 101 1 EDO EDO . J 5 HOH A 1 301 120 HOH HOH . J 5 HOH A 2 302 196 HOH HOH . J 5 HOH A 3 303 215 HOH HOH . J 5 HOH A 4 304 81 HOH HOH . J 5 HOH A 5 305 21 HOH HOH . J 5 HOH A 6 306 57 HOH HOH . J 5 HOH A 7 307 210 HOH HOH . J 5 HOH A 8 308 175 HOH HOH . J 5 HOH A 9 309 8 HOH HOH . J 5 HOH A 10 310 23 HOH HOH . J 5 HOH A 11 311 167 HOH HOH . J 5 HOH A 12 312 47 HOH HOH . J 5 HOH A 13 313 59 HOH HOH . J 5 HOH A 14 314 40 HOH HOH . J 5 HOH A 15 315 132 HOH HOH . J 5 HOH A 16 316 45 HOH HOH . J 5 HOH A 17 317 4 HOH HOH . J 5 HOH A 18 318 130 HOH HOH . J 5 HOH A 19 319 26 HOH HOH . J 5 HOH A 20 320 13 HOH HOH . J 5 HOH A 21 321 92 HOH HOH . J 5 HOH A 22 322 66 HOH HOH . J 5 HOH A 23 323 83 HOH HOH . J 5 HOH A 24 324 173 HOH HOH . J 5 HOH A 25 325 67 HOH HOH . J 5 HOH A 26 326 179 HOH HOH . J 5 HOH A 27 327 122 HOH HOH . J 5 HOH A 28 328 94 HOH HOH . J 5 HOH A 29 329 181 HOH HOH . J 5 HOH A 30 330 7 HOH HOH . J 5 HOH A 31 331 1 HOH HOH . J 5 HOH A 32 332 183 HOH HOH . J 5 HOH A 33 333 46 HOH HOH . J 5 HOH A 34 334 70 HOH HOH . J 5 HOH A 35 335 78 HOH HOH . J 5 HOH A 36 336 28 HOH HOH . J 5 HOH A 37 337 176 HOH HOH . J 5 HOH A 38 338 55 HOH HOH . J 5 HOH A 39 339 213 HOH HOH . J 5 HOH A 40 340 22 HOH HOH . J 5 HOH A 41 341 180 HOH HOH . J 5 HOH A 42 342 174 HOH HOH . K 5 HOH B 1 201 89 HOH HOH . K 5 HOH B 2 202 37 HOH HOH . K 5 HOH B 3 203 126 HOH HOH . K 5 HOH B 4 204 123 HOH HOH . K 5 HOH B 5 205 163 HOH HOH . K 5 HOH B 6 206 121 HOH HOH . K 5 HOH B 7 207 200 HOH HOH . L 5 HOH C 1 201 91 HOH HOH . L 5 HOH C 2 202 214 HOH HOH . L 5 HOH C 3 203 103 HOH HOH . L 5 HOH C 4 204 216 HOH HOH . L 5 HOH C 5 205 195 HOH HOH . L 5 HOH C 6 206 219 HOH HOH . L 5 HOH C 7 207 25 HOH HOH . L 5 HOH C 8 208 14 HOH HOH . L 5 HOH C 9 209 18 HOH HOH . L 5 HOH C 10 210 24 HOH HOH . L 5 HOH C 11 211 41 HOH HOH . L 5 HOH C 12 212 9 HOH HOH . L 5 HOH C 13 213 187 HOH HOH . L 5 HOH C 14 214 62 HOH HOH . L 5 HOH C 15 215 201 HOH HOH . L 5 HOH C 16 216 198 HOH HOH . L 5 HOH C 17 217 60 HOH HOH . L 5 HOH C 18 218 17 HOH HOH . L 5 HOH C 19 219 86 HOH HOH . L 5 HOH C 20 220 84 HOH HOH . L 5 HOH C 21 221 50 HOH HOH . L 5 HOH C 22 222 35 HOH HOH . L 5 HOH C 23 223 199 HOH HOH . L 5 HOH C 24 224 27 HOH HOH . L 5 HOH C 25 225 184 HOH HOH . L 5 HOH C 26 226 5 HOH HOH . L 5 HOH C 27 227 44 HOH HOH . L 5 HOH C 28 228 116 HOH HOH . L 5 HOH C 29 229 72 HOH HOH . L 5 HOH C 30 230 29 HOH HOH . L 5 HOH C 31 231 49 HOH HOH . L 5 HOH C 32 232 79 HOH HOH . L 5 HOH C 33 233 65 HOH HOH . L 5 HOH C 34 234 69 HOH HOH . L 5 HOH C 35 235 159 HOH HOH . L 5 HOH C 36 236 48 HOH HOH . L 5 HOH C 37 237 56 HOH HOH . L 5 HOH C 38 238 96 HOH HOH . L 5 HOH C 39 239 32 HOH HOH . L 5 HOH C 40 240 160 HOH HOH . L 5 HOH C 41 241 12 HOH HOH . L 5 HOH C 42 242 194 HOH HOH . L 5 HOH C 43 243 142 HOH HOH . L 5 HOH C 44 244 143 HOH HOH . L 5 HOH C 45 245 144 HOH HOH . M 5 HOH D 1 101 98 HOH HOH . M 5 HOH D 2 102 77 HOH HOH . M 5 HOH D 3 103 30 HOH HOH . M 5 HOH D 4 104 155 HOH HOH . M 5 HOH D 5 105 15 HOH HOH . M 5 HOH D 6 106 202 HOH HOH . M 5 HOH D 7 107 217 HOH HOH . N 5 HOH E 1 201 211 HOH HOH . N 5 HOH E 2 202 212 HOH HOH . N 5 HOH E 3 203 218 HOH HOH . N 5 HOH E 4 204 129 HOH HOH . N 5 HOH E 5 205 2 HOH HOH . N 5 HOH E 6 206 101 HOH HOH . N 5 HOH E 7 207 11 HOH HOH . N 5 HOH E 8 208 107 HOH HOH . N 5 HOH E 9 209 34 HOH HOH . N 5 HOH E 10 210 170 HOH HOH . N 5 HOH E 11 211 190 HOH HOH . N 5 HOH E 12 212 31 HOH HOH . N 5 HOH E 13 213 19 HOH HOH . N 5 HOH E 14 214 3 HOH HOH . N 5 HOH E 15 215 188 HOH HOH . N 5 HOH E 16 216 111 HOH HOH . N 5 HOH E 17 217 166 HOH HOH . N 5 HOH E 18 218 52 HOH HOH . N 5 HOH E 19 219 36 HOH HOH . N 5 HOH E 20 220 64 HOH HOH . N 5 HOH E 21 221 145 HOH HOH . N 5 HOH E 22 222 68 HOH HOH . N 5 HOH E 23 223 33 HOH HOH . N 5 HOH E 24 224 71 HOH HOH . N 5 HOH E 25 225 149 HOH HOH . N 5 HOH E 26 226 20 HOH HOH . N 5 HOH E 27 227 115 HOH HOH . N 5 HOH E 28 228 10 HOH HOH . N 5 HOH E 29 229 16 HOH HOH . N 5 HOH E 30 230 39 HOH HOH . N 5 HOH E 31 231 110 HOH HOH . N 5 HOH E 32 232 6 HOH HOH . N 5 HOH E 33 233 106 HOH HOH . N 5 HOH E 34 234 209 HOH HOH . N 5 HOH E 35 235 189 HOH HOH . N 5 HOH E 36 236 105 HOH HOH . N 5 HOH E 37 237 85 HOH HOH . N 5 HOH E 38 238 157 HOH HOH . N 5 HOH E 39 239 203 HOH HOH . O 5 HOH F 1 201 75 HOH HOH . O 5 HOH F 2 202 74 HOH HOH . O 5 HOH F 3 203 162 HOH HOH . O 5 HOH F 4 204 63 HOH HOH . O 5 HOH F 5 205 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 -22.868 11.896 32.051 1 55.59 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . G 3 -21.663 11.8 31.282 1 53.7 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . G 3 -22.611 11.426 33.479 1 51.1 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . G 3 -23.774 11.656 34.284 1 58.24 ? O2 EDO 201 A 1 HETATM 5 H H11 EDO . . . G 3 -23.219 12.93 32.06 1 67.04 ? H11 EDO 201 A 1 HETATM 6 H H12 EDO . . . G 3 -23.647 11.281 31.594 1 67.04 ? H12 EDO 201 A 1 HETATM 7 H HO1 EDO . . . G 3 -21.831 12.105 30.38 1 64.78 ? HO1 EDO 201 A 1 HETATM 8 H H21 EDO . . . G 3 -21.759 11.966 33.897 1 61.66 ? H21 EDO 201 A 1 HETATM 9 H H22 EDO . . . G 3 -22.366 10.362 33.479 1 61.66 ? H22 EDO 201 A 1 HETATM 10 H HO2 EDO . . . G 3 -23.601 11.365 35.19 1 70.22 ? HO2 EDO 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #