data_7V07 # _model_server_result.job_id LWmvlop7BWlo3x6vv9tTkQ _model_server_result.datetime_utc '2025-03-06 08:41:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 7V07 # _exptl.entry_id 7V07 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7V07 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 J N N ? 4 K N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O4 HO4 . sing 5 ? 3 6 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 A 1 NAG C 895 NAG 3 n E NAG 2 A 2 NAG C 896 NAG 3 n E BMA 3 A 3 BMA C 898 BMA 3 n E MAN 4 A 4 MAN C 899 MAN 3 n E MAN 5 A 5 MAN C 900 MAN 3 n E FUC 6 A 6 FUC C 897 FUC 3 n F NAG 1 F 1 NAG E 895 NAG 3 n F NAG 2 F 2 NAG E 896 NAG 3 n F BMA 3 F 3 BMA E 898 BMA 3 n F MAN 4 F 4 MAN E 899 MAN 3 n F MAN 5 F 5 MAN E 900 MAN 3 n F FUC 6 F 6 FUC E 897 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C ND2 ASN 642 C ASN 642 1_555 E C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 D ND2 ASN 642 E ASN 642 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 E O4 NAG . A NAG 1 1_555 E C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 E O6 NAG . A NAG 1 1_555 E C1 FUC . A FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 E O4 NAG . A NAG 2 1_555 E C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 E O3 BMA . A BMA 3 1_555 E C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale7 E O4 BMA . A BMA 3 1_555 E C1 MAN . A MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale11 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 F O4 BMA . F BMA 3 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 94 n n C1 C10 CLR sing 95 n n C1 H11 CLR sing 96 n n C1 H12 CLR sing 97 n n C2 C3 CLR sing 98 n n C2 H21 CLR sing 99 n n C2 H22 CLR sing 100 n n C3 C4 CLR sing 101 n n C3 O1 CLR sing 102 n n C3 H3 CLR sing 103 n n C4 C5 CLR sing 104 n n C4 H41 CLR sing 105 n n C4 H42 CLR sing 106 n n C5 C6 CLR doub 107 n n C5 C10 CLR sing 108 n n C6 C7 CLR sing 109 n n C6 H6 CLR sing 110 n n C7 C8 CLR sing 111 n n C7 H71 CLR sing 112 n n C7 H72 CLR sing 113 n n C8 C9 CLR sing 114 n n C8 C14 CLR sing 115 n n C8 H8 CLR sing 116 n n C9 C10 CLR sing 117 n n C9 C11 CLR sing 118 n n C9 H9 CLR sing 119 n n C10 C19 CLR sing 120 n n C11 C12 CLR sing 121 n n C11 H111 CLR sing 122 n n C11 H112 CLR sing 123 n n C12 C13 CLR sing 124 n n C12 H121 CLR sing 125 n n C12 H122 CLR sing 126 n n C13 C14 CLR sing 127 n n C13 C17 CLR sing 128 n n C13 C18 CLR sing 129 n n C14 C15 CLR sing 130 n n C14 H14 CLR sing 131 n n C15 C16 CLR sing 132 n n C15 H151 CLR sing 133 n n C15 H152 CLR sing 134 n n C16 C17 CLR sing 135 n n C16 H161 CLR sing 136 n n C16 H162 CLR sing 137 n n C17 C20 CLR sing 138 n n C17 H17 CLR sing 139 n n C18 H181 CLR sing 140 n n C18 H182 CLR sing 141 n n C18 H183 CLR sing 142 n n C19 H191 CLR sing 143 n n C19 H192 CLR sing 144 n n C19 H193 CLR sing 145 n n C20 C21 CLR sing 146 n n C20 C22 CLR sing 147 n n C20 H20 CLR sing 148 n n C21 H211 CLR sing 149 n n C21 H212 CLR sing 150 n n C21 H213 CLR sing 151 n n C22 C23 CLR sing 152 n n C22 H221 CLR sing 153 n n C22 H222 CLR sing 154 n n C23 C24 CLR sing 155 n n C23 H231 CLR sing 156 n n C23 H232 CLR sing 157 n n C24 C25 CLR sing 158 n n C24 H241 CLR sing 159 n n C24 H242 CLR sing 160 n n C25 C26 CLR sing 161 n n C25 C27 CLR sing 162 n n C25 H25 CLR sing 163 n n C26 H261 CLR sing 164 n n C26 H262 CLR sing 165 n n C26 H263 CLR sing 166 n n C27 H271 CLR sing 167 n n C27 H272 CLR sing 168 n n C27 H273 CLR sing 169 n n O1 H1 CLR sing 170 n n # _atom_sites.entry_id 7V07 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CLR C 1 1001 201 CLR CLR . H 4 CLR C 1 1002 901 CLR CLR . I 5 PLC C 1 1003 899 PLC PLC . J 4 CLR E 1 1001 201 CLR CLR . K 4 CLR E 1 1002 901 CLR CLR . L 5 PLC E 1 1003 898 PLC PLC . M 6 PIO E 1 1004 901 PIO PIO . N 6 PIO E 1 1005 901 PIO PIO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 4 89.069 60.781 110.245 1 45.34 ? C1 CLR 1002 C 1 HETATM 2 C C2 CLR . . . H 4 89.553 61.154 111.646 1 46.05 ? C2 CLR 1002 C 1 HETATM 3 C C3 CLR . . . H 4 90.708 62.123 111.598 1 50.25 ? C3 CLR 1002 C 1 HETATM 4 C C4 CLR . . . H 4 90.326 63.363 110.813 1 47.67 ? C4 CLR 1002 C 1 HETATM 5 C C5 CLR . . . H 4 89.786 63.041 109.436 1 47.49 ? C5 CLR 1002 C 1 HETATM 6 C C6 CLR . . . H 4 90.243 63.659 108.359 1 46.49 ? C6 CLR 1002 C 1 HETATM 7 C C7 CLR . . . H 4 89.605 63.624 107.006 1 47.77 ? C7 CLR 1002 C 1 HETATM 8 C C8 CLR . . . H 4 88.405 62.684 106.91 1 47.44 ? C8 CLR 1002 C 1 HETATM 9 C C9 CLR . . . H 4 88.569 61.511 107.89 1 49.05 ? C9 CLR 1002 C 1 HETATM 10 C C10 CLR . . . H 4 88.687 61.991 109.36 1 47.75 ? C10 CLR 1002 C 1 HETATM 11 C C11 CLR . . . H 4 87.496 60.428 107.69 1 44.47 ? C11 CLR 1002 C 1 HETATM 12 C C12 CLR . . . H 4 87.352 59.97 106.235 1 46.18 ? C12 CLR 1002 C 1 HETATM 13 C C13 CLR . . . H 4 87.105 61.153 105.296 1 44.36 ? C13 CLR 1002 C 1 HETATM 14 C C14 CLR . . . H 4 88.28 62.127 105.5 1 46.06 ? C14 CLR 1002 C 1 HETATM 15 C C15 CLR . . . H 4 88.18 63.098 104.331 1 45.41 ? C15 CLR 1002 C 1 HETATM 16 C C16 CLR . . . H 4 87.662 62.234 103.169 1 46.05 ? C16 CLR 1002 C 1 HETATM 17 C C17 CLR . . . H 4 87.233 60.869 103.768 1 46.46 ? C17 CLR 1002 C 1 HETATM 18 C C18 CLR . . . H 4 85.751 61.803 105.615 1 42.15 ? C18 CLR 1002 C 1 HETATM 19 C C19 CLR . . . H 4 87.383 62.637 109.864 1 41.7 ? C19 CLR 1002 C 1 HETATM 20 C C20 CLR . . . H 4 86.049 60.257 103 1 44.41 ? C20 CLR 1002 C 1 HETATM 21 C C21 CLR . . . H 4 86.057 58.733 103.015 1 44.6 ? C21 CLR 1002 C 1 HETATM 22 C C22 CLR . . . H 4 86.031 60.778 101.556 1 41.86 ? C22 CLR 1002 C 1 HETATM 23 C C23 CLR . . . H 4 85.705 59.75 100.506 1 42.31 ? C23 CLR 1002 C 1 HETATM 24 C C24 CLR . . . H 4 84.291 59.845 100.009 1 42.08 ? C24 CLR 1002 C 1 HETATM 25 C C25 CLR . . . H 4 83.936 58.92 98.849 1 47.72 ? C25 CLR 1002 C 1 HETATM 26 C C26 CLR . . . H 4 82.814 57.963 99.226 1 43.99 ? C26 CLR 1002 C 1 HETATM 27 C C27 CLR . . . H 4 83.566 59.712 97.604 1 44.58 ? C27 CLR 1002 C 1 HETATM 28 O O1 CLR . . . H 4 91.07 62.494 112.935 1 48.45 ? O1 CLR 1002 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #