data_7V07 # _model_server_result.job_id YgMBjBsPUw8uCtCxoT0EJg _model_server_result.datetime_utc '2025-03-06 08:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1003}' # _entry.id 7V07 # _exptl.entry_id 7V07 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 622.834 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7V07 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O4 HO4 . sing 5 ? 3 6 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 A 1 NAG C 895 NAG 3 n E NAG 2 A 2 NAG C 896 NAG 3 n E BMA 3 A 3 BMA C 898 BMA 3 n E MAN 4 A 4 MAN C 899 MAN 3 n E MAN 5 A 5 MAN C 900 MAN 3 n E FUC 6 A 6 FUC C 897 FUC 3 n F NAG 1 F 1 NAG E 895 NAG 3 n F NAG 2 F 2 NAG E 896 NAG 3 n F BMA 3 F 3 BMA E 898 BMA 3 n F MAN 4 F 4 MAN E 899 MAN 3 n F MAN 5 F 5 MAN E 900 MAN 3 n F FUC 6 F 6 FUC E 897 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C ND2 ASN 642 C ASN 642 1_555 E C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 D ND2 ASN 642 E ASN 642 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 E O4 NAG . A NAG 1 1_555 E C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 E O6 NAG . A NAG 1 1_555 E C1 FUC . A FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 E O4 NAG . A NAG 2 1_555 E C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 E O3 BMA . A BMA 3 1_555 E C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale7 E O4 BMA . A BMA 3 1_555 E C1 MAN . A MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale11 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 F O4 BMA . F BMA 3 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 532 n n C1 O3P PLC sing 533 n n C1 H11 PLC sing 534 n n C1 H12 PLC sing 535 n n C2 C3 PLC sing 536 n n C2 O2 PLC sing 537 n n C2 H2 PLC sing 538 n n C3 O3 PLC sing 539 n n C3 H31 PLC sing 540 n n C3 H32 PLC sing 541 n n C4 C5 PLC sing 542 n n C4 O4P PLC sing 543 n n C4 H41 PLC sing 544 n n C4 H42 PLC sing 545 n n C5 N PLC sing 546 n n C5 H51 PLC sing 547 n n C5 H52 PLC sing 548 n n C6 N PLC sing 549 n n C6 H61 PLC sing 550 n n C6 H62 PLC sing 551 n n C6 H63 PLC sing 552 n n C7 N PLC sing 553 n n C7 H71 PLC sing 554 n n C7 H72 PLC sing 555 n n C7 H73 PLC sing 556 n n C8 N PLC sing 557 n n C8 H81 PLC sing 558 n n C8 H82 PLC sing 559 n n C8 H83 PLC sing 560 n n C' C1' PLC sing 561 n n C' O' PLC doub 562 n n C' O2 PLC sing 563 n n C1' C2' PLC sing 564 n n C1' "H1'1" PLC sing 565 n n C1' "H1'2" PLC sing 566 n n C2' C3' PLC sing 567 n n C2' "H2'1" PLC sing 568 n n C2' "H2'2" PLC sing 569 n n C3' C4' PLC sing 570 n n C3' "H3'1" PLC sing 571 n n C3' "H3'2" PLC sing 572 n n C4' C5' PLC sing 573 n n C4' "H4'1" PLC sing 574 n n C4' "H4'2" PLC sing 575 n n C5' C6' PLC sing 576 n n C5' "H5'1" PLC sing 577 n n C5' "H5'2" PLC sing 578 n n C6' C7' PLC sing 579 n n C6' "H6'1" PLC sing 580 n n C6' "H6'2" PLC sing 581 n n C7' C8' PLC sing 582 n n C7' "H7'1" PLC sing 583 n n C7' "H7'2" PLC sing 584 n n C8' C9' PLC sing 585 n n C8' "H8'1" PLC sing 586 n n C8' "H8'2" PLC sing 587 n n C9' CA' PLC sing 588 n n C9' "H9'1" PLC sing 589 n n C9' "H9'2" PLC sing 590 n n CA' CB' PLC sing 591 n n CA' "HT'1" PLC sing 592 n n CA' "HT'2" PLC sing 593 n n CB' "HE'1" PLC sing 594 n n CB' "HE'2" PLC sing 595 n n CB' "HE'3" PLC sing 596 n n CB C1B PLC sing 597 n n CB OB PLC doub 598 n n CB O3 PLC sing 599 n n C1B C2B PLC sing 600 n n C1B H1A1 PLC sing 601 n n C1B H1A2 PLC sing 602 n n C2B C3B PLC sing 603 n n C2B H2A1 PLC sing 604 n n C2B H2A2 PLC sing 605 n n C3B C4B PLC sing 606 n n C3B H3A1 PLC sing 607 n n C3B H3A2 PLC sing 608 n n C4B C5B PLC sing 609 n n C4B H4A1 PLC sing 610 n n C4B H4A2 PLC sing 611 n n C5B C6B PLC sing 612 n n C5B H5A1 PLC sing 613 n n C5B H5A2 PLC sing 614 n n C6B C7B PLC sing 615 n n C6B H6A1 PLC sing 616 n n C6B H6A2 PLC sing 617 n n C7B C8B PLC sing 618 n n C7B H7A1 PLC sing 619 n n C7B H7A2 PLC sing 620 n n C8B C9B PLC sing 621 n n C8B H8A1 PLC sing 622 n n C8B H8A2 PLC sing 623 n n C9B CAA PLC sing 624 n n C9B H9A1 PLC sing 625 n n C9B H9A2 PLC sing 626 n n CAA CBA PLC sing 627 n n CAA HTA1 PLC sing 628 n n CAA HTA2 PLC sing 629 n n CBA HEA1 PLC sing 630 n n CBA HEA2 PLC sing 631 n n CBA HEA3 PLC sing 632 n n O1P P PLC doub 633 n n O2P P PLC sing 634 n n O2P HOP2 PLC sing 635 n n O3P P PLC sing 636 n n O4P P PLC sing 637 n n # _atom_sites.entry_id 7V07 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CLR C 1 1001 201 CLR CLR . H 4 CLR C 1 1002 901 CLR CLR . I 5 PLC C 1 1003 899 PLC PLC . J 4 CLR E 1 1001 201 CLR CLR . K 4 CLR E 1 1002 901 CLR CLR . L 5 PLC E 1 1003 898 PLC PLC . M 6 PIO E 1 1004 901 PIO PIO . N 6 PIO E 1 1005 901 PIO PIO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . L 5 75.194 72.126 54.126 1 52.07 ? C1 PLC 1003 E 1 HETATM 2 C C2 PLC . . . L 5 74.241 72.488 55.241 1 53.44 ? C2 PLC 1003 E 1 HETATM 3 C C3 PLC . . . L 5 74.255 73.956 55.596 1 48.03 ? C3 PLC 1003 E 1 HETATM 4 C C4 PLC . . . L 5 75.509 71.673 49.552 1 53.86 ? C4 PLC 1003 E 1 HETATM 5 C C5 PLC . . . L 5 76.923 71.802 49.039 1 54.1 ? C5 PLC 1003 E 1 HETATM 6 C C6 PLC . . . L 5 78.713 70.251 48.372 1 49.61 ? C6 PLC 1003 E 1 HETATM 7 C C7 PLC . . . L 5 77.405 71.365 46.666 1 53.33 ? C7 PLC 1003 E 1 HETATM 8 C C8 PLC . . . L 5 76.399 69.628 48.019 1 51.72 ? C8 PLC 1003 E 1 HETATM 9 C C' PLC . . . L 5 72.233 71.291 55.704 1 55.33 ? C' PLC 1003 E 1 HETATM 10 C C1' PLC . . . L 5 71.631 71.995 56.882 1 51.96 ? C1' PLC 1003 E 1 HETATM 11 C C2' PLC . . . L 5 71.975 71.345 58.178 1 47.26 ? C2' PLC 1003 E 1 HETATM 12 C C3' PLC . . . L 5 72.51 72.322 59.204 1 47.09 ? C3' PLC 1003 E 1 HETATM 13 C C4' PLC . . . L 5 72.255 71.892 60.62 1 45.65 ? C4' PLC 1003 E 1 HETATM 14 C C5' PLC . . . L 5 73.064 72.623 61.649 1 45.84 ? C5' PLC 1003 E 1 HETATM 15 C C6' PLC . . . L 5 73.446 71.776 62.831 1 45.87 ? C6' PLC 1003 E 1 HETATM 16 C C7' PLC . . . L 5 73.022 72.343 64.155 1 47.5 ? C7' PLC 1003 E 1 HETATM 17 C C8' PLC . . . L 5 73.539 73.727 64.422 1 49.66 ? C8' PLC 1003 E 1 HETATM 18 C C9' PLC . . . L 5 73.051 74.322 65.717 1 51.95 ? C9' PLC 1003 E 1 HETATM 19 C CA' PLC . . . L 5 73.776 73.828 66.939 1 48.18 ? CA' PLC 1003 E 1 HETATM 20 C CB' PLC . . . L 5 73.504 74.657 68.165 1 47.81 ? CB' PLC 1003 E 1 HETATM 21 C CB PLC . . . L 5 75.872 74.449 57.219 1 49.39 ? CB PLC 1003 E 1 HETATM 22 C C1B PLC . . . L 5 76.078 74.807 58.659 1 50.7 ? C1B PLC 1003 E 1 HETATM 23 C C2B PLC . . . L 5 75.874 73.659 59.589 1 46.73 ? C2B PLC 1003 E 1 HETATM 24 C C3B PLC . . . L 5 77.022 73.495 60.565 1 47 ? C3B PLC 1003 E 1 HETATM 25 C C4B PLC . . . L 5 76.608 73.503 62.01 1 51.22 ? C4B PLC 1003 E 1 HETATM 26 C C5B PLC . . . L 5 77.405 74.446 62.877 1 49.7 ? C5B PLC 1003 E 1 HETATM 27 C C6B PLC . . . L 5 77.374 74.11 64.349 1 46.32 ? C6B PLC 1003 E 1 HETATM 28 C C7B PLC . . . L 5 78.434 74.801 65.172 1 51.31 ? C7B PLC 1003 E 1 HETATM 29 C C8B PLC . . . L 5 78.547 74.286 66.586 1 51.89 ? C8B PLC 1003 E 1 HETATM 30 C C9B PLC . . . L 5 79.958 74.221 67.117 1 52.04 ? C9B PLC 1003 E 1 HETATM 31 C CAA PLC . . . L 5 80.36 72.923 67.768 1 50.39 ? CAA PLC 1003 E 1 HETATM 32 C CBA PLC . . . L 5 80.887 73.085 69.171 1 47.72 ? CBA PLC 1003 E 1 HETATM 33 O O' PLC . . . L 5 72.168 70.109 55.524 1 48.09 ? O' PLC 1003 E 1 HETATM 34 O OB PLC . . . L 5 76.71 74.488 56.362 1 51.94 ? OB PLC 1003 E 1 HETATM 35 O O2 PLC . . . L 5 72.89 72.106 54.87 1 57.91 ? O2 PLC 1003 E 1 HETATM 36 O O3 PLC . . . L 5 74.623 74.076 56.986 1 48.43 ? O3 PLC 1003 E 1 HETATM 37 O O1P PLC . . . L 5 74.66 74.128 50.858 1 58.14 ? O1P PLC 1003 E 1 HETATM 38 O O2P PLC . . . L 5 73.2 72.274 51.966 1 55.3 ? O2P PLC 1003 E 1 HETATM 39 O O3P PLC . . . L 5 75.242 73.159 53.11 1 59.73 ? O3P PLC 1003 E 1 HETATM 40 O O4P PLC . . . L 5 75.49 71.78 51.002 1 53.12 ? O4P PLC 1003 E 1 HETATM 41 N N PLC . . . L 5 77.361 70.763 48.025 1 59.76 ? N PLC 1003 E 1 HETATM 42 P P PLC . . . L 5 74.547 72.882 51.69 1 75.45 ? P PLC 1003 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 42 #