data_7V0F # _model_server_result.job_id Mgk2P_l09gxdxygVEWpXyg _model_server_result.datetime_utc '2025-04-19 10:46:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7V0F # _exptl.entry_id 7V0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7V0F _cell.length_a 84.06 _cell.length_b 84.06 _cell.length_c 122.42 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 84.06 -84.06 0 3 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -84.06 0 4 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 84.06 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 20 A CYS 18 1_555 E ZN ZN . A ZN 303 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A SG CYS 25 A CYS 23 1_555 E ZN ZN . A ZN 303 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A ND1 HIS 30 A HIS 28 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 A NE2 HIS 32 A HIS 30 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A NE2 HIS 47 A HIS 45 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc6 A NE2 HIS 70 A HIS 68 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 A NE2 HIS 190 A HIS 188 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 I O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 I O HOH . A HOH 424 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc10 D ZN ZN . A ZN 302 1_555 B NE2 HIS 70 B HIS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 B ND1 HIS 30 B HIS 28 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 B NE2 HIS 32 B HIS 30 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc13 B NE2 HIS 47 B HIS 45 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc14 G ZN ZN . B ZN 201 1_555 J O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc15 G ZN ZN . B ZN 201 1_555 J O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7V0F _atom_sites.fract_transf_matrix[1][1] 0.011896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 301 EDO EDO . D 3 ZN A 1 302 501 ZN ZN . E 3 ZN A 1 303 502 ZN ZN . F 4 PEG A 1 304 503 PEG PEG . G 3 ZN B 1 201 503 ZN ZN . H 3 ZN B 1 202 504 ZN ZN . I 5 HOH A 1 401 17 HOH HOH . I 5 HOH A 2 402 11 HOH HOH . I 5 HOH A 3 403 16 HOH HOH . I 5 HOH A 4 404 9 HOH HOH . I 5 HOH A 5 405 24 HOH HOH . I 5 HOH A 6 406 5 HOH HOH . I 5 HOH A 7 407 27 HOH HOH . I 5 HOH A 8 408 31 HOH HOH . I 5 HOH A 9 409 8 HOH HOH . I 5 HOH A 10 410 2 HOH HOH . I 5 HOH A 11 411 29 HOH HOH . I 5 HOH A 12 412 6 HOH HOH . I 5 HOH A 13 413 20 HOH HOH . I 5 HOH A 14 414 3 HOH HOH . I 5 HOH A 15 415 32 HOH HOH . I 5 HOH A 16 416 36 HOH HOH . I 5 HOH A 17 417 4 HOH HOH . I 5 HOH A 18 418 30 HOH HOH . I 5 HOH A 19 419 1 HOH HOH . I 5 HOH A 20 420 7 HOH HOH . I 5 HOH A 21 421 12 HOH HOH . I 5 HOH A 22 422 22 HOH HOH . I 5 HOH A 23 423 23 HOH HOH . I 5 HOH A 24 424 35 HOH HOH . J 5 HOH B 1 301 10 HOH HOH . J 5 HOH B 2 302 26 HOH HOH . J 5 HOH B 3 303 28 HOH HOH . J 5 HOH B 4 304 15 HOH HOH . J 5 HOH B 5 305 18 HOH HOH . J 5 HOH B 6 306 13 HOH HOH . J 5 HOH B 7 307 19 HOH HOH . J 5 HOH B 8 308 14 HOH HOH . J 5 HOH B 9 309 33 HOH HOH . J 5 HOH B 10 310 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 5.597 -44.418 -15.883 1 53.37 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . C 2 4.988 -44.947 -17.064 1 53.2 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . C 2 4.651 -43.542 -15.063 1 54.45 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . C 2 5.144 -43.427 -13.707 1 57.78 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #