data_7V1C
#
_model_server_result.job_id            V7gD18qAbX4O4I1ia_onqw 
_model_server_result.datetime_utc      '2024-11-19 08:26:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7v1c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    7V1C 
#
_exptl.entry_id    7V1C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.387 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SINEFUNGIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.31 
_cell.angle_gamma         90 
_cell.entry_id            7V1C 
_cell.length_a            35.253 
_cell.length_b            91.102 
_cell.length_c            45.901 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7V1C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N7 O5' 
_chem_comp.formula_weight    381.387 
_chem_comp.id                SFG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SINEFUNGIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ADENOSYL-ORNITHINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SFG sing 319 n n 
N HN1 SFG sing 320 n n 
N HN2 SFG sing 321 n n 
CA C SFG sing 322 n n 
CA CB SFG sing 323 n n 
CA HA SFG sing 324 n n 
C O SFG doub 325 n n 
C OXT SFG sing 326 n n 
OXT HXT SFG sing 327 n n 
CB CG SFG sing 328 n n 
CB HB1 SFG sing 329 n n 
CB HB2 SFG sing 330 n n 
CG CD SFG sing 331 n n 
CG HG1 SFG sing 332 n n 
CG HG2 SFG sing 333 n n 
CD NE SFG sing 334 n n 
CD C5' SFG sing 335 n n 
CD HD SFG sing 336 n n 
NE HNE1 SFG sing 337 n n 
NE HNE2 SFG sing 338 n n 
C5' C4' SFG sing 339 n n 
C5' "H5'1" SFG sing 340 n n 
C5' "H5'2" SFG sing 341 n n 
C4' O4' SFG sing 342 n n 
C4' C3' SFG sing 343 n n 
C4' H4' SFG sing 344 n n 
O4' C1' SFG sing 345 n n 
C3' O3' SFG sing 346 n n 
C3' C2' SFG sing 347 n n 
C3' H3' SFG sing 348 n n 
O3' HO3' SFG sing 349 n n 
C2' O2' SFG sing 350 n n 
C2' C1' SFG sing 351 n n 
C2' H2' SFG sing 352 n n 
O2' HO2' SFG sing 353 n n 
C1' N9 SFG sing 354 n n 
C1' H1' SFG sing 355 n n 
N9 C8 SFG sing 356 n y 
N9 C4 SFG sing 357 n y 
C8 N7 SFG doub 358 n y 
C8 H8 SFG sing 359 n n 
N7 C5 SFG sing 360 n y 
C5 C6 SFG sing 361 n y 
C5 C4 SFG doub 362 n y 
C6 N6 SFG sing 363 n n 
C6 N1 SFG doub 364 n y 
N6 HN61 SFG sing 365 n n 
N6 HN62 SFG sing 366 n n 
N1 C2 SFG sing 367 n y 
C2 N3 SFG doub 368 n y 
C2 H2 SFG sing 369 n n 
N3 C4 SFG sing 370 n y 
#
_atom_sites.entry_id                     7V1C 
_atom_sites.fract_transf_matrix[1][1]    0.028366 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000647 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021792 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEG A 1 401 401 PEG PEG . 
C 3 GOL A 1 402 501 GOL GOL . 
D 2 PEG A 1 403 601 PEG PEG . 
E 4 SFG A 1 404 701 SFG SFG . 
F 5 HOH A 1 501 208 HOH HOH . 
F 5 HOH A 2 502 37 HOH HOH . 
F 5 HOH A 3 503 66 HOH HOH . 
F 5 HOH A 4 504 189 HOH HOH . 
F 5 HOH A 5 505 116 HOH HOH . 
F 5 HOH A 6 506 190 HOH HOH . 
F 5 HOH A 7 507 81 HOH HOH . 
F 5 HOH A 8 508 30 HOH HOH . 
F 5 HOH A 9 509 214 HOH HOH . 
F 5 HOH A 10 510 83 HOH HOH . 
F 5 HOH A 11 511 59 HOH HOH . 
F 5 HOH A 12 512 7 HOH HOH . 
F 5 HOH A 13 513 2 HOH HOH . 
F 5 HOH A 14 514 76 HOH HOH . 
F 5 HOH A 15 515 77 HOH HOH . 
F 5 HOH A 16 516 82 HOH HOH . 
F 5 HOH A 17 517 150 HOH HOH . 
F 5 HOH A 18 518 186 HOH HOH . 
F 5 HOH A 19 519 62 HOH HOH . 
F 5 HOH A 20 520 100 HOH HOH . 
F 5 HOH A 21 521 247 HOH HOH . 
F 5 HOH A 22 522 11 HOH HOH . 
F 5 HOH A 23 523 18 HOH HOH . 
F 5 HOH A 24 524 64 HOH HOH . 
F 5 HOH A 25 525 74 HOH HOH . 
F 5 HOH A 26 526 114 HOH HOH . 
F 5 HOH A 27 527 194 HOH HOH . 
F 5 HOH A 28 528 44 HOH HOH . 
F 5 HOH A 29 529 35 HOH HOH . 
F 5 HOH A 30 530 15 HOH HOH . 
F 5 HOH A 31 531 191 HOH HOH . 
F 5 HOH A 32 532 33 HOH HOH . 
F 5 HOH A 33 533 106 HOH HOH . 
F 5 HOH A 34 534 133 HOH HOH . 
F 5 HOH A 35 535 40 HOH HOH . 
F 5 HOH A 36 536 4 HOH HOH . 
F 5 HOH A 37 537 58 HOH HOH . 
F 5 HOH A 38 538 101 HOH HOH . 
F 5 HOH A 39 539 57 HOH HOH . 
F 5 HOH A 40 540 206 HOH HOH . 
F 5 HOH A 41 541 43 HOH HOH . 
F 5 HOH A 42 542 160 HOH HOH . 
F 5 HOH A 43 543 38 HOH HOH . 
F 5 HOH A 44 544 192 HOH HOH . 
F 5 HOH A 45 545 31 HOH HOH . 
F 5 HOH A 46 546 250 HOH HOH . 
F 5 HOH A 47 547 104 HOH HOH . 
F 5 HOH A 48 548 193 HOH HOH . 
F 5 HOH A 49 549 96 HOH HOH . 
F 5 HOH A 50 550 61 HOH HOH . 
F 5 HOH A 51 551 92 HOH HOH . 
F 5 HOH A 52 552 153 HOH HOH . 
F 5 HOH A 53 553 75 HOH HOH . 
F 5 HOH A 54 554 91 HOH HOH . 
F 5 HOH A 55 555 17 HOH HOH . 
F 5 HOH A 56 556 45 HOH HOH . 
F 5 HOH A 57 557 109 HOH HOH . 
F 5 HOH A 58 558 19 HOH HOH . 
F 5 HOH A 59 559 120 HOH HOH . 
F 5 HOH A 60 560 52 HOH HOH . 
F 5 HOH A 61 561 41 HOH HOH . 
F 5 HOH A 62 562 6 HOH HOH . 
F 5 HOH A 63 563 215 HOH HOH . 
F 5 HOH A 64 564 51 HOH HOH . 
F 5 HOH A 65 565 36 HOH HOH . 
F 5 HOH A 66 566 207 HOH HOH . 
F 5 HOH A 67 567 14 HOH HOH . 
F 5 HOH A 68 568 143 HOH HOH . 
F 5 HOH A 69 569 24 HOH HOH . 
F 5 HOH A 70 570 102 HOH HOH . 
F 5 HOH A 71 571 184 HOH HOH . 
F 5 HOH A 72 572 54 HOH HOH . 
F 5 HOH A 73 573 146 HOH HOH . 
F 5 HOH A 74 574 88 HOH HOH . 
F 5 HOH A 75 575 32 HOH HOH . 
F 5 HOH A 76 576 142 HOH HOH . 
F 5 HOH A 77 577 34 HOH HOH . 
F 5 HOH A 78 578 46 HOH HOH . 
F 5 HOH A 79 579 135 HOH HOH . 
F 5 HOH A 80 580 68 HOH HOH . 
F 5 HOH A 81 581 134 HOH HOH . 
F 5 HOH A 82 582 130 HOH HOH . 
F 5 HOH A 83 583 129 HOH HOH . 
F 5 HOH A 84 584 26 HOH HOH . 
F 5 HOH A 85 585 229 HOH HOH . 
F 5 HOH A 86 586 29 HOH HOH . 
F 5 HOH A 87 587 86 HOH HOH . 
F 5 HOH A 88 588 97 HOH HOH . 
F 5 HOH A 89 589 147 HOH HOH . 
F 5 HOH A 90 590 223 HOH HOH . 
F 5 HOH A 91 591 115 HOH HOH . 
F 5 HOH A 92 592 123 HOH HOH . 
F 5 HOH A 93 593 56 HOH HOH . 
F 5 HOH A 94 594 99 HOH HOH . 
F 5 HOH A 95 595 103 HOH HOH . 
F 5 HOH A 96 596 164 HOH HOH . 
F 5 HOH A 97 597 154 HOH HOH . 
F 5 HOH A 98 598 23 HOH HOH . 
F 5 HOH A 99 599 21 HOH HOH . 
F 5 HOH A 100 600 183 HOH HOH . 
F 5 HOH A 101 601 174 HOH HOH . 
F 5 HOH A 102 602 47 HOH HOH . 
F 5 HOH A 103 603 60 HOH HOH . 
F 5 HOH A 104 604 156 HOH HOH . 
F 5 HOH A 105 605 20 HOH HOH . 
F 5 HOH A 106 606 9 HOH HOH . 
F 5 HOH A 107 607 107 HOH HOH . 
F 5 HOH A 108 608 245 HOH HOH . 
F 5 HOH A 109 609 181 HOH HOH . 
F 5 HOH A 110 610 163 HOH HOH . 
F 5 HOH A 111 611 222 HOH HOH . 
F 5 HOH A 112 612 70 HOH HOH . 
F 5 HOH A 113 613 49 HOH HOH . 
F 5 HOH A 114 614 128 HOH HOH . 
F 5 HOH A 115 615 140 HOH HOH . 
F 5 HOH A 116 616 27 HOH HOH . 
F 5 HOH A 117 617 108 HOH HOH . 
F 5 HOH A 118 618 69 HOH HOH . 
F 5 HOH A 119 619 176 HOH HOH . 
F 5 HOH A 120 620 152 HOH HOH . 
F 5 HOH A 121 621 10 HOH HOH . 
F 5 HOH A 122 622 98 HOH HOH . 
F 5 HOH A 123 623 71 HOH HOH . 
F 5 HOH A 124 624 122 HOH HOH . 
F 5 HOH A 125 625 67 HOH HOH . 
F 5 HOH A 126 626 227 HOH HOH . 
F 5 HOH A 127 627 48 HOH HOH . 
F 5 HOH A 128 628 89 HOH HOH . 
F 5 HOH A 129 629 168 HOH HOH . 
F 5 HOH A 130 630 113 HOH HOH . 
F 5 HOH A 131 631 72 HOH HOH . 
F 5 HOH A 132 632 105 HOH HOH . 
F 5 HOH A 133 633 85 HOH HOH . 
F 5 HOH A 134 634 180 HOH HOH . 
F 5 HOH A 135 635 112 HOH HOH . 
F 5 HOH A 136 636 138 HOH HOH . 
F 5 HOH A 137 637 209 HOH HOH . 
F 5 HOH A 138 638 118 HOH HOH . 
F 5 HOH A 139 639 173 HOH HOH . 
F 5 HOH A 140 640 84 HOH HOH . 
F 5 HOH A 141 641 55 HOH HOH . 
F 5 HOH A 142 642 137 HOH HOH . 
F 5 HOH A 143 643 73 HOH HOH . 
F 5 HOH A 144 644 141 HOH HOH . 
F 5 HOH A 145 645 127 HOH HOH . 
F 5 HOH A 146 646 25 HOH HOH . 
F 5 HOH A 147 647 136 HOH HOH . 
F 5 HOH A 148 648 178 HOH HOH . 
F 5 HOH A 149 649 28 HOH HOH . 
F 5 HOH A 150 650 39 HOH HOH . 
F 5 HOH A 151 651 149 HOH HOH . 
F 5 HOH A 152 652 125 HOH HOH . 
F 5 HOH A 153 653 22 HOH HOH . 
F 5 HOH A 154 654 87 HOH HOH . 
F 5 HOH A 155 655 182 HOH HOH . 
F 5 HOH A 156 656 110 HOH HOH . 
F 5 HOH A 157 657 199 HOH HOH . 
F 5 HOH A 158 658 224 HOH HOH . 
F 5 HOH A 159 659 185 HOH HOH . 
F 5 HOH A 160 660 94 HOH HOH . 
F 5 HOH A 161 661 119 HOH HOH . 
F 5 HOH A 162 662 90 HOH HOH . 
F 5 HOH A 163 663 242 HOH HOH . 
F 5 HOH A 164 664 170 HOH HOH . 
F 5 HOH A 165 665 228 HOH HOH . 
F 5 HOH A 166 666 202 HOH HOH . 
F 5 HOH A 167 667 132 HOH HOH . 
F 5 HOH A 168 668 251 HOH HOH . 
F 5 HOH A 169 669 167 HOH HOH . 
F 5 HOH A 170 670 197 HOH HOH . 
F 5 HOH A 171 671 226 HOH HOH . 
F 5 HOH A 172 672 220 HOH HOH . 
F 5 HOH A 173 673 248 HOH HOH . 
F 5 HOH A 174 674 151 HOH HOH . 
F 5 HOH A 175 675 246 HOH HOH . 
F 5 HOH A 176 676 95 HOH HOH . 
F 5 HOH A 177 677 211 HOH HOH . 
F 5 HOH A 178 678 252 HOH HOH . 
F 5 HOH A 179 679 235 HOH HOH . 
F 5 HOH A 180 680 234 HOH HOH . 
F 5 HOH A 181 681 177 HOH HOH . 
F 5 HOH A 182 682 111 HOH HOH . 
F 5 HOH A 183 683 124 HOH HOH . 
F 5 HOH A 184 684 196 HOH HOH . 
F 5 HOH A 185 685 225 HOH HOH . 
F 5 HOH A 186 686 212 HOH HOH . 
F 5 HOH A 187 687 237 HOH HOH . 
F 5 HOH A 188 688 148 HOH HOH . 
F 5 HOH A 189 689 171 HOH HOH . 
F 5 HOH A 190 690 230 HOH HOH . 
F 5 HOH A 191 691 241 HOH HOH . 
F 5 HOH A 192 692 187 HOH HOH . 
F 5 HOH A 193 693 210 HOH HOH . 
F 5 HOH A 194 694 158 HOH HOH . 
F 5 HOH A 195 695 201 HOH HOH . 
F 5 HOH A 196 696 249 HOH HOH . 
F 5 HOH A 197 697 213 HOH HOH . 
F 5 HOH A 198 698 231 HOH HOH . 
F 5 HOH A 199 699 239 HOH HOH . 
F 5 HOH A 200 700 236 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SFG . . . E 4 14.156 -21.642 18.941 1 20.67 ? N SFG 404 A 1 
HETATM 2 C CA SFG . . . E 4 14.753 -22.393 20.036 1 19.27 ? CA SFG 404 A 1 
HETATM 3 C C SFG . . . E 4 13.703 -22.614 21.124 1 21.2 ? C SFG 404 A 1 
HETATM 4 O O SFG . . . E 4 12.562 -22.117 20.992 1 26.8 -1 O SFG 404 A 1 
HETATM 5 O OXT SFG . . . E 4 13.961 -23.34 22.129 1 21.95 ? OXT SFG 404 A 1 
HETATM 6 C CB SFG . . . E 4 15.978 -21.679 20.617 1 17.62 ? CB SFG 404 A 1 
HETATM 7 C CG SFG . . . E 4 17.168 -21.689 19.632 1 20.85 ? CG SFG 404 A 1 
HETATM 8 C CD SFG . . . E 4 18.466 -21.058 20.203 1 21.08 ? CD SFG 404 A 1 
HETATM 9 N NE SFG . . . E 4 18.232 -19.692 20.406 1 26.53 ? NE SFG 404 A 1 
HETATM 10 C C5' SFG . . . E 4 19.636 -21.215 19.184 1 20.48 ? C5' SFG 404 A 1 
HETATM 11 C C4' SFG . . . E 4 20.168 -22.605 19.16 1 25.79 ? C4' SFG 404 A 1 
HETATM 12 O O4' SFG . . . E 4 20.997 -22.78 17.996 1 20.48 ? O4' SFG 404 A 1 
HETATM 13 C C3' SFG . . . E 4 21.059 -22.881 20.395 1 22.32 ? C3' SFG 404 A 1 
HETATM 14 O O3' SFG . . . E 4 20.584 -24.065 21.08 1 18.89 ? O3' SFG 404 A 1 
HETATM 15 C C2' SFG . . . E 4 22.47 -23.122 19.754 1 25.17 ? C2' SFG 404 A 1 
HETATM 16 O O2' SFG . . . E 4 23.127 -24.181 20.44 1 20.32 ? O2' SFG 404 A 1 
HETATM 17 C C1' SFG . . . E 4 22.096 -23.601 18.356 1 26.15 ? C1' SFG 404 A 1 
HETATM 18 N N9 SFG . . . E 4 23.156 -23.362 17.369 1 23.98 ? N9 SFG 404 A 1 
HETATM 19 C C8 SFG . . . E 4 23.967 -22.294 17.347 1 24.6 ? C8 SFG 404 A 1 
HETATM 20 N N7 SFG . . . E 4 24.818 -22.391 16.324 1 24.03 ? N7 SFG 404 A 1 
HETATM 21 C C5 SFG . . . E 4 24.533 -23.541 15.664 1 27.18 ? C5 SFG 404 A 1 
HETATM 22 C C6 SFG . . . E 4 25.049 -24.183 14.512 1 23.89 ? C6 SFG 404 A 1 
HETATM 23 N N6 SFG . . . E 4 26.068 -23.646 13.85 1 27.86 ? N6 SFG 404 A 1 
HETATM 24 N N1 SFG . . . E 4 24.512 -25.355 14.104 1 22.05 ? N1 SFG 404 A 1 
HETATM 25 C C2 SFG . . . E 4 23.515 -25.837 14.82 1 25.83 ? C2 SFG 404 A 1 
HETATM 26 N N3 SFG . . . E 4 22.951 -25.319 15.903 1 23.85 ? N3 SFG 404 A 1 
HETATM 27 C C4 SFG . . . E 4 23.468 -24.138 16.337 1 21.74 ? C4 SFG 404 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#