data_7V1E # _model_server_result.job_id xOl0FjgxoaHsvfOtfUZtDA _model_server_result.datetime_utc '2024-11-01 11:28:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7V1E # _exptl.entry_id 7V1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.77 _cell.angle_gamma 90 _cell.entry_id 7V1E _cell.length_a 35.073 _cell.length_b 90.396 _cell.length_c 45.366 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O16 V9G . A V9G 303 1_555 E P 5GP . A 5GP 304 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.605 ? covale ? covale2 D O16 V9G . A V9G 303 1_555 E P 5GP . A 5GP 304 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.605 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 330 n n N HN1 SAH sing 331 n n N HN2 SAH sing 332 n n CA CB SAH sing 333 n n CA C SAH sing 334 n n CA HA SAH sing 335 n n CB CG SAH sing 336 n n CB HB1 SAH sing 337 n n CB HB2 SAH sing 338 n n CG SD SAH sing 339 n n CG HG1 SAH sing 340 n n CG HG2 SAH sing 341 n n SD C5' SAH sing 342 n n C O SAH doub 343 n n C OXT SAH sing 344 n n OXT HXT SAH sing 345 n n C5' C4' SAH sing 346 n n C5' "H5'1" SAH sing 347 n n C5' "H5'2" SAH sing 348 n n C4' O4' SAH sing 349 n n C4' C3' SAH sing 350 n n C4' H4' SAH sing 351 n n O4' C1' SAH sing 352 n n C3' O3' SAH sing 353 n n C3' C2' SAH sing 354 n n C3' H3' SAH sing 355 n n O3' HO3' SAH sing 356 n n C2' O2' SAH sing 357 n n C2' C1' SAH sing 358 n n C2' H2' SAH sing 359 n n O2' HO2' SAH sing 360 n n C1' N9 SAH sing 361 n n C1' H1' SAH sing 362 n n N9 C8 SAH sing 363 n y N9 C4 SAH sing 364 n y C8 N7 SAH doub 365 n y C8 H8 SAH sing 366 n n N7 C5 SAH sing 367 n y C5 C6 SAH sing 368 n y C5 C4 SAH doub 369 n y C6 N6 SAH sing 370 n n C6 N1 SAH doub 371 n y N6 HN61 SAH sing 372 n n N6 HN62 SAH sing 373 n n N1 C2 SAH sing 374 n y C2 N3 SAH doub 375 n y C2 H2 SAH sing 376 n n N3 C4 SAH sing 377 n y # _atom_sites.entry_id 7V1E _atom_sites.fract_transf_matrix[1][1] 0.028512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000383 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 7 GOL GOL . C 3 SAH A 1 302 51 SAH SAH . D 4 V9G A 1 303 2 V9G V9G . E 5 5GP A 1 304 3 5GP 5GP . F 6 HOH A 1 401 191 HOH HOH . F 6 HOH A 2 402 196 HOH HOH . F 6 HOH A 3 403 110 HOH HOH . F 6 HOH A 4 404 64 HOH HOH . F 6 HOH A 5 405 104 HOH HOH . F 6 HOH A 6 406 134 HOH HOH . F 6 HOH A 7 407 148 HOH HOH . F 6 HOH A 8 408 52 HOH HOH . F 6 HOH A 9 409 88 HOH HOH . F 6 HOH A 10 410 16 HOH HOH . F 6 HOH A 11 411 142 HOH HOH . F 6 HOH A 12 412 10 HOH HOH . F 6 HOH A 13 413 99 HOH HOH . F 6 HOH A 14 414 181 HOH HOH . F 6 HOH A 15 415 187 HOH HOH . F 6 HOH A 16 416 174 HOH HOH . F 6 HOH A 17 417 205 HOH HOH . F 6 HOH A 18 418 28 HOH HOH . F 6 HOH A 19 419 243 HOH HOH . F 6 HOH A 20 420 209 HOH HOH . F 6 HOH A 21 421 225 HOH HOH . F 6 HOH A 22 422 207 HOH HOH . F 6 HOH A 23 423 50 HOH HOH . F 6 HOH A 24 424 138 HOH HOH . F 6 HOH A 25 425 144 HOH HOH . F 6 HOH A 26 426 47 HOH HOH . F 6 HOH A 27 427 58 HOH HOH . F 6 HOH A 28 428 42 HOH HOH . F 6 HOH A 29 429 238 HOH HOH . F 6 HOH A 30 430 240 HOH HOH . F 6 HOH A 31 431 2 HOH HOH . F 6 HOH A 32 432 188 HOH HOH . F 6 HOH A 33 433 91 HOH HOH . F 6 HOH A 34 434 23 HOH HOH . F 6 HOH A 35 435 221 HOH HOH . F 6 HOH A 36 436 37 HOH HOH . F 6 HOH A 37 437 26 HOH HOH . F 6 HOH A 38 438 39 HOH HOH . F 6 HOH A 39 439 116 HOH HOH . F 6 HOH A 40 440 245 HOH HOH . F 6 HOH A 41 441 43 HOH HOH . F 6 HOH A 42 442 8 HOH HOH . F 6 HOH A 43 443 182 HOH HOH . F 6 HOH A 44 444 140 HOH HOH . F 6 HOH A 45 445 171 HOH HOH . F 6 HOH A 46 446 75 HOH HOH . F 6 HOH A 47 447 106 HOH HOH . F 6 HOH A 48 448 153 HOH HOH . F 6 HOH A 49 449 123 HOH HOH . F 6 HOH A 50 450 74 HOH HOH . F 6 HOH A 51 451 44 HOH HOH . F 6 HOH A 52 452 185 HOH HOH . F 6 HOH A 53 453 121 HOH HOH . F 6 HOH A 54 454 241 HOH HOH . F 6 HOH A 55 455 179 HOH HOH . F 6 HOH A 56 456 77 HOH HOH . F 6 HOH A 57 457 76 HOH HOH . F 6 HOH A 58 458 208 HOH HOH . F 6 HOH A 59 459 272 HOH HOH . F 6 HOH A 60 460 239 HOH HOH . F 6 HOH A 61 461 21 HOH HOH . F 6 HOH A 62 462 190 HOH HOH . F 6 HOH A 63 463 234 HOH HOH . F 6 HOH A 64 464 103 HOH HOH . F 6 HOH A 65 465 160 HOH HOH . F 6 HOH A 66 466 115 HOH HOH . F 6 HOH A 67 467 3 HOH HOH . F 6 HOH A 68 468 70 HOH HOH . F 6 HOH A 69 469 173 HOH HOH . F 6 HOH A 70 470 149 HOH HOH . F 6 HOH A 71 471 267 HOH HOH . F 6 HOH A 72 472 130 HOH HOH . F 6 HOH A 73 473 71 HOH HOH . F 6 HOH A 74 474 263 HOH HOH . F 6 HOH A 75 475 126 HOH HOH . F 6 HOH A 76 476 22 HOH HOH . F 6 HOH A 77 477 223 HOH HOH . F 6 HOH A 78 478 233 HOH HOH . F 6 HOH A 79 479 117 HOH HOH . F 6 HOH A 80 480 55 HOH HOH . F 6 HOH A 81 481 161 HOH HOH . F 6 HOH A 82 482 15 HOH HOH . F 6 HOH A 83 483 204 HOH HOH . F 6 HOH A 84 484 94 HOH HOH . F 6 HOH A 85 485 169 HOH HOH . F 6 HOH A 86 486 32 HOH HOH . F 6 HOH A 87 487 1 HOH HOH . F 6 HOH A 88 488 45 HOH HOH . F 6 HOH A 89 489 248 HOH HOH . F 6 HOH A 90 490 200 HOH HOH . F 6 HOH A 91 491 14 HOH HOH . F 6 HOH A 92 492 18 HOH HOH . F 6 HOH A 93 493 214 HOH HOH . F 6 HOH A 94 494 119 HOH HOH . F 6 HOH A 95 495 128 HOH HOH . F 6 HOH A 96 496 136 HOH HOH . F 6 HOH A 97 497 132 HOH HOH . F 6 HOH A 98 498 4 HOH HOH . F 6 HOH A 99 499 95 HOH HOH . F 6 HOH A 100 500 111 HOH HOH . F 6 HOH A 101 501 131 HOH HOH . F 6 HOH A 102 502 162 HOH HOH . F 6 HOH A 103 503 154 HOH HOH . F 6 HOH A 104 504 118 HOH HOH . F 6 HOH A 105 505 38 HOH HOH . F 6 HOH A 106 506 66 HOH HOH . F 6 HOH A 107 507 212 HOH HOH . F 6 HOH A 108 508 125 HOH HOH . F 6 HOH A 109 509 253 HOH HOH . F 6 HOH A 110 510 135 HOH HOH . F 6 HOH A 111 511 215 HOH HOH . F 6 HOH A 112 512 33 HOH HOH . F 6 HOH A 113 513 177 HOH HOH . F 6 HOH A 114 514 46 HOH HOH . F 6 HOH A 115 515 54 HOH HOH . F 6 HOH A 116 516 25 HOH HOH . F 6 HOH A 117 517 90 HOH HOH . F 6 HOH A 118 518 63 HOH HOH . F 6 HOH A 119 519 34 HOH HOH . F 6 HOH A 120 520 252 HOH HOH . F 6 HOH A 121 521 158 HOH HOH . F 6 HOH A 122 522 265 HOH HOH . F 6 HOH A 123 523 87 HOH HOH . F 6 HOH A 124 524 218 HOH HOH . F 6 HOH A 125 525 49 HOH HOH . F 6 HOH A 126 526 27 HOH HOH . F 6 HOH A 127 527 82 HOH HOH . F 6 HOH A 128 528 129 HOH HOH . F 6 HOH A 129 529 31 HOH HOH . F 6 HOH A 130 530 137 HOH HOH . F 6 HOH A 131 531 6 HOH HOH . F 6 HOH A 132 532 176 HOH HOH . F 6 HOH A 133 533 61 HOH HOH . F 6 HOH A 134 534 224 HOH HOH . F 6 HOH A 135 535 19 HOH HOH . F 6 HOH A 136 536 67 HOH HOH . F 6 HOH A 137 537 210 HOH HOH . F 6 HOH A 138 538 73 HOH HOH . F 6 HOH A 139 539 269 HOH HOH . F 6 HOH A 140 540 157 HOH HOH . F 6 HOH A 141 541 211 HOH HOH . F 6 HOH A 142 542 108 HOH HOH . F 6 HOH A 143 543 120 HOH HOH . F 6 HOH A 144 544 146 HOH HOH . F 6 HOH A 145 545 114 HOH HOH . F 6 HOH A 146 546 165 HOH HOH . F 6 HOH A 147 547 184 HOH HOH . F 6 HOH A 148 548 109 HOH HOH . F 6 HOH A 149 549 93 HOH HOH . F 6 HOH A 150 550 9 HOH HOH . F 6 HOH A 151 551 85 HOH HOH . F 6 HOH A 152 552 59 HOH HOH . F 6 HOH A 153 553 35 HOH HOH . F 6 HOH A 154 554 246 HOH HOH . F 6 HOH A 155 555 62 HOH HOH . F 6 HOH A 156 556 178 HOH HOH . F 6 HOH A 157 557 183 HOH HOH . F 6 HOH A 158 558 155 HOH HOH . F 6 HOH A 159 559 107 HOH HOH . F 6 HOH A 160 560 201 HOH HOH . F 6 HOH A 161 561 274 HOH HOH . F 6 HOH A 162 562 189 HOH HOH . F 6 HOH A 163 563 270 HOH HOH . F 6 HOH A 164 564 105 HOH HOH . F 6 HOH A 165 565 102 HOH HOH . F 6 HOH A 166 566 237 HOH HOH . F 6 HOH A 167 567 220 HOH HOH . F 6 HOH A 168 568 275 HOH HOH . F 6 HOH A 169 569 203 HOH HOH . F 6 HOH A 170 570 193 HOH HOH . F 6 HOH A 171 571 199 HOH HOH . F 6 HOH A 172 572 244 HOH HOH . F 6 HOH A 173 573 195 HOH HOH . F 6 HOH A 174 574 219 HOH HOH . F 6 HOH A 175 575 247 HOH HOH . F 6 HOH A 176 576 194 HOH HOH . F 6 HOH A 177 577 261 HOH HOH . F 6 HOH A 178 578 112 HOH HOH . F 6 HOH A 179 579 266 HOH HOH . F 6 HOH A 180 580 98 HOH HOH . F 6 HOH A 181 581 147 HOH HOH . F 6 HOH A 182 582 264 HOH HOH . F 6 HOH A 183 583 235 HOH HOH . F 6 HOH A 184 584 232 HOH HOH . F 6 HOH A 185 585 80 HOH HOH . F 6 HOH A 186 586 122 HOH HOH . F 6 HOH A 187 587 206 HOH HOH . F 6 HOH A 188 588 92 HOH HOH . F 6 HOH A 189 589 101 HOH HOH . F 6 HOH A 190 590 231 HOH HOH . F 6 HOH A 191 591 262 HOH HOH . F 6 HOH A 192 592 271 HOH HOH . F 6 HOH A 193 593 127 HOH HOH . F 6 HOH A 194 594 255 HOH HOH . F 6 HOH A 195 595 151 HOH HOH . F 6 HOH A 196 596 227 HOH HOH . F 6 HOH A 197 597 124 HOH HOH . F 6 HOH A 198 598 192 HOH HOH . F 6 HOH A 199 599 222 HOH HOH . F 6 HOH A 200 600 256 HOH HOH . F 6 HOH A 201 601 251 HOH HOH . F 6 HOH A 202 602 150 HOH HOH . F 6 HOH A 203 603 228 HOH HOH . F 6 HOH A 204 604 254 HOH HOH . F 6 HOH A 205 605 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 14.256 -21.81 18.681 1 12.04 ? N SAH 302 A 1 HETATM 2 C CA SAH . . . C 3 14.816 -22.43 19.864 1 11.12 ? CA SAH 302 A 1 HETATM 3 C CB SAH . . . C 3 15.854 -21.496 20.509 1 16.26 ? CB SAH 302 A 1 HETATM 4 C CG SAH . . . C 3 16.944 -21.431 19.476 1 24.72 ? CG SAH 302 A 1 HETATM 5 S SD SAH . . . C 3 18.596 -21.386 20.205 1 28.97 ? SD SAH 302 A 1 HETATM 6 C C SAH . . . C 3 13.741 -22.806 20.894 1 10.75 ? C SAH 302 A 1 HETATM 7 O O SAH . . . C 3 14.07 -23.592 21.837 1 10.15 ? O SAH 302 A 1 HETATM 8 O OXT SAH . . . C 3 12.546 -22.36 20.746 1 10.69 -1 OXT SAH 302 A 1 HETATM 9 C C5' SAH . . . C 3 19.757 -21.569 18.8 1 12.86 ? C5' SAH 302 A 1 HETATM 10 C C4' SAH . . . C 3 20.364 -22.948 18.735 1 10.44 ? C4' SAH 302 A 1 HETATM 11 O O4' SAH . . . C 3 21.206 -22.988 17.576 1 12.66 ? O4' SAH 302 A 1 HETATM 12 C C3' SAH . . . C 3 21.294 -23.15 19.957 1 14 ? C3' SAH 302 A 1 HETATM 13 O O3' SAH . . . C 3 20.895 -24.278 20.756 1 13.66 ? O3' SAH 302 A 1 HETATM 14 C C2' SAH . . . C 3 22.693 -23.388 19.357 1 11.19 ? C2' SAH 302 A 1 HETATM 15 O O2' SAH . . . C 3 23.362 -24.465 20.026 1 13.93 ? O2' SAH 302 A 1 HETATM 16 C C1' SAH . . . C 3 22.273 -23.824 17.949 1 13.3 ? C1' SAH 302 A 1 HETATM 17 N N9 SAH . . . C 3 23.328 -23.554 16.982 1 11.2 ? N9 SAH 302 A 1 HETATM 18 C C8 SAH . . . C 3 24.19 -22.508 16.967 1 20 ? C8 SAH 302 A 1 HETATM 19 N N7 SAH . . . C 3 25.001 -22.653 15.902 1 16.6 ? N7 SAH 302 A 1 HETATM 20 C C5 SAH . . . C 3 24.65 -23.786 15.263 1 17.81 ? C5 SAH 302 A 1 HETATM 21 C C6 SAH . . . C 3 25.143 -24.407 14.134 1 21.85 ? C6 SAH 302 A 1 HETATM 22 N N6 SAH . . . C 3 26.166 -23.887 13.447 1 22.81 ? N6 SAH 302 A 1 HETATM 23 N N1 SAH . . . C 3 24.575 -25.545 13.709 1 14.44 ? N1 SAH 302 A 1 HETATM 24 C C2 SAH . . . C 3 23.557 -26.039 14.427 1 15.37 ? C2 SAH 302 A 1 HETATM 25 N N3 SAH . . . C 3 23.047 -25.491 15.511 1 10.28 ? N3 SAH 302 A 1 HETATM 26 C C4 SAH . . . C 3 23.609 -24.337 15.934 1 14.66 ? C4 SAH 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #