data_7V1F # _model_server_result.job_id eFZTDTGq-V9-U2p3NkS_eA _model_server_result.datetime_utc '2024-11-01 17:34:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7V1F # _exptl.entry_id 7V1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.75 _cell.angle_gamma 90 _cell.entry_id 7V1F _cell.length_a 34.797 _cell.length_b 88.059 _cell.length_c 42.664 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O1A _struct_conn.ptnr1_label_comp_id GTP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GTP _struct_conn.ptnr1_auth_seq_id 301 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id MN _struct_conn.ptnr2_label_comp_id MN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MN _struct_conn.ptnr2_auth_seq_id 305 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.414 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 142 n n PG O2G GTP sing 143 n n PG O3G GTP sing 144 n n PG O3B GTP sing 145 n n O2G HOG2 GTP sing 146 n n O3G HOG3 GTP sing 147 n n O3B PB GTP sing 148 n n PB O1B GTP doub 149 n n PB O2B GTP sing 150 n n PB O3A GTP sing 151 n n O2B HOB2 GTP sing 152 n n O3A PA GTP sing 153 n n PA O1A GTP doub 154 n n PA O2A GTP sing 155 n n PA O5' GTP sing 156 n n O2A HOA2 GTP sing 157 n n O5' C5' GTP sing 158 n n C5' C4' GTP sing 159 n n C5' H5' GTP sing 160 n n C5' "H5''" GTP sing 161 n n C4' O4' GTP sing 162 n n C4' C3' GTP sing 163 n n C4' H4' GTP sing 164 n n O4' C1' GTP sing 165 n n C3' O3' GTP sing 166 n n C3' C2' GTP sing 167 n n C3' H3' GTP sing 168 n n O3' HO3' GTP sing 169 n n C2' O2' GTP sing 170 n n C2' C1' GTP sing 171 n n C2' H2' GTP sing 172 n n O2' HO2' GTP sing 173 n n C1' N9 GTP sing 174 n n C1' H1' GTP sing 175 n n N9 C8 GTP sing 176 n y N9 C4 GTP sing 177 n y C8 N7 GTP doub 178 n y C8 H8 GTP sing 179 n n N7 C5 GTP sing 180 n y C5 C6 GTP sing 181 n n C5 C4 GTP doub 182 n y C6 O6 GTP doub 183 n n C6 N1 GTP sing 184 n n N1 C2 GTP sing 185 n n N1 HN1 GTP sing 186 n n C2 N2 GTP sing 187 n n C2 N3 GTP doub 188 n n N2 HN21 GTP sing 189 n n N2 HN22 GTP sing 190 n n N3 C4 GTP sing 191 n n # _atom_sites.entry_id 7V1F _atom_sites.fract_transf_matrix[1][1] 0.028738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 301 400 GTP GTP . C 3 GOL A 1 302 600 GOL GOL . D 3 GOL A 1 303 800 GOL GOL . E 4 SAM A 1 304 801 SAM SAM . F 5 MN A 1 305 1 MN MN . G 6 HOH A 1 401 41 HOH HOH . G 6 HOH A 2 402 86 HOH HOH . G 6 HOH A 3 403 31 HOH HOH . G 6 HOH A 4 404 47 HOH HOH . G 6 HOH A 5 405 111 HOH HOH . G 6 HOH A 6 406 58 HOH HOH . G 6 HOH A 7 407 128 HOH HOH . G 6 HOH A 8 408 5 HOH HOH . G 6 HOH A 9 409 29 HOH HOH . G 6 HOH A 10 410 53 HOH HOH . G 6 HOH A 11 411 88 HOH HOH . G 6 HOH A 12 412 80 HOH HOH . G 6 HOH A 13 413 76 HOH HOH . G 6 HOH A 14 414 25 HOH HOH . G 6 HOH A 15 415 140 HOH HOH . G 6 HOH A 16 416 109 HOH HOH . G 6 HOH A 17 417 43 HOH HOH . G 6 HOH A 18 418 4 HOH HOH . G 6 HOH A 19 419 3 HOH HOH . G 6 HOH A 20 420 122 HOH HOH . G 6 HOH A 21 421 50 HOH HOH . G 6 HOH A 22 422 114 HOH HOH . G 6 HOH A 23 423 39 HOH HOH . G 6 HOH A 24 424 51 HOH HOH . G 6 HOH A 25 425 21 HOH HOH . G 6 HOH A 26 426 12 HOH HOH . G 6 HOH A 27 427 2 HOH HOH . G 6 HOH A 28 428 133 HOH HOH . G 6 HOH A 29 429 52 HOH HOH . G 6 HOH A 30 430 8 HOH HOH . G 6 HOH A 31 431 44 HOH HOH . G 6 HOH A 32 432 113 HOH HOH . G 6 HOH A 33 433 49 HOH HOH . G 6 HOH A 34 434 33 HOH HOH . G 6 HOH A 35 435 71 HOH HOH . G 6 HOH A 36 436 148 HOH HOH . G 6 HOH A 37 437 40 HOH HOH . G 6 HOH A 38 438 7 HOH HOH . G 6 HOH A 39 439 117 HOH HOH . G 6 HOH A 40 440 85 HOH HOH . G 6 HOH A 41 441 34 HOH HOH . G 6 HOH A 42 442 96 HOH HOH . G 6 HOH A 43 443 37 HOH HOH . G 6 HOH A 44 444 97 HOH HOH . G 6 HOH A 45 445 82 HOH HOH . G 6 HOH A 46 446 61 HOH HOH . G 6 HOH A 47 447 65 HOH HOH . G 6 HOH A 48 448 27 HOH HOH . G 6 HOH A 49 449 83 HOH HOH . G 6 HOH A 50 450 78 HOH HOH . G 6 HOH A 51 451 6 HOH HOH . G 6 HOH A 52 452 22 HOH HOH . G 6 HOH A 53 453 104 HOH HOH . G 6 HOH A 54 454 81 HOH HOH . G 6 HOH A 55 455 48 HOH HOH . G 6 HOH A 56 456 54 HOH HOH . G 6 HOH A 57 457 141 HOH HOH . G 6 HOH A 58 458 66 HOH HOH . G 6 HOH A 59 459 105 HOH HOH . G 6 HOH A 60 460 14 HOH HOH . G 6 HOH A 61 461 30 HOH HOH . G 6 HOH A 62 462 36 HOH HOH . G 6 HOH A 63 463 129 HOH HOH . G 6 HOH A 64 464 20 HOH HOH . G 6 HOH A 65 465 46 HOH HOH . G 6 HOH A 66 466 55 HOH HOH . G 6 HOH A 67 467 89 HOH HOH . G 6 HOH A 68 468 138 HOH HOH . G 6 HOH A 69 469 32 HOH HOH . G 6 HOH A 70 470 134 HOH HOH . G 6 HOH A 71 471 142 HOH HOH . G 6 HOH A 72 472 57 HOH HOH . G 6 HOH A 73 473 74 HOH HOH . G 6 HOH A 74 474 17 HOH HOH . G 6 HOH A 75 475 136 HOH HOH . G 6 HOH A 76 476 13 HOH HOH . G 6 HOH A 77 477 60 HOH HOH . G 6 HOH A 78 478 56 HOH HOH . G 6 HOH A 79 479 132 HOH HOH . G 6 HOH A 80 480 101 HOH HOH . G 6 HOH A 81 481 123 HOH HOH . G 6 HOH A 82 482 131 HOH HOH . G 6 HOH A 83 483 108 HOH HOH . G 6 HOH A 84 484 62 HOH HOH . G 6 HOH A 85 485 67 HOH HOH . G 6 HOH A 86 486 35 HOH HOH . G 6 HOH A 87 487 127 HOH HOH . G 6 HOH A 88 488 150 HOH HOH . G 6 HOH A 89 489 64 HOH HOH . G 6 HOH A 90 490 72 HOH HOH . G 6 HOH A 91 491 137 HOH HOH . G 6 HOH A 92 492 9 HOH HOH . G 6 HOH A 93 493 151 HOH HOH . G 6 HOH A 94 494 106 HOH HOH . G 6 HOH A 95 495 149 HOH HOH . G 6 HOH A 96 496 93 HOH HOH . G 6 HOH A 97 497 146 HOH HOH . G 6 HOH A 98 498 147 HOH HOH . G 6 HOH A 99 499 145 HOH HOH . G 6 HOH A 100 500 103 HOH HOH . G 6 HOH A 101 501 144 HOH HOH . G 6 HOH A 102 502 77 HOH HOH . G 6 HOH A 103 503 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 -4.058 15.055 27.587 0.79 57.91 ? PG GTP 301 A 1 HETATM 2 O O1G GTP . . . B 2 -3.117 16.163 27.222 0.79 41.1 -1 O1G GTP 301 A 1 HETATM 3 O O2G GTP . . . B 2 -5.385 15.337 26.981 0.79 55.99 -1 O2G GTP 301 A 1 HETATM 4 O O3G GTP . . . B 2 -4.193 15.018 29.066 0.79 50.93 ? O3G GTP 301 A 1 HETATM 5 O O3B GTP . . . B 2 -3.437 13.609 27.02 0.79 46.21 ? O3B GTP 301 A 1 HETATM 6 P PB GTP . . . B 2 -3.863 12.048 27.308 0.79 47.04 ? PB GTP 301 A 1 HETATM 7 O O1B GTP . . . B 2 -2.682 11.066 27.128 0.79 40.46 -1 O1B GTP 301 A 1 HETATM 8 O O2B GTP . . . B 2 -4.398 11.957 28.745 0.79 58.93 ? O2B GTP 301 A 1 HETATM 9 O O3A GTP . . . B 2 -5.065 11.576 26.264 0.79 42.13 ? O3A GTP 301 A 1 HETATM 10 P PA GTP . . . B 2 -6.407 12.396 25.777 0.79 42.95 ? PA GTP 301 A 1 HETATM 11 O O1A GTP . . . B 2 -6.966 13.199 26.941 0.79 47.7 -1 O1A GTP 301 A 1 HETATM 12 O O2A GTP . . . B 2 -6.007 13.321 24.648 0.79 43.87 ? O2A GTP 301 A 1 HETATM 13 O O5' GTP . . . B 2 -7.46 11.257 25.257 0.79 41.49 ? O5' GTP 301 A 1 HETATM 14 C C5' GTP . . . B 2 -6.858 10.02 24.893 0.79 41.48 ? C5' GTP 301 A 1 HETATM 15 C C4' GTP . . . B 2 -7.977 8.962 24.706 0.79 33.99 ? C4' GTP 301 A 1 HETATM 16 O O4' GTP . . . B 2 -7.907 8.025 25.815 0.79 36.75 ? O4' GTP 301 A 1 HETATM 17 C C3' GTP . . . B 2 -9.434 9.425 24.587 0.79 23.31 ? C3' GTP 301 A 1 HETATM 18 O O3' GTP . . . B 2 -9.803 9.55 23.221 0.79 27.38 ? O3' GTP 301 A 1 HETATM 19 C C2' GTP . . . B 2 -10.189 8.238 25.157 0.79 26 ? C2' GTP 301 A 1 HETATM 20 O O2' GTP . . . B 2 -10.328 7.269 24.115 0.79 22.81 ? O2' GTP 301 A 1 HETATM 21 C C1' GTP . . . B 2 -9.222 7.701 26.211 0.79 37.11 ? C1' GTP 301 A 1 HETATM 22 N N9 GTP . . . B 2 -9.448 8.225 27.451 0.79 43.62 ? N9 GTP 301 A 1 HETATM 23 C C8 GTP . . . B 2 -9.362 9.495 27.85 0.79 41.58 ? C8 GTP 301 A 1 HETATM 24 N N7 GTP . . . B 2 -9.661 9.574 29.163 0.79 31.55 ? N7 GTP 301 A 1 HETATM 25 C C5 GTP . . . B 2 -9.938 8.33 29.586 0.79 33.44 ? C5 GTP 301 A 1 HETATM 26 C C6 GTP . . . B 2 -10.302 7.766 30.802 0.79 33.85 ? C6 GTP 301 A 1 HETATM 27 O O6 GTP . . . B 2 -10.43 8.526 31.771 0.79 39.28 ? O6 GTP 301 A 1 HETATM 28 N N1 GTP . . . B 2 -10.512 6.458 30.93 0.79 34.3 ? N1 GTP 301 A 1 HETATM 29 C C2 GTP . . . B 2 -10.352 5.719 29.829 0.79 34.79 ? C2 GTP 301 A 1 HETATM 30 N N2 GTP . . . B 2 -10.551 4.412 29.942 0.79 27.63 ? N2 GTP 301 A 1 HETATM 31 N N3 GTP . . . B 2 -10.003 6.137 28.616 0.79 33.1 ? N3 GTP 301 A 1 HETATM 32 C C4 GTP . . . B 2 -9.796 7.466 28.497 0.79 33.62 ? C4 GTP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #