data_7V1F # _model_server_result.job_id k37KLMEGzYbFQnS1w9Ne1g _model_server_result.datetime_utc '2024-11-01 17:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7V1F # _exptl.entry_id 7V1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.75 _cell.angle_gamma 90 _cell.entry_id 7V1F _cell.length_a 34.797 _cell.length_b 88.059 _cell.length_c 42.664 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O1A _struct_conn.ptnr1_label_comp_id GTP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GTP _struct_conn.ptnr1_auth_seq_id 301 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id MN _struct_conn.ptnr2_label_comp_id MN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MN _struct_conn.ptnr2_auth_seq_id 305 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.414 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 340 n n N HN1 SAM sing 341 n n N HN2 SAM sing 342 n n CA C SAM sing 343 n n CA CB SAM sing 344 n n CA HA SAM sing 345 n n C O SAM doub 346 n n C OXT SAM sing 347 n n CB CG SAM sing 348 n n CB HB1 SAM sing 349 n n CB HB2 SAM sing 350 n n CG SD SAM sing 351 n n CG HG1 SAM sing 352 n n CG HG2 SAM sing 353 n n SD CE SAM sing 354 n n SD C5' SAM sing 355 n n CE HE1 SAM sing 356 n n CE HE2 SAM sing 357 n n CE HE3 SAM sing 358 n n C5' C4' SAM sing 359 n n C5' "H5'1" SAM sing 360 n n C5' "H5'2" SAM sing 361 n n C4' O4' SAM sing 362 n n C4' C3' SAM sing 363 n n C4' H4' SAM sing 364 n n O4' C1' SAM sing 365 n n C3' O3' SAM sing 366 n n C3' C2' SAM sing 367 n n C3' H3' SAM sing 368 n n O3' HO3' SAM sing 369 n n C2' O2' SAM sing 370 n n C2' C1' SAM sing 371 n n C2' H2' SAM sing 372 n n O2' HO2' SAM sing 373 n n C1' N9 SAM sing 374 n n C1' H1' SAM sing 375 n n N9 C8 SAM sing 376 n y N9 C4 SAM sing 377 n y C8 N7 SAM doub 378 n y C8 H8 SAM sing 379 n n N7 C5 SAM sing 380 n y C5 C6 SAM sing 381 n y C5 C4 SAM doub 382 n y C6 N6 SAM sing 383 n n C6 N1 SAM doub 384 n y N6 HN61 SAM sing 385 n n N6 HN62 SAM sing 386 n n N1 C2 SAM sing 387 n y C2 N3 SAM doub 388 n y C2 H2 SAM sing 389 n n N3 C4 SAM sing 390 n y # _atom_sites.entry_id 7V1F _atom_sites.fract_transf_matrix[1][1] 0.028738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 301 400 GTP GTP . C 3 GOL A 1 302 600 GOL GOL . D 3 GOL A 1 303 800 GOL GOL . E 4 SAM A 1 304 801 SAM SAM . F 5 MN A 1 305 1 MN MN . G 6 HOH A 1 401 41 HOH HOH . G 6 HOH A 2 402 86 HOH HOH . G 6 HOH A 3 403 31 HOH HOH . G 6 HOH A 4 404 47 HOH HOH . G 6 HOH A 5 405 111 HOH HOH . G 6 HOH A 6 406 58 HOH HOH . G 6 HOH A 7 407 128 HOH HOH . G 6 HOH A 8 408 5 HOH HOH . G 6 HOH A 9 409 29 HOH HOH . G 6 HOH A 10 410 53 HOH HOH . G 6 HOH A 11 411 88 HOH HOH . G 6 HOH A 12 412 80 HOH HOH . G 6 HOH A 13 413 76 HOH HOH . G 6 HOH A 14 414 25 HOH HOH . G 6 HOH A 15 415 140 HOH HOH . G 6 HOH A 16 416 109 HOH HOH . G 6 HOH A 17 417 43 HOH HOH . G 6 HOH A 18 418 4 HOH HOH . G 6 HOH A 19 419 3 HOH HOH . G 6 HOH A 20 420 122 HOH HOH . G 6 HOH A 21 421 50 HOH HOH . G 6 HOH A 22 422 114 HOH HOH . G 6 HOH A 23 423 39 HOH HOH . G 6 HOH A 24 424 51 HOH HOH . G 6 HOH A 25 425 21 HOH HOH . G 6 HOH A 26 426 12 HOH HOH . G 6 HOH A 27 427 2 HOH HOH . G 6 HOH A 28 428 133 HOH HOH . G 6 HOH A 29 429 52 HOH HOH . G 6 HOH A 30 430 8 HOH HOH . G 6 HOH A 31 431 44 HOH HOH . G 6 HOH A 32 432 113 HOH HOH . G 6 HOH A 33 433 49 HOH HOH . G 6 HOH A 34 434 33 HOH HOH . G 6 HOH A 35 435 71 HOH HOH . G 6 HOH A 36 436 148 HOH HOH . G 6 HOH A 37 437 40 HOH HOH . G 6 HOH A 38 438 7 HOH HOH . G 6 HOH A 39 439 117 HOH HOH . G 6 HOH A 40 440 85 HOH HOH . G 6 HOH A 41 441 34 HOH HOH . G 6 HOH A 42 442 96 HOH HOH . G 6 HOH A 43 443 37 HOH HOH . G 6 HOH A 44 444 97 HOH HOH . G 6 HOH A 45 445 82 HOH HOH . G 6 HOH A 46 446 61 HOH HOH . G 6 HOH A 47 447 65 HOH HOH . G 6 HOH A 48 448 27 HOH HOH . G 6 HOH A 49 449 83 HOH HOH . G 6 HOH A 50 450 78 HOH HOH . G 6 HOH A 51 451 6 HOH HOH . G 6 HOH A 52 452 22 HOH HOH . G 6 HOH A 53 453 104 HOH HOH . G 6 HOH A 54 454 81 HOH HOH . G 6 HOH A 55 455 48 HOH HOH . G 6 HOH A 56 456 54 HOH HOH . G 6 HOH A 57 457 141 HOH HOH . G 6 HOH A 58 458 66 HOH HOH . G 6 HOH A 59 459 105 HOH HOH . G 6 HOH A 60 460 14 HOH HOH . G 6 HOH A 61 461 30 HOH HOH . G 6 HOH A 62 462 36 HOH HOH . G 6 HOH A 63 463 129 HOH HOH . G 6 HOH A 64 464 20 HOH HOH . G 6 HOH A 65 465 46 HOH HOH . G 6 HOH A 66 466 55 HOH HOH . G 6 HOH A 67 467 89 HOH HOH . G 6 HOH A 68 468 138 HOH HOH . G 6 HOH A 69 469 32 HOH HOH . G 6 HOH A 70 470 134 HOH HOH . G 6 HOH A 71 471 142 HOH HOH . G 6 HOH A 72 472 57 HOH HOH . G 6 HOH A 73 473 74 HOH HOH . G 6 HOH A 74 474 17 HOH HOH . G 6 HOH A 75 475 136 HOH HOH . G 6 HOH A 76 476 13 HOH HOH . G 6 HOH A 77 477 60 HOH HOH . G 6 HOH A 78 478 56 HOH HOH . G 6 HOH A 79 479 132 HOH HOH . G 6 HOH A 80 480 101 HOH HOH . G 6 HOH A 81 481 123 HOH HOH . G 6 HOH A 82 482 131 HOH HOH . G 6 HOH A 83 483 108 HOH HOH . G 6 HOH A 84 484 62 HOH HOH . G 6 HOH A 85 485 67 HOH HOH . G 6 HOH A 86 486 35 HOH HOH . G 6 HOH A 87 487 127 HOH HOH . G 6 HOH A 88 488 150 HOH HOH . G 6 HOH A 89 489 64 HOH HOH . G 6 HOH A 90 490 72 HOH HOH . G 6 HOH A 91 491 137 HOH HOH . G 6 HOH A 92 492 9 HOH HOH . G 6 HOH A 93 493 151 HOH HOH . G 6 HOH A 94 494 106 HOH HOH . G 6 HOH A 95 495 149 HOH HOH . G 6 HOH A 96 496 93 HOH HOH . G 6 HOH A 97 497 146 HOH HOH . G 6 HOH A 98 498 147 HOH HOH . G 6 HOH A 99 499 145 HOH HOH . G 6 HOH A 100 500 103 HOH HOH . G 6 HOH A 101 501 144 HOH HOH . G 6 HOH A 102 502 77 HOH HOH . G 6 HOH A 103 503 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . E 4 2.533 21.388 16.779 1 20.53 ? N SAM 304 A 1 HETATM 2 C CA SAM . . . E 4 2.082 22.296 17.848 1 27.72 ? CA SAM 304 A 1 HETATM 3 C C SAM . . . E 4 3.153 22.48 18.922 1 23.49 ? C SAM 304 A 1 HETATM 4 O O SAM . . . E 4 4.24 21.959 18.736 1 21.81 ? O SAM 304 A 1 HETATM 5 O OXT SAM . . . E 4 2.884 23.128 19.95 1 25.84 ? OXT SAM 304 A 1 HETATM 6 C CB SAM . . . E 4 0.878 21.77 18.609 1 25.08 ? CB SAM 304 A 1 HETATM 7 C CG SAM . . . E 4 -0.277 21.466 17.672 1 32.25 ? CG SAM 304 A 1 HETATM 8 S SD SAM . . . E 4 -1.788 21.088 18.586 1 40.4 ? SD SAM 304 A 1 HETATM 9 C CE SAM . . . E 4 -1.813 19.276 18.614 1 38.11 ? CE SAM 304 A 1 HETATM 10 C C5' SAM . . . E 4 -2.979 21.368 17.246 1 36.1 ? C5' SAM 304 A 1 HETATM 11 C C4' SAM . . . E 4 -3.623 22.749 17.27 1 24.63 ? C4' SAM 304 A 1 HETATM 12 O O4' SAM . . . E 4 -4.479 22.93 16.167 1 26.88 ? O4' SAM 304 A 1 HETATM 13 C C3' SAM . . . E 4 -4.489 22.981 18.495 1 32.13 ? C3' SAM 304 A 1 HETATM 14 O O3' SAM . . . E 4 -4.016 24.074 19.255 1 27.94 ? O3' SAM 304 A 1 HETATM 15 C C2' SAM . . . E 4 -5.882 23.331 18.003 1 23.07 ? C2' SAM 304 A 1 HETATM 16 O O2' SAM . . . E 4 -6.425 24.389 18.754 1 31.4 ? O2' SAM 304 A 1 HETATM 17 C C1' SAM . . . E 4 -5.563 23.738 16.557 1 22.84 ? C1' SAM 304 A 1 HETATM 18 N N9 SAM . . . E 4 -6.665 23.481 15.623 1 25.44 ? N9 SAM 304 A 1 HETATM 19 C C8 SAM . . . E 4 -7.569 22.443 15.556 1 30.04 ? C8 SAM 304 A 1 HETATM 20 N N7 SAM . . . E 4 -8.402 22.676 14.495 1 26.45 ? N7 SAM 304 A 1 HETATM 21 C C5 SAM . . . E 4 -8.015 23.836 13.897 1 24.68 ? C5 SAM 304 A 1 HETATM 22 C C6 SAM . . . E 4 -8.484 24.555 12.807 1 29.72 ? C6 SAM 304 A 1 HETATM 23 N N6 SAM . . . E 4 -9.537 24.163 12.064 1 25.83 ? N6 SAM 304 A 1 HETATM 24 N N1 SAM . . . E 4 -7.817 25.717 12.485 1 29.28 ? N1 SAM 304 A 1 HETATM 25 C C2 SAM . . . E 4 -6.731 26.19 13.182 1 23.26 ? C2 SAM 304 A 1 HETATM 26 N N3 SAM . . . E 4 -6.299 25.468 14.254 1 24.03 ? N3 SAM 304 A 1 HETATM 27 C C4 SAM . . . E 4 -6.918 24.323 14.592 1 27.27 ? C4 SAM 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #