data_7V1I # _model_server_result.job_id zFHrLNuy7WwcAlc758hQIg _model_server_result.datetime_utc '2025-03-04 16:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7V1I # _exptl.entry_id 7V1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.255 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.25 _cell.angle_gamma 90 _cell.entry_id 7V1I _cell.length_a 35.232 _cell.length_b 89.977 _cell.length_c 45.686 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH1 ARG 23 A ARG 28 1_555 C P G7M . A G7M 302 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.707 ? metalc ? metalc1 C OP2 G7M . A G7M 302 1_555 F MG MG . A MG 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc2 D O2A MGP . A MGP 303 1_555 F MG MG . A MG 305 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc3 D O2A MGP . A MGP 303 1_555 F MG MG . A MG 305 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 F MG MG . A MG 305 1_555 G O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? # _chem_comp.formula 'C11 H17 N5 O8 P 1' _chem_comp.formula_weight 378.255 _chem_comp.id G7M _chem_comp.mon_nstd_flag n _chem_comp.name "N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP3 P G7M sing 83 n n OP3 HOP3 G7M sing 84 n n P OP1 G7M doub 85 n n P OP2 G7M sing 86 n n P O5' G7M sing 87 n n OP2 HOP2 G7M sing 88 n n O5' C5' G7M sing 89 n n C5' C4' G7M sing 90 n n C5' H5' G7M sing 91 n n C5' "H5''" G7M sing 92 n n C4' O4' G7M sing 93 n n C4' C3' G7M sing 94 n n C4' H4' G7M sing 95 n n O4' C1' G7M sing 96 n n C3' O3' G7M sing 97 n n C3' C2' G7M sing 98 n n C3' H3' G7M sing 99 n n O3' HO3' G7M sing 100 n n C2' O2' G7M sing 101 n n C2' C1' G7M sing 102 n n C2' H2' G7M sing 103 n n O2' HO2' G7M sing 104 n n C1' N9 G7M sing 105 n n C1' H1' G7M sing 106 n n N9 C8 G7M sing 107 n y N9 C4 G7M sing 108 n y C8 N7 G7M doub 109 n y C8 H8 G7M sing 110 n n N7 CN7 G7M sing 111 n n N7 C5 G7M sing 112 n y CN7 HN71 G7M sing 113 n n CN7 HN72 G7M sing 114 n n CN7 HN73 G7M sing 115 n n C5 C6 G7M sing 116 n n C5 C4 G7M doub 117 n y C6 O6 G7M doub 118 n n C6 N1 G7M sing 119 n n N1 C2 G7M sing 120 n n N1 H1 G7M sing 121 n n C2 N2 G7M sing 122 n n C2 N3 G7M doub 123 n n N2 H21 G7M sing 124 n n N2 H22 G7M sing 125 n n N3 C4 G7M sing 126 n n # _atom_sites.entry_id 7V1I _atom_sites.fract_transf_matrix[1][1] 0.028383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 600 GOL GOL . C 3 G7M A 1 302 701 G7M G7M . D 4 MGP A 1 303 701 MGP MGP . E 5 SAH A 1 304 702 SAH SAH . F 6 MG A 1 305 1 MG MG . G 7 HOH A 1 401 47 HOH HOH . G 7 HOH A 2 402 67 HOH HOH . G 7 HOH A 3 403 11 HOH HOH . G 7 HOH A 4 404 17 HOH HOH . G 7 HOH A 5 405 5 HOH HOH . G 7 HOH A 6 406 54 HOH HOH . G 7 HOH A 7 407 8 HOH HOH . G 7 HOH A 8 408 34 HOH HOH . G 7 HOH A 9 409 15 HOH HOH . G 7 HOH A 10 410 20 HOH HOH . G 7 HOH A 11 411 49 HOH HOH . G 7 HOH A 12 412 27 HOH HOH . G 7 HOH A 13 413 7 HOH HOH . G 7 HOH A 14 414 89 HOH HOH . G 7 HOH A 15 415 12 HOH HOH . G 7 HOH A 16 416 40 HOH HOH . G 7 HOH A 17 417 82 HOH HOH . G 7 HOH A 18 418 26 HOH HOH . G 7 HOH A 19 419 46 HOH HOH . G 7 HOH A 20 420 4 HOH HOH . G 7 HOH A 21 421 103 HOH HOH . G 7 HOH A 22 422 3 HOH HOH . G 7 HOH A 23 423 108 HOH HOH . G 7 HOH A 24 424 78 HOH HOH . G 7 HOH A 25 425 6 HOH HOH . G 7 HOH A 26 426 111 HOH HOH . G 7 HOH A 27 427 58 HOH HOH . G 7 HOH A 28 428 112 HOH HOH . G 7 HOH A 29 429 33 HOH HOH . G 7 HOH A 30 430 106 HOH HOH . G 7 HOH A 31 431 91 HOH HOH . G 7 HOH A 32 432 9 HOH HOH . G 7 HOH A 33 433 84 HOH HOH . G 7 HOH A 34 434 99 HOH HOH . G 7 HOH A 35 435 37 HOH HOH . G 7 HOH A 36 436 88 HOH HOH . G 7 HOH A 37 437 55 HOH HOH . G 7 HOH A 38 438 94 HOH HOH . G 7 HOH A 39 439 97 HOH HOH . G 7 HOH A 40 440 10 HOH HOH . G 7 HOH A 41 441 48 HOH HOH . G 7 HOH A 42 442 41 HOH HOH . G 7 HOH A 43 443 35 HOH HOH . G 7 HOH A 44 444 56 HOH HOH . G 7 HOH A 45 445 73 HOH HOH . G 7 HOH A 46 446 25 HOH HOH . G 7 HOH A 47 447 31 HOH HOH . G 7 HOH A 48 448 43 HOH HOH . G 7 HOH A 49 449 22 HOH HOH . G 7 HOH A 50 450 18 HOH HOH . G 7 HOH A 51 451 16 HOH HOH . G 7 HOH A 52 452 76 HOH HOH . G 7 HOH A 53 453 38 HOH HOH . G 7 HOH A 54 454 45 HOH HOH . G 7 HOH A 55 455 57 HOH HOH . G 7 HOH A 56 456 75 HOH HOH . G 7 HOH A 57 457 100 HOH HOH . G 7 HOH A 58 458 77 HOH HOH . G 7 HOH A 59 459 101 HOH HOH . G 7 HOH A 60 460 93 HOH HOH . G 7 HOH A 61 461 85 HOH HOH . G 7 HOH A 62 462 86 HOH HOH . G 7 HOH A 63 463 21 HOH HOH . G 7 HOH A 64 464 87 HOH HOH . G 7 HOH A 65 465 107 HOH HOH . G 7 HOH A 66 466 53 HOH HOH . G 7 HOH A 67 467 68 HOH HOH . G 7 HOH A 68 468 98 HOH HOH . G 7 HOH A 69 469 51 HOH HOH . G 7 HOH A 70 470 102 HOH HOH . G 7 HOH A 71 471 32 HOH HOH . G 7 HOH A 72 472 74 HOH HOH . G 7 HOH A 73 473 39 HOH HOH . G 7 HOH A 74 474 24 HOH HOH . G 7 HOH A 75 475 65 HOH HOH . G 7 HOH A 76 476 50 HOH HOH . G 7 HOH A 77 477 105 HOH HOH . G 7 HOH A 78 478 96 HOH HOH . G 7 HOH A 79 479 90 HOH HOH . G 7 HOH A 80 480 72 HOH HOH . G 7 HOH A 81 481 104 HOH HOH . G 7 HOH A 82 482 81 HOH HOH . G 7 HOH A 83 483 110 HOH HOH . G 7 HOH A 84 484 64 HOH HOH . G 7 HOH A 85 485 71 HOH HOH . G 7 HOH A 86 486 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P G7M . A . C 3 22.572 -12.077 28.589 0.21 47.62 ? P G7M 302 A 1 HETATM 2 O OP1 G7M . A . C 3 22.117 -13.162 27.685 0.21 50.3 -1 OP1 G7M 302 A 1 HETATM 3 O OP2 G7M . A . C 3 23.293 -12.718 29.762 0.21 48.01 ? OP2 G7M 302 A 1 HETATM 4 O O5' G7M . A . C 3 23.649 -11.078 27.851 0.21 41.53 ? O5' G7M 302 A 1 HETATM 5 C C5' G7M . A . C 3 23.342 -10.463 26.564 0.21 40.06 ? C5' G7M 302 A 1 HETATM 6 C C4' G7M . A . C 3 24.225 -9.238 26.56 0.21 37.59 ? C4' G7M 302 A 1 HETATM 7 O O4' G7M . A . C 3 24.069 -8.578 27.849 0.21 36.27 ? O4' G7M 302 A 1 HETATM 8 C C3' G7M . A . C 3 25.746 -9.596 26.641 0.21 35.18 ? C3' G7M 302 A 1 HETATM 9 O O3' G7M . A . C 3 26.293 -9.846 25.325 0.21 31.43 ? O3' G7M 302 A 1 HETATM 10 C C2' G7M . A . C 3 26.364 -8.349 27.252 0.21 34.84 ? C2' G7M 302 A 1 HETATM 11 O O2' G7M . A . C 3 26.434 -7.295 26.276 0.21 30.67 ? O2' G7M 302 A 1 HETATM 12 C C1' G7M . A . C 3 25.267 -7.936 28.246 0.21 35.58 ? C1' G7M 302 A 1 HETATM 13 N N9 G7M . A . C 3 25.574 -8.366 29.591 0.21 36.99 ? N9 G7M 302 A 1 HETATM 14 C C8 G7M . A . C 3 25.528 -9.597 30.072 0.21 38.92 ? C8 G7M 302 A 1 HETATM 15 N N7 G7M . A . C 3 25.852 -9.6 31.36 0.21 39.39 ? N7 G7M 302 A 1 HETATM 16 C CN7 G7M . A . C 3 25.915 -10.799 32.186 0.21 36.97 ? CN7 G7M 302 A 1 HETATM 17 C C5 G7M . A . C 3 26.104 -8.357 31.725 0.21 36.79 ? C5 G7M 302 A 1 HETATM 18 C C6 G7M . A . C 3 26.475 -7.754 32.906 0.21 39.24 ? C6 G7M 302 A 1 HETATM 19 O O6 G7M . A . C 3 26.654 -8.434 33.949 0.21 39.29 ? O6 G7M 302 A 1 HETATM 20 N N1 G7M . A . C 3 26.665 -6.478 33.027 0.21 37.59 ? N1 G7M 302 A 1 HETATM 21 C C2 G7M . A . C 3 26.464 -5.769 31.885 0.21 37.11 ? C2 G7M 302 A 1 HETATM 22 N N2 G7M . A . C 3 26.65 -4.454 31.957 0.21 38.32 ? N2 G7M 302 A 1 HETATM 23 N N3 G7M . A . C 3 26.1 -6.24 30.668 0.21 37.98 ? N3 G7M 302 A 1 HETATM 24 C C4 G7M . A . C 3 25.919 -7.588 30.598 0.21 37.51 ? C4 G7M 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 597 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #