data_7V1I # _model_server_result.job_id qQXX_IuIh2OO3mBYm8bcMQ _model_server_result.datetime_utc '2024-11-18 11:42:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7V1I # _exptl.entry_id 7V1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.215 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.25 _cell.angle_gamma 90 _cell.entry_id 7V1I _cell.length_a 35.232 _cell.length_b 89.977 _cell.length_c 45.686 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH1 ARG 23 A ARG 28 1_555 C P G7M . A G7M 302 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.707 ? metalc ? metalc1 C OP2 G7M . A G7M 302 1_555 F MG MG . A MG 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc2 D O2A MGP . A MGP 303 1_555 F MG MG . A MG 305 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc3 D O2A MGP . A MGP 303 1_555 F MG MG . A MG 305 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 F MG MG . A MG 305 1_555 G O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? # _chem_comp.formula 'C11 H19 N5 O14 P3 1' _chem_comp.formula_weight 538.215 _chem_comp.id MGP _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A MGP sing 294 n n PA O2A MGP doub 295 n n PA O3A MGP sing 296 n n PA O5' MGP sing 297 n n O3A PB MGP sing 298 n n O5' C5' MGP sing 299 n n PB O1B MGP sing 300 n n PB O2B MGP doub 301 n n PB O3B MGP sing 302 n n O3B PC MGP sing 303 n n PC O1C MGP sing 304 n n PC O2C MGP doub 305 n n PC O3C MGP sing 306 n n C5' C4' MGP sing 307 n n C5' H5' MGP sing 308 n n C5' "H5'A" MGP sing 309 n n C4' O4' MGP sing 310 n n C4' C3' MGP sing 311 n n C4' H4' MGP sing 312 n n O4' C1' MGP sing 313 n n C3' O3' MGP sing 314 n n C3' C2' MGP sing 315 n n C3' H3' MGP sing 316 n n O3' HO3' MGP sing 317 n n C2' O2' MGP sing 318 n n C2' C1' MGP sing 319 n n C2' H2' MGP sing 320 n n O2' HO2' MGP sing 321 n n C1' N9 MGP sing 322 n n C1' H1' MGP sing 323 n n N9 C8 MGP sing 324 n y N9 C4 MGP sing 325 n y C8 N7 MGP doub 326 n y C8 H8 MGP sing 327 n n N7 CM7 MGP sing 328 n n N7 C5 MGP sing 329 n y CM7 HM7 MGP sing 330 n n CM7 HM7A MGP sing 331 n n CM7 HM7B MGP sing 332 n n C5 C6 MGP sing 333 n n C5 C4 MGP doub 334 n y C6 O6 MGP doub 335 n n C6 N1 MGP sing 336 n n N1 C2 MGP sing 337 n n N1 HN1 MGP sing 338 n n C2 N2 MGP sing 339 n n C2 N3 MGP doub 340 n n N2 HN2 MGP sing 341 n n N2 HN2A MGP sing 342 n n N3 C4 MGP sing 343 n n O1A H16 MGP sing 344 n n O1B H17 MGP sing 345 n n O1C H18 MGP sing 346 n n O3C H19 MGP sing 347 n n # _atom_sites.entry_id 7V1I _atom_sites.fract_transf_matrix[1][1] 0.028383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 600 GOL GOL . C 3 G7M A 1 302 701 G7M G7M . D 4 MGP A 1 303 701 MGP MGP . E 5 SAH A 1 304 702 SAH SAH . F 6 MG A 1 305 1 MG MG . G 7 HOH A 1 401 47 HOH HOH . G 7 HOH A 2 402 67 HOH HOH . G 7 HOH A 3 403 11 HOH HOH . G 7 HOH A 4 404 17 HOH HOH . G 7 HOH A 5 405 5 HOH HOH . G 7 HOH A 6 406 54 HOH HOH . G 7 HOH A 7 407 8 HOH HOH . G 7 HOH A 8 408 34 HOH HOH . G 7 HOH A 9 409 15 HOH HOH . G 7 HOH A 10 410 20 HOH HOH . G 7 HOH A 11 411 49 HOH HOH . G 7 HOH A 12 412 27 HOH HOH . G 7 HOH A 13 413 7 HOH HOH . G 7 HOH A 14 414 89 HOH HOH . G 7 HOH A 15 415 12 HOH HOH . G 7 HOH A 16 416 40 HOH HOH . G 7 HOH A 17 417 82 HOH HOH . G 7 HOH A 18 418 26 HOH HOH . G 7 HOH A 19 419 46 HOH HOH . G 7 HOH A 20 420 4 HOH HOH . G 7 HOH A 21 421 103 HOH HOH . G 7 HOH A 22 422 3 HOH HOH . G 7 HOH A 23 423 108 HOH HOH . G 7 HOH A 24 424 78 HOH HOH . G 7 HOH A 25 425 6 HOH HOH . G 7 HOH A 26 426 111 HOH HOH . G 7 HOH A 27 427 58 HOH HOH . G 7 HOH A 28 428 112 HOH HOH . G 7 HOH A 29 429 33 HOH HOH . G 7 HOH A 30 430 106 HOH HOH . G 7 HOH A 31 431 91 HOH HOH . G 7 HOH A 32 432 9 HOH HOH . G 7 HOH A 33 433 84 HOH HOH . G 7 HOH A 34 434 99 HOH HOH . G 7 HOH A 35 435 37 HOH HOH . G 7 HOH A 36 436 88 HOH HOH . G 7 HOH A 37 437 55 HOH HOH . G 7 HOH A 38 438 94 HOH HOH . G 7 HOH A 39 439 97 HOH HOH . G 7 HOH A 40 440 10 HOH HOH . G 7 HOH A 41 441 48 HOH HOH . G 7 HOH A 42 442 41 HOH HOH . G 7 HOH A 43 443 35 HOH HOH . G 7 HOH A 44 444 56 HOH HOH . G 7 HOH A 45 445 73 HOH HOH . G 7 HOH A 46 446 25 HOH HOH . G 7 HOH A 47 447 31 HOH HOH . G 7 HOH A 48 448 43 HOH HOH . G 7 HOH A 49 449 22 HOH HOH . G 7 HOH A 50 450 18 HOH HOH . G 7 HOH A 51 451 16 HOH HOH . G 7 HOH A 52 452 76 HOH HOH . G 7 HOH A 53 453 38 HOH HOH . G 7 HOH A 54 454 45 HOH HOH . G 7 HOH A 55 455 57 HOH HOH . G 7 HOH A 56 456 75 HOH HOH . G 7 HOH A 57 457 100 HOH HOH . G 7 HOH A 58 458 77 HOH HOH . G 7 HOH A 59 459 101 HOH HOH . G 7 HOH A 60 460 93 HOH HOH . G 7 HOH A 61 461 85 HOH HOH . G 7 HOH A 62 462 86 HOH HOH . G 7 HOH A 63 463 21 HOH HOH . G 7 HOH A 64 464 87 HOH HOH . G 7 HOH A 65 465 107 HOH HOH . G 7 HOH A 66 466 53 HOH HOH . G 7 HOH A 67 467 68 HOH HOH . G 7 HOH A 68 468 98 HOH HOH . G 7 HOH A 69 469 51 HOH HOH . G 7 HOH A 70 470 102 HOH HOH . G 7 HOH A 71 471 32 HOH HOH . G 7 HOH A 72 472 74 HOH HOH . G 7 HOH A 73 473 39 HOH HOH . G 7 HOH A 74 474 24 HOH HOH . G 7 HOH A 75 475 65 HOH HOH . G 7 HOH A 76 476 50 HOH HOH . G 7 HOH A 77 477 105 HOH HOH . G 7 HOH A 78 478 96 HOH HOH . G 7 HOH A 79 479 90 HOH HOH . G 7 HOH A 80 480 72 HOH HOH . G 7 HOH A 81 481 104 HOH HOH . G 7 HOH A 82 482 81 HOH HOH . G 7 HOH A 83 483 110 HOH HOH . G 7 HOH A 84 484 64 HOH HOH . G 7 HOH A 85 485 71 HOH HOH . G 7 HOH A 86 486 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA MGP . B . D 4 22.722 -11.932 28.617 0.43 46.76 ? PA MGP 303 A 1 HETATM 2 P PA MGP . C . D 4 22.713 -11.821 28.558 0.36 46.65 ? PA MGP 303 A 1 HETATM 3 O O1A MGP . B . D 4 21.768 -10.875 29.179 0.43 47.2 -1 O1A MGP 303 A 1 HETATM 4 O O1A MGP . C . D 4 21.79 -10.835 29.275 0.36 47.16 -1 O1A MGP 303 A 1 HETATM 5 O O2A MGP . B . D 4 23.51 -12.574 29.721 0.43 46.24 ? O2A MGP 303 A 1 HETATM 6 O O2A MGP . C . D 4 23.464 -12.655 29.553 0.36 46.12 ? O2A MGP 303 A 1 HETATM 7 O O3A MGP . B . D 4 21.827 -13.093 27.814 0.43 50.7 ? O3A MGP 303 A 1 HETATM 8 O O3A MGP . C . D 4 21.813 -12.804 27.549 0.36 51.39 ? O3A MGP 303 A 1 HETATM 9 O O5' MGP . B . D 4 23.759 -11.277 27.597 0.43 40.55 ? O5' MGP 303 A 1 HETATM 10 O O5' MGP . C . D 4 23.787 -11.037 27.684 0.36 41.01 ? O5' MGP 303 A 1 HETATM 11 P PB MGP . B . D 4 22.219 -14.444 26.921 0.43 56 ? PB MGP 303 A 1 HETATM 12 P PB MGP . C . D 4 22.108 -14.264 26.802 0.36 55.7 ? PB MGP 303 A 1 HETATM 13 O O1B MGP . B . D 4 21.832 -14.239 25.474 0.43 49.97 -1 O1B MGP 303 A 1 HETATM 14 O O1B MGP . C . D 4 21.798 -14.145 25.329 0.36 49.74 -1 O1B MGP 303 A 1 HETATM 15 O O2B MGP . B . D 4 23.695 -14.712 27.053 0.43 57.22 ? O2B MGP 303 A 1 HETATM 16 O O2B MGP . C . D 4 23.553 -14.631 27.007 0.36 57 ? O2B MGP 303 A 1 HETATM 17 O O3B MGP . B . D 4 21.405 -15.747 27.508 0.43 53.42 ? O3B MGP 303 A 1 HETATM 18 O O3B MGP . C . D 4 21.177 -15.44 27.498 0.36 53.84 ? O3B MGP 303 A 1 HETATM 19 P PC MGP . B . D 4 20.344 -16.787 26.78 0.43 52.21 ? PC MGP 303 A 1 HETATM 20 P PC MGP . C . D 4 20.887 -15.826 29.095 0.36 49.97 ? PC MGP 303 A 1 HETATM 21 O O1C MGP . B . D 4 19.352 -15.978 25.965 0.43 49.13 -1 O1C MGP 303 A 1 HETATM 22 O O1C MGP . C . D 4 19.686 -16.745 29.178 0.36 56.29 -1 O1C MGP 303 A 1 HETATM 23 O O2C MGP . B . D 4 21.123 -17.74 25.908 0.43 48.56 ? O2C MGP 303 A 1 HETATM 24 O O2C MGP . C . D 4 22.095 -16.517 29.684 0.36 56.45 ? O2C MGP 303 A 1 HETATM 25 O O3C MGP . B . D 4 19.619 -17.574 27.846 0.43 56.68 -1 O3C MGP 303 A 1 HETATM 26 O O3C MGP . C . D 4 20.616 -14.558 29.862 0.36 53.91 -1 O3C MGP 303 A 1 HETATM 27 C C5' MGP . B . D 4 23.263 -10.376 26.598 0.43 39.78 ? C5' MGP 303 A 1 HETATM 28 C C5' MGP . C . D 4 23.32 -10.191 26.627 0.36 40.02 ? C5' MGP 303 A 1 HETATM 29 C C4' MGP . B . D 4 24.179 -9.173 26.565 0.43 37.52 ? C4' MGP 303 A 1 HETATM 30 C C4' MGP . C . D 4 24.221 -8.978 26.585 0.36 37.5 ? C4' MGP 303 A 1 HETATM 31 O O4' MGP . B . D 4 24.029 -8.484 27.834 0.43 36.11 ? O4' MGP 303 A 1 HETATM 32 O O4' MGP . C . D 4 24.04 -8.246 27.829 0.36 36.39 ? O4' MGP 303 A 1 HETATM 33 C C3' MGP . B . D 4 25.643 -9.608 26.558 0.43 34.98 ? C3' MGP 303 A 1 HETATM 34 C C3' MGP . C . D 4 25.687 -9.405 26.608 0.36 35.17 ? C3' MGP 303 A 1 HETATM 35 O O3' MGP . B . D 4 26.113 -9.886 25.236 0.43 31.25 ? O3' MGP 303 A 1 HETATM 36 O O3' MGP . C . D 4 26.173 -9.686 25.295 0.36 31.56 ? O3' MGP 303 A 1 HETATM 37 C C2' MGP . B . D 4 26.349 -8.4 27.2 0.43 34.97 ? C2' MGP 303 A 1 HETATM 38 C C2' MGP . C . D 4 26.364 -8.173 27.23 0.36 34.81 ? C2' MGP 303 A 1 HETATM 39 O O2' MGP . B . D 4 26.535 -7.352 26.24 0.43 30.51 ? O2' MGP 303 A 1 HETATM 40 O O2' MGP . C . D 4 26.482 -7.134 26.252 0.36 30.45 ? O2' MGP 303 A 1 HETATM 41 C C1' MGP . B . D 4 25.289 -7.948 28.217 0.43 35.6 ? C1' MGP 303 A 1 HETATM 42 C C1' MGP . C . D 4 25.301 -7.736 28.247 0.36 35.51 ? C1' MGP 303 A 1 HETATM 43 N N9 MGP . B . D 4 25.599 -8.423 29.606 0.43 37.06 ? N9 MGP 303 A 1 HETATM 44 N N9 MGP . C . D 4 25.605 -8.224 29.635 0.36 36.9 ? N9 MGP 303 A 1 HETATM 45 C C8 MGP . B . D 4 25.552 -9.692 30.066 0.43 39.07 ? C8 MGP 303 A 1 HETATM 46 C C8 MGP . C . D 4 25.558 -9.491 30.098 0.36 39.1 ? C8 MGP 303 A 1 HETATM 47 N N7 MGP . B . D 4 25.888 -9.677 31.367 0.43 39.85 ? N7 MGP 303 A 1 HETATM 48 N N7 MGP . C . D 4 25.894 -9.474 31.399 0.36 39.48 ? N7 MGP 303 A 1 HETATM 49 C CM7 MGP . B . D 4 25.951 -10.917 32.176 0.43 36.78 ? CM7 MGP 303 A 1 HETATM 50 C CM7 MGP . C . D 4 25.954 -10.711 32.213 0.36 37 ? CM7 MGP 303 A 1 HETATM 51 C C5 MGP . B . D 4 26.137 -8.404 31.723 0.43 36.77 ? C5 MGP 303 A 1 HETATM 52 C C5 MGP . C . D 4 26.148 -8.201 31.754 0.36 36.88 ? C5 MGP 303 A 1 HETATM 53 C C6 MGP . B . D 4 26.516 -7.816 32.93 0.43 39.38 ? C6 MGP 303 A 1 HETATM 54 C C6 MGP . C . D 4 26.53 -7.613 32.963 0.36 39.3 ? C6 MGP 303 A 1 HETATM 55 O O6 MGP . B . D 4 26.689 -8.522 33.93 0.43 39.51 ? O6 MGP 303 A 1 HETATM 56 O O6 MGP . C . D 4 26.704 -8.304 33.967 0.36 39.45 ? O6 MGP 303 A 1 HETATM 57 N N1 MGP . B . D 4 26.7 -6.518 33.04 0.43 37.07 ? N1 MGP 303 A 1 HETATM 58 N N1 MGP . C . D 4 26.716 -6.315 33.063 0.36 37.27 ? N1 MGP 303 A 1 HETATM 59 C C2 MGP . B . D 4 26.493 -5.787 31.906 0.43 36.97 ? C2 MGP 303 A 1 HETATM 60 C C2 MGP . C . D 4 26.511 -5.588 31.929 0.36 37.01 ? C2 MGP 303 A 1 HETATM 61 N N2 MGP . B . D 4 26.677 -4.466 31.988 0.43 38.28 ? N2 MGP 303 A 1 HETATM 62 N N2 MGP . C . D 4 26.7 -4.268 32.008 0.36 38.49 ? N2 MGP 303 A 1 HETATM 63 N N3 MGP . B . D 4 26.123 -6.275 30.679 0.43 38.15 ? N3 MGP 303 A 1 HETATM 64 N N3 MGP . C . D 4 26.138 -6.078 30.704 0.36 38.01 ? N3 MGP 303 A 1 HETATM 65 C C4 MGP . B . D 4 25.946 -7.638 30.606 0.43 37.61 ? C4 MGP 303 A 1 HETATM 66 C C4 MGP . C . D 4 25.957 -7.441 30.634 0.36 37.63 ? C4 MGP 303 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 66 #