data_7V1I # _model_server_result.job_id CjiwrxM7y7J5JRXi0IVi3g _model_server_result.datetime_utc '2024-11-18 11:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7V1I # _exptl.entry_id 7V1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.25 _cell.angle_gamma 90 _cell.entry_id 7V1I _cell.length_a 35.232 _cell.length_b 89.977 _cell.length_c 45.686 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH1 ARG 23 A ARG 28 1_555 C P G7M . A G7M 302 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.707 ? metalc ? metalc1 C OP2 G7M . A G7M 302 1_555 F MG MG . A MG 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc2 D O2A MGP . A MGP 303 1_555 F MG MG . A MG 305 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc3 D O2A MGP . A MGP 303 1_555 F MG MG . A MG 305 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 F MG MG . A MG 305 1_555 G O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 388 n n N HN1 SAH sing 389 n n N HN2 SAH sing 390 n n CA CB SAH sing 391 n n CA C SAH sing 392 n n CA HA SAH sing 393 n n CB CG SAH sing 394 n n CB HB1 SAH sing 395 n n CB HB2 SAH sing 396 n n CG SD SAH sing 397 n n CG HG1 SAH sing 398 n n CG HG2 SAH sing 399 n n SD C5' SAH sing 400 n n C O SAH doub 401 n n C OXT SAH sing 402 n n OXT HXT SAH sing 403 n n C5' C4' SAH sing 404 n n C5' "H5'1" SAH sing 405 n n C5' "H5'2" SAH sing 406 n n C4' O4' SAH sing 407 n n C4' C3' SAH sing 408 n n C4' H4' SAH sing 409 n n O4' C1' SAH sing 410 n n C3' O3' SAH sing 411 n n C3' C2' SAH sing 412 n n C3' H3' SAH sing 413 n n O3' HO3' SAH sing 414 n n C2' O2' SAH sing 415 n n C2' C1' SAH sing 416 n n C2' H2' SAH sing 417 n n O2' HO2' SAH sing 418 n n C1' N9 SAH sing 419 n n C1' H1' SAH sing 420 n n N9 C8 SAH sing 421 n y N9 C4 SAH sing 422 n y C8 N7 SAH doub 423 n y C8 H8 SAH sing 424 n n N7 C5 SAH sing 425 n y C5 C6 SAH sing 426 n y C5 C4 SAH doub 427 n y C6 N6 SAH sing 428 n n C6 N1 SAH doub 429 n y N6 HN61 SAH sing 430 n n N6 HN62 SAH sing 431 n n N1 C2 SAH sing 432 n y C2 N3 SAH doub 433 n y C2 H2 SAH sing 434 n n N3 C4 SAH sing 435 n y # _atom_sites.entry_id 7V1I _atom_sites.fract_transf_matrix[1][1] 0.028383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 600 GOL GOL . C 3 G7M A 1 302 701 G7M G7M . D 4 MGP A 1 303 701 MGP MGP . E 5 SAH A 1 304 702 SAH SAH . F 6 MG A 1 305 1 MG MG . G 7 HOH A 1 401 47 HOH HOH . G 7 HOH A 2 402 67 HOH HOH . G 7 HOH A 3 403 11 HOH HOH . G 7 HOH A 4 404 17 HOH HOH . G 7 HOH A 5 405 5 HOH HOH . G 7 HOH A 6 406 54 HOH HOH . G 7 HOH A 7 407 8 HOH HOH . G 7 HOH A 8 408 34 HOH HOH . G 7 HOH A 9 409 15 HOH HOH . G 7 HOH A 10 410 20 HOH HOH . G 7 HOH A 11 411 49 HOH HOH . G 7 HOH A 12 412 27 HOH HOH . G 7 HOH A 13 413 7 HOH HOH . G 7 HOH A 14 414 89 HOH HOH . G 7 HOH A 15 415 12 HOH HOH . G 7 HOH A 16 416 40 HOH HOH . G 7 HOH A 17 417 82 HOH HOH . G 7 HOH A 18 418 26 HOH HOH . G 7 HOH A 19 419 46 HOH HOH . G 7 HOH A 20 420 4 HOH HOH . G 7 HOH A 21 421 103 HOH HOH . G 7 HOH A 22 422 3 HOH HOH . G 7 HOH A 23 423 108 HOH HOH . G 7 HOH A 24 424 78 HOH HOH . G 7 HOH A 25 425 6 HOH HOH . G 7 HOH A 26 426 111 HOH HOH . G 7 HOH A 27 427 58 HOH HOH . G 7 HOH A 28 428 112 HOH HOH . G 7 HOH A 29 429 33 HOH HOH . G 7 HOH A 30 430 106 HOH HOH . G 7 HOH A 31 431 91 HOH HOH . G 7 HOH A 32 432 9 HOH HOH . G 7 HOH A 33 433 84 HOH HOH . G 7 HOH A 34 434 99 HOH HOH . G 7 HOH A 35 435 37 HOH HOH . G 7 HOH A 36 436 88 HOH HOH . G 7 HOH A 37 437 55 HOH HOH . G 7 HOH A 38 438 94 HOH HOH . G 7 HOH A 39 439 97 HOH HOH . G 7 HOH A 40 440 10 HOH HOH . G 7 HOH A 41 441 48 HOH HOH . G 7 HOH A 42 442 41 HOH HOH . G 7 HOH A 43 443 35 HOH HOH . G 7 HOH A 44 444 56 HOH HOH . G 7 HOH A 45 445 73 HOH HOH . G 7 HOH A 46 446 25 HOH HOH . G 7 HOH A 47 447 31 HOH HOH . G 7 HOH A 48 448 43 HOH HOH . G 7 HOH A 49 449 22 HOH HOH . G 7 HOH A 50 450 18 HOH HOH . G 7 HOH A 51 451 16 HOH HOH . G 7 HOH A 52 452 76 HOH HOH . G 7 HOH A 53 453 38 HOH HOH . G 7 HOH A 54 454 45 HOH HOH . G 7 HOH A 55 455 57 HOH HOH . G 7 HOH A 56 456 75 HOH HOH . G 7 HOH A 57 457 100 HOH HOH . G 7 HOH A 58 458 77 HOH HOH . G 7 HOH A 59 459 101 HOH HOH . G 7 HOH A 60 460 93 HOH HOH . G 7 HOH A 61 461 85 HOH HOH . G 7 HOH A 62 462 86 HOH HOH . G 7 HOH A 63 463 21 HOH HOH . G 7 HOH A 64 464 87 HOH HOH . G 7 HOH A 65 465 107 HOH HOH . G 7 HOH A 66 466 53 HOH HOH . G 7 HOH A 67 467 68 HOH HOH . G 7 HOH A 68 468 98 HOH HOH . G 7 HOH A 69 469 51 HOH HOH . G 7 HOH A 70 470 102 HOH HOH . G 7 HOH A 71 471 32 HOH HOH . G 7 HOH A 72 472 74 HOH HOH . G 7 HOH A 73 473 39 HOH HOH . G 7 HOH A 74 474 24 HOH HOH . G 7 HOH A 75 475 65 HOH HOH . G 7 HOH A 76 476 50 HOH HOH . G 7 HOH A 77 477 105 HOH HOH . G 7 HOH A 78 478 96 HOH HOH . G 7 HOH A 79 479 90 HOH HOH . G 7 HOH A 80 480 72 HOH HOH . G 7 HOH A 81 481 104 HOH HOH . G 7 HOH A 82 482 81 HOH HOH . G 7 HOH A 83 483 110 HOH HOH . G 7 HOH A 84 484 64 HOH HOH . G 7 HOH A 85 485 71 HOH HOH . G 7 HOH A 86 486 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 5 13.996 -21.587 18.791 1 21.87 ? N SAH 304 A 1 HETATM 2 C CA SAH . . . E 5 14.682 -22.266 19.899 1 32.08 ? CA SAH 304 A 1 HETATM 3 C CB SAH . . . E 5 15.694 -21.357 20.566 1 38.18 ? CB SAH 304 A 1 HETATM 4 C CG SAH . . . E 5 16.836 -21.396 19.615 1 33.64 ? CG SAH 304 A 1 HETATM 5 S SD SAH . . . E 5 18.383 -21.733 20.44 1 47.44 ? SD SAH 304 A 1 HETATM 6 C C SAH . . . E 5 13.624 -22.649 20.929 1 42.59 ? C SAH 304 A 1 HETATM 7 O O SAH . . . E 5 13.867 -23.486 21.922 1 29.19 ? O SAH 304 A 1 HETATM 8 O OXT SAH . . . E 5 12.477 -22.17 20.67 1 26.29 -1 OXT SAH 304 A 1 HETATM 9 C C5' SAH . . . E 5 19.561 -21.665 19.05 1 31.06 ? C5' SAH 304 A 1 HETATM 10 C C4' SAH . . . E 5 20.293 -22.971 18.93 1 28.32 ? C4' SAH 304 A 1 HETATM 11 O O4' SAH . . . E 5 21.084 -22.839 17.732 1 36.02 ? O4' SAH 304 A 1 HETATM 12 C C3' SAH . . . E 5 21.251 -23.246 20.107 1 31.92 ? C3' SAH 304 A 1 HETATM 13 O O3' SAH . . . E 5 20.749 -24.356 20.919 1 27.77 ? O3' SAH 304 A 1 HETATM 14 C C2' SAH . . . E 5 22.555 -23.612 19.453 1 33.25 ? C2' SAH 304 A 1 HETATM 15 O O2' SAH . . . E 5 23.026 -24.839 19.978 1 30.63 ? O2' SAH 304 A 1 HETATM 16 C C1' SAH . . . E 5 22.06 -23.841 18.033 1 36.28 ? C1' SAH 304 A 1 HETATM 17 N N9 SAH . . . E 5 23.189 -23.574 17.132 1 27.33 ? N9 SAH 304 A 1 HETATM 18 C C8 SAH . . . E 5 24.073 -22.522 17.21 1 38.64 ? C8 SAH 304 A 1 HETATM 19 N N7 SAH . . . E 5 24.99 -22.654 16.193 1 33.73 ? N7 SAH 304 A 1 HETATM 20 C C5 SAH . . . E 5 24.659 -23.779 15.498 1 36.33 ? C5 SAH 304 A 1 HETATM 21 C C6 SAH . . . E 5 25.194 -24.441 14.389 1 40.06 ? C6 SAH 304 A 1 HETATM 22 N N6 SAH . . . E 5 26.289 -23.978 13.751 1 32.08 ? N6 SAH 304 A 1 HETATM 23 N N1 SAH . . . E 5 24.62 -25.54 13.926 1 38.02 ? N1 SAH 304 A 1 HETATM 24 C C2 SAH . . . E 5 23.545 -26.005 14.577 1 34.71 ? C2 SAH 304 A 1 HETATM 25 N N3 SAH . . . E 5 22.956 -25.483 15.634 1 33.78 ? N3 SAH 304 A 1 HETATM 26 C C4 SAH . . . E 5 23.552 -24.349 16.1 1 33.72 ? C4 SAH 304 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #