data_7V1J # _model_server_result.job_id JpUnKbfyRdfEd6kqn2VGkg _model_server_result.datetime_utc '2024-11-18 11:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7V1J # _exptl.entry_id 7V1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.38 _cell.angle_gamma 90 _cell.entry_id 7V1J _cell.length_a 34.965 _cell.length_b 89.639 _cell.length_c 43.901 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 363 n n N HN1 SAH sing 364 n n N HN2 SAH sing 365 n n CA CB SAH sing 366 n n CA C SAH sing 367 n n CA HA SAH sing 368 n n CB CG SAH sing 369 n n CB HB1 SAH sing 370 n n CB HB2 SAH sing 371 n n CG SD SAH sing 372 n n CG HG1 SAH sing 373 n n CG HG2 SAH sing 374 n n SD C5' SAH sing 375 n n C O SAH doub 376 n n C OXT SAH sing 377 n n OXT HXT SAH sing 378 n n C5' C4' SAH sing 379 n n C5' "H5'1" SAH sing 380 n n C5' "H5'2" SAH sing 381 n n C4' O4' SAH sing 382 n n C4' C3' SAH sing 383 n n C4' H4' SAH sing 384 n n O4' C1' SAH sing 385 n n C3' O3' SAH sing 386 n n C3' C2' SAH sing 387 n n C3' H3' SAH sing 388 n n O3' HO3' SAH sing 389 n n C2' O2' SAH sing 390 n n C2' C1' SAH sing 391 n n C2' H2' SAH sing 392 n n O2' HO2' SAH sing 393 n n C1' N9 SAH sing 394 n n C1' H1' SAH sing 395 n n N9 C8 SAH sing 396 n y N9 C4 SAH sing 397 n y C8 N7 SAH doub 398 n y C8 H8 SAH sing 399 n n N7 C5 SAH sing 400 n y C5 C6 SAH sing 401 n y C5 C4 SAH doub 402 n y C6 N6 SAH sing 403 n n C6 N1 SAH doub 404 n y N6 HN61 SAH sing 405 n n N6 HN62 SAH sing 406 n n N1 C2 SAH sing 407 n y C2 N3 SAH doub 408 n y C2 H2 SAH sing 409 n n N3 C4 SAH sing 410 n y # _atom_sites.entry_id 7V1J _atom_sites.fract_transf_matrix[1][1] 0.0286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000689 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTA A 1 401 401 GTA GTA . C 3 SAH A 1 402 601 SAH SAH . D 4 HOH A 1 501 60 HOH HOH . D 4 HOH A 2 502 96 HOH HOH . D 4 HOH A 3 503 193 HOH HOH . D 4 HOH A 4 504 71 HOH HOH . D 4 HOH A 5 505 113 HOH HOH . D 4 HOH A 6 506 72 HOH HOH . D 4 HOH A 7 507 126 HOH HOH . D 4 HOH A 8 508 22 HOH HOH . D 4 HOH A 9 509 63 HOH HOH . D 4 HOH A 10 510 40 HOH HOH . D 4 HOH A 11 511 90 HOH HOH . D 4 HOH A 12 512 41 HOH HOH . D 4 HOH A 13 513 42 HOH HOH . D 4 HOH A 14 514 44 HOH HOH . D 4 HOH A 15 515 102 HOH HOH . D 4 HOH A 16 516 183 HOH HOH . D 4 HOH A 17 517 4 HOH HOH . D 4 HOH A 18 518 148 HOH HOH . D 4 HOH A 19 519 78 HOH HOH . D 4 HOH A 20 520 130 HOH HOH . D 4 HOH A 21 521 77 HOH HOH . D 4 HOH A 22 522 54 HOH HOH . D 4 HOH A 23 523 65 HOH HOH . D 4 HOH A 24 524 2 HOH HOH . D 4 HOH A 25 525 184 HOH HOH . D 4 HOH A 26 526 100 HOH HOH . D 4 HOH A 27 527 5 HOH HOH . D 4 HOH A 28 528 159 HOH HOH . D 4 HOH A 29 529 154 HOH HOH . D 4 HOH A 30 530 27 HOH HOH . D 4 HOH A 31 531 91 HOH HOH . D 4 HOH A 32 532 129 HOH HOH . D 4 HOH A 33 533 170 HOH HOH . D 4 HOH A 34 534 30 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 11 HOH HOH . D 4 HOH A 37 537 186 HOH HOH . D 4 HOH A 38 538 18 HOH HOH . D 4 HOH A 39 539 34 HOH HOH . D 4 HOH A 40 540 73 HOH HOH . D 4 HOH A 41 541 8 HOH HOH . D 4 HOH A 42 542 133 HOH HOH . D 4 HOH A 43 543 24 HOH HOH . D 4 HOH A 44 544 23 HOH HOH . D 4 HOH A 45 545 50 HOH HOH . D 4 HOH A 46 546 48 HOH HOH . D 4 HOH A 47 547 10 HOH HOH . D 4 HOH A 48 548 131 HOH HOH . D 4 HOH A 49 549 118 HOH HOH . D 4 HOH A 50 550 128 HOH HOH . D 4 HOH A 51 551 99 HOH HOH . D 4 HOH A 52 552 114 HOH HOH . D 4 HOH A 53 553 64 HOH HOH . D 4 HOH A 54 554 69 HOH HOH . D 4 HOH A 55 555 26 HOH HOH . D 4 HOH A 56 556 17 HOH HOH . D 4 HOH A 57 557 74 HOH HOH . D 4 HOH A 58 558 39 HOH HOH . D 4 HOH A 59 559 87 HOH HOH . D 4 HOH A 60 560 168 HOH HOH . D 4 HOH A 61 561 107 HOH HOH . D 4 HOH A 62 562 53 HOH HOH . D 4 HOH A 63 563 132 HOH HOH . D 4 HOH A 64 564 81 HOH HOH . D 4 HOH A 65 565 45 HOH HOH . D 4 HOH A 66 566 14 HOH HOH . D 4 HOH A 67 567 66 HOH HOH . D 4 HOH A 68 568 95 HOH HOH . D 4 HOH A 69 569 139 HOH HOH . D 4 HOH A 70 570 68 HOH HOH . D 4 HOH A 71 571 67 HOH HOH . D 4 HOH A 72 572 82 HOH HOH . D 4 HOH A 73 573 70 HOH HOH . D 4 HOH A 74 574 16 HOH HOH . D 4 HOH A 75 575 155 HOH HOH . D 4 HOH A 76 576 46 HOH HOH . D 4 HOH A 77 577 12 HOH HOH . D 4 HOH A 78 578 62 HOH HOH . D 4 HOH A 79 579 58 HOH HOH . D 4 HOH A 80 580 116 HOH HOH . D 4 HOH A 81 581 175 HOH HOH . D 4 HOH A 82 582 188 HOH HOH . D 4 HOH A 83 583 156 HOH HOH . D 4 HOH A 84 584 146 HOH HOH . D 4 HOH A 85 585 61 HOH HOH . D 4 HOH A 86 586 149 HOH HOH . D 4 HOH A 87 587 127 HOH HOH . D 4 HOH A 88 588 161 HOH HOH . D 4 HOH A 89 589 192 HOH HOH . D 4 HOH A 90 590 37 HOH HOH . D 4 HOH A 91 591 94 HOH HOH . D 4 HOH A 92 592 84 HOH HOH . D 4 HOH A 93 593 92 HOH HOH . D 4 HOH A 94 594 29 HOH HOH . D 4 HOH A 95 595 167 HOH HOH . D 4 HOH A 96 596 109 HOH HOH . D 4 HOH A 97 597 136 HOH HOH . D 4 HOH A 98 598 15 HOH HOH . D 4 HOH A 99 599 43 HOH HOH . D 4 HOH A 100 600 86 HOH HOH . D 4 HOH A 101 601 108 HOH HOH . D 4 HOH A 102 602 52 HOH HOH . D 4 HOH A 103 603 36 HOH HOH . D 4 HOH A 104 604 121 HOH HOH . D 4 HOH A 105 605 120 HOH HOH . D 4 HOH A 106 606 59 HOH HOH . D 4 HOH A 107 607 80 HOH HOH . D 4 HOH A 108 608 38 HOH HOH . D 4 HOH A 109 609 21 HOH HOH . D 4 HOH A 110 610 76 HOH HOH . D 4 HOH A 111 611 6 HOH HOH . D 4 HOH A 112 612 32 HOH HOH . D 4 HOH A 113 613 150 HOH HOH . D 4 HOH A 114 614 142 HOH HOH . D 4 HOH A 115 615 85 HOH HOH . D 4 HOH A 116 616 101 HOH HOH . D 4 HOH A 117 617 194 HOH HOH . D 4 HOH A 118 618 173 HOH HOH . D 4 HOH A 119 619 112 HOH HOH . D 4 HOH A 120 620 93 HOH HOH . D 4 HOH A 121 621 79 HOH HOH . D 4 HOH A 122 622 57 HOH HOH . D 4 HOH A 123 623 55 HOH HOH . D 4 HOH A 124 624 106 HOH HOH . D 4 HOH A 125 625 97 HOH HOH . D 4 HOH A 126 626 119 HOH HOH . D 4 HOH A 127 627 145 HOH HOH . D 4 HOH A 128 628 189 HOH HOH . D 4 HOH A 129 629 151 HOH HOH . D 4 HOH A 130 630 110 HOH HOH . D 4 HOH A 131 631 160 HOH HOH . D 4 HOH A 132 632 104 HOH HOH . D 4 HOH A 133 633 137 HOH HOH . D 4 HOH A 134 634 111 HOH HOH . D 4 HOH A 135 635 138 HOH HOH . D 4 HOH A 136 636 162 HOH HOH . D 4 HOH A 137 637 179 HOH HOH . D 4 HOH A 138 638 135 HOH HOH . D 4 HOH A 139 639 134 HOH HOH . D 4 HOH A 140 640 89 HOH HOH . D 4 HOH A 141 641 176 HOH HOH . D 4 HOH A 142 642 158 HOH HOH . D 4 HOH A 143 643 174 HOH HOH . D 4 HOH A 144 644 187 HOH HOH . D 4 HOH A 145 645 177 HOH HOH . D 4 HOH A 146 646 172 HOH HOH . D 4 HOH A 147 647 117 HOH HOH . D 4 HOH A 148 648 190 HOH HOH . D 4 HOH A 149 649 178 HOH HOH . D 4 HOH A 150 650 98 HOH HOH . D 4 HOH A 151 651 83 HOH HOH . D 4 HOH A 152 652 103 HOH HOH . D 4 HOH A 153 653 171 HOH HOH . D 4 HOH A 154 654 88 HOH HOH . D 4 HOH A 155 655 165 HOH HOH . D 4 HOH A 156 656 185 HOH HOH . D 4 HOH A 157 657 180 HOH HOH . D 4 HOH A 158 658 147 HOH HOH . D 4 HOH A 159 659 153 HOH HOH . D 4 HOH A 160 660 157 HOH HOH . D 4 HOH A 161 661 124 HOH HOH . D 4 HOH A 162 662 163 HOH HOH . D 4 HOH A 163 663 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 2.559 21.463 17.709 1 14.08 ? N SAH 402 A 1 HETATM 2 C CA SAH . . . C 3 1.985 22.053 18.915 1 16.23 ? CA SAH 402 A 1 HETATM 3 C CB SAH . . . C 3 1.046 21.072 19.632 1 21.03 ? CB SAH 402 A 1 HETATM 4 C CG SAH . . . C 3 -0.067 20.832 18.654 1 26.07 ? CG SAH 402 A 1 HETATM 5 S SD SAH . . . C 3 -1.683 21.296 19.294 1 35.69 ? SD SAH 402 A 1 HETATM 6 C C SAH . . . C 3 3.052 22.468 19.929 1 20.03 ? C SAH 402 A 1 HETATM 7 O O SAH . . . C 3 2.741 23.212 20.94 1 15.26 ? O SAH 402 A 1 HETATM 8 O OXT SAH . . . C 3 4.237 22.028 19.735 1 18.27 -1 OXT SAH 402 A 1 HETATM 9 C C5' SAH . . . C 3 -2.826 21.34 17.868 1 24.79 ? C5' SAH 402 A 1 HETATM 10 C C4' SAH . . . C 3 -3.661 22.578 17.825 1 19.5 ? C4' SAH 402 A 1 HETATM 11 O O4' SAH . . . C 3 -4.519 22.566 16.672 1 23.3 ? O4' SAH 402 A 1 HETATM 12 C C3' SAH . . . C 3 -4.55 22.793 19.06 1 22.61 ? C3' SAH 402 A 1 HETATM 13 O O3' SAH . . . C 3 -4.133 23.937 19.823 1 18.32 ? O3' SAH 402 A 1 HETATM 14 C C2' SAH . . . C 3 -5.944 23.028 18.463 1 20.19 ? C2' SAH 402 A 1 HETATM 15 O O2' SAH . . . C 3 -6.582 24.066 19.214 1 18.87 ? O2' SAH 402 A 1 HETATM 16 C C1' SAH . . . C 3 -5.54 23.459 17.054 1 15.05 ? C1' SAH 402 A 1 HETATM 17 N N9 SAH . . . C 3 -6.634 23.224 16.11 1 21.42 ? N9 SAH 402 A 1 HETATM 18 C C8 SAH . . . C 3 -7.586 22.246 16.174 1 19.39 ? C8 SAH 402 A 1 HETATM 19 N N7 SAH . . . C 3 -8.401 22.407 15.12 1 21.09 ? N7 SAH 402 A 1 HETATM 20 C C5 SAH . . . C 3 -7.962 23.473 14.419 1 21.3 ? C5 SAH 402 A 1 HETATM 21 C C6 SAH . . . C 3 -8.405 24.079 13.265 1 22.41 ? C6 SAH 402 A 1 HETATM 22 N N6 SAH . . . C 3 -9.484 23.628 12.606 1 25.45 ? N6 SAH 402 A 1 HETATM 23 N N1 SAH . . . C 3 -7.745 25.14 12.776 1 22.99 ? N1 SAH 402 A 1 HETATM 24 C C2 SAH . . . C 3 -6.677 25.569 13.445 1 19.07 ? C2 SAH 402 A 1 HETATM 25 N N3 SAH . . . C 3 -6.199 25.042 14.55 1 16.25 ? N3 SAH 402 A 1 HETATM 26 C C4 SAH . . . C 3 -6.86 23.967 15.04 1 19.86 ? C4 SAH 402 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #