data_7V1R # _model_server_result.job_id 3F_beodYY0UkPzmarfVl-w _model_server_result.datetime_utc '2025-09-12 16:24:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":302}' # _entry.id 7V1R # _exptl.entry_id 7V1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.03 _cell.angle_gamma 90 _cell.entry_id 7V1R _cell.length_a 53.944 _cell.length_b 237.485 _cell.length_c 68.784 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,I,J,K,L,M,N,O,P,Q,R,S,T,AA,BA,CA,DA,EA,FA,QA,RA,TA,UA 1 1 C,F,G,H,U,V,W,X,Y,Z,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,SA,VA,WA,XA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 P N N ? 3 V N N ? 3 BA N N ? 3 EA N N ? 3 HA N N ? 3 LA N N ? 3 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 251 A GLN 251 1_555 L ZN ZN . A ZN 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 L ZN ZN . A ZN 304 1_555 E O GLN 251 E GLN 251 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 B OE2 GLU 196 B GLU 196 1_555 T ZN ZN . B ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 B O GLN 251 B GLN 251 1_555 Q ZN ZN . B ZN 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 Q ZN ZN . B ZN 303 1_555 D O GLN 251 D GLN 251 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.973 ? metalc ? metalc6 S ZN ZN . B ZN 305 1_455 F OE1 GLU 43 F GLU 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc7 C OE1 GLU 43 C GLU 43 1_555 X ZN ZN . C ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc8 C O GLN 251 C GLN 251 1_555 W ZN ZN . C ZN 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc9 W ZN ZN . C ZN 303 1_555 G O GLN 251 G GLN 251 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.115 ? metalc ? metalc10 E OE1 GLU 196 E GLU 196 1_555 FA ZN ZN . E ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc11 F O GLN 251 F GLN 251 1_555 IA ZN ZN . F ZN 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc12 IA ZN ZN . F ZN 303 1_555 H O GLN 251 H GLN 251 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.986 ? metalc ? metalc13 G OE2 GLU 196 G GLU 196 1_555 MA ZN ZN . G ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc14 H OE2 GLU 196 H GLU 196 1_555 PA ZN ZN . H ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 7V1R _atom_sites.fract_transf_matrix[1][1] 0.018538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00788 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IPA A 1 301 1 IPA IPA . J 3 NAD A 1 302 990 NAD NAD . K 4 ZN A 1 303 1 ZN ZN . L 4 ZN A 1 304 2 ZN ZN . M 4 ZN A 1 305 8 ZN ZN . N 4 ZN A 1 306 15 ZN ZN . O 2 IPA B 1 301 7 IPA IPA . P 3 NAD B 1 302 991 NAD NAD . Q 4 ZN B 1 303 3 ZN ZN . R 4 ZN B 1 304 9 ZN ZN . S 4 ZN B 1 305 10 ZN ZN . T 4 ZN B 1 306 11 ZN ZN . U 2 IPA C 1 301 6 IPA IPA . V 3 NAD C 1 302 992 NAD NAD . W 4 ZN C 1 303 6 ZN ZN . X 4 ZN C 1 304 12 ZN ZN . Y 4 ZN C 1 305 13 ZN ZN . Z 4 ZN C 1 306 16 ZN ZN . AA 2 IPA D 1 301 8 IPA IPA . BA 3 NAD D 1 302 993 NAD NAD . CA 4 ZN D 1 303 17 ZN ZN . DA 2 IPA E 1 301 4 IPA IPA . EA 3 NAD E 1 302 994 NAD NAD . FA 4 ZN E 1 303 4 ZN ZN . GA 2 IPA F 1 301 3 IPA IPA . HA 3 NAD F 1 302 995 NAD NAD . IA 4 ZN F 1 303 7 ZN ZN . JA 4 ZN F 1 304 18 ZN ZN . KA 2 IPA G 1 301 2 IPA IPA . LA 3 NAD G 1 302 996 NAD NAD . MA 4 ZN G 1 303 14 ZN ZN . NA 2 IPA H 1 301 5 IPA IPA . OA 3 NAD H 1 302 997 NAD NAD . PA 4 ZN H 1 303 5 ZN ZN . QA 5 HOH A 1 401 32 HOH HOH . QA 5 HOH A 2 402 30 HOH HOH . QA 5 HOH A 3 403 31 HOH HOH . RA 5 HOH B 1 401 33 HOH HOH . SA 5 HOH C 1 401 11 HOH HOH . SA 5 HOH C 2 402 4 HOH HOH . SA 5 HOH C 3 403 10 HOH HOH . SA 5 HOH C 4 404 15 HOH HOH . SA 5 HOH C 5 405 7 HOH HOH . SA 5 HOH C 6 406 14 HOH HOH . TA 5 HOH D 1 401 27 HOH HOH . TA 5 HOH D 2 402 26 HOH HOH . TA 5 HOH D 3 403 25 HOH HOH . TA 5 HOH D 4 404 28 HOH HOH . UA 5 HOH E 1 401 1 HOH HOH . UA 5 HOH E 2 402 22 HOH HOH . VA 5 HOH F 1 401 21 HOH HOH . VA 5 HOH F 2 402 8 HOH HOH . VA 5 HOH F 3 403 5 HOH HOH . VA 5 HOH F 4 404 12 HOH HOH . VA 5 HOH F 5 405 3 HOH HOH . VA 5 HOH F 6 406 6 HOH HOH . VA 5 HOH F 7 407 9 HOH HOH . VA 5 HOH F 8 408 2 HOH HOH . VA 5 HOH F 9 409 20 HOH HOH . WA 5 HOH G 1 401 17 HOH HOH . WA 5 HOH G 2 402 16 HOH HOH . WA 5 HOH G 3 403 19 HOH HOH . XA 5 HOH H 1 401 35 HOH HOH . XA 5 HOH H 2 402 13 HOH HOH . XA 5 HOH H 3 403 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . OA 3 -12.484 47.137 142.719 1 32.36 ? PA NAD 302 H 1 HETATM 2 O O1A NAD . . . OA 3 -13.473 46.645 143.733 1 32.28 ? O1A NAD 302 H 1 HETATM 3 O O2A NAD . . . OA 3 -12.878 48.266 141.826 1 31.89 ? O2A NAD 302 H 1 HETATM 4 O O5B NAD . . . OA 3 -11.099 47.492 143.452 1 34.13 ? O5B NAD 302 H 1 HETATM 5 C C5B NAD . . . OA 3 -10.022 48.145 142.712 1 33.48 ? C5B NAD 302 H 1 HETATM 6 C C4B NAD . . . OA 3 -9.495 49.296 143.536 1 32.55 ? C4B NAD 302 H 1 HETATM 7 O O4B NAD . . . OA 3 -8.525 50.076 142.786 1 30.75 ? O4B NAD 302 H 1 HETATM 8 C C3B NAD . . . OA 3 -10.552 50.308 144.004 1 33.22 ? C3B NAD 302 H 1 HETATM 9 O O3B NAD . . . OA 3 -10.516 50.36 145.426 1 36.13 ? O3B NAD 302 H 1 HETATM 10 C C2B NAD . . . OA 3 -10.131 51.642 143.367 1 31.28 ? C2B NAD 302 H 1 HETATM 11 O O2B NAD . . . OA 3 -10.444 52.727 144.216 1 31.47 ? O2B NAD 302 H 1 HETATM 12 C C1B NAD . . . OA 3 -8.63 51.434 143.169 1 28.43 ? C1B NAD 302 H 1 HETATM 13 N N9A NAD . . . OA 3 -8.012 52.276 142.141 1 23.77 ? N9A NAD 302 H 1 HETATM 14 C C8A NAD . . . OA 3 -8.457 52.382 140.849 1 23.51 ? C8A NAD 302 H 1 HETATM 15 N N7A NAD . . . OA 3 -7.729 53.174 140.103 1 22.64 ? N7A NAD 302 H 1 HETATM 16 C C5A NAD . . . OA 3 -6.722 53.62 140.943 1 21.47 ? C5A NAD 302 H 1 HETATM 17 C C6A NAD . . . OA 3 -5.628 54.49 140.731 1 20.51 ? C6A NAD 302 H 1 HETATM 18 N N6A NAD . . . OA 3 -5.341 55.068 139.567 1 18.8 ? N6A NAD 302 H 1 HETATM 19 N N1A NAD . . . OA 3 -4.809 54.732 141.782 1 20.69 ? N1A NAD 302 H 1 HETATM 20 C C2A NAD . . . OA 3 -5.088 54.144 142.953 1 21.12 ? C2A NAD 302 H 1 HETATM 21 N N3A NAD . . . OA 3 -6.082 53.308 143.262 1 22.45 ? N3A NAD 302 H 1 HETATM 22 C C4A NAD . . . OA 3 -6.885 53.076 142.206 1 22.48 ? C4A NAD 302 H 1 HETATM 23 O O3 NAD . . . OA 3 -12.027 45.929 141.765 1 30.42 ? O3 NAD 302 H 1 HETATM 24 P PN NAD . . . OA 3 -11.259 44.53 141.945 1 28.77 ? PN NAD 302 H 1 HETATM 25 O O1N NAD . . . OA 3 -12.019 43.429 141.274 1 26.08 ? O1N NAD 302 H 1 HETATM 26 O O2N NAD . . . OA 3 -10.87 44.363 143.377 1 28.33 ? O2N NAD 302 H 1 HETATM 27 O O5D NAD . . . OA 3 -9.982 44.929 141.072 1 28.18 ? O5D NAD 302 H 1 HETATM 28 C C5D NAD . . . OA 3 -8.644 44.711 141.583 1 27.87 ? C5D NAD 302 H 1 HETATM 29 C C4D NAD . . . OA 3 -7.808 44.087 140.497 1 27.06 ? C4D NAD 302 H 1 HETATM 30 O O4D NAD . . . OA 3 -8.283 42.754 140.19 1 26.82 ? O4D NAD 302 H 1 HETATM 31 C C3D NAD . . . OA 3 -7.819 44.869 139.179 1 27.3 ? C3D NAD 302 H 1 HETATM 32 O O3D NAD . . . OA 3 -6.478 45.1 138.758 1 25.21 ? O3D NAD 302 H 1 HETATM 33 C C2D NAD . . . OA 3 -8.686 43.97 138.289 1 27.83 ? C2D NAD 302 H 1 HETATM 34 O O2D NAD . . . OA 3 -8.374 44.146 136.92 1 29.2 ? O2D NAD 302 H 1 HETATM 35 C C1D NAD . . . OA 3 -8.335 42.575 138.789 1 28.8 ? C1D NAD 302 H 1 HETATM 36 N N1N NAD . . . OA 3 -9.351 41.523 138.467 1 32.75 ? N1N NAD 302 H 1 HETATM 37 C C2N NAD . . . OA 3 -10.684 41.672 138.815 1 34.01 ? C2N NAD 302 H 1 HETATM 38 C C3N NAD . . . OA 3 -11.558 40.587 138.735 1 36.74 ? C3N NAD 302 H 1 HETATM 39 C C7N NAD . . . OA 3 -12.969 40.68 139.267 1 39.96 ? C7N NAD 302 H 1 HETATM 40 O O7N NAD . . . OA 3 -13.204 41.347 140.272 1 45.37 ? O7N NAD 302 H 1 HETATM 41 N N7N NAD . . . OA 3 -13.911 40.026 138.605 1 40.55 ? N7N NAD 302 H 1 HETATM 42 C C4N NAD . . . OA 3 -11.118 39.41 138.137 1 37.3 ? C4N NAD 302 H 1 HETATM 43 C C5N NAD . . . OA 3 -9.808 39.298 137.72 1 36.7 ? C5N NAD 302 H 1 HETATM 44 C C6N NAD . . . OA 3 -8.952 40.371 137.863 1 35.26 ? C6N NAD 302 H 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #