data_7V2B # _model_server_result.job_id SKR9qc45kSEJb1nBTJl3AA _model_server_result.datetime_utc '2024-10-19 09:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7V2B # _exptl.entry_id 7V2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7V2B _cell.length_a 118.639 _cell.length_b 118.639 _cell.length_c 78.255 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 7V2B _atom_sites.fract_transf_matrix[1][1] 0.008429 _atom_sites.fract_transf_matrix[1][2] 0.004866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 501 501 GTP GTP . D 2 GTP D 1 501 501 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 2 -68.217 7.218 -3.389 1 127.05 ? PG GTP 501 D 1 HETATM 2 O O1G GTP . . . D 2 -68.87 8.557 -3.117 1 128.68 ? O1G GTP 501 D 1 HETATM 3 O O2G GTP . . . D 2 -68.568 6.253 -2.292 1 128.58 ? O2G GTP 501 D 1 HETATM 4 O O3G GTP . . . D 2 -68.731 6.661 -4.744 1 121.36 ? O3G GTP 501 D 1 HETATM 5 O O3B GTP . . . D 2 -66.607 7.413 -3.45 1 500.21 ? O3B GTP 501 D 1 HETATM 6 P PB GTP . . . D 2 -65.876 8.306 -4.513 1 491.07 ? PB GTP 501 D 1 HETATM 7 O O1B GTP . . . D 2 -66.35 9.726 -4.398 1 490.85 ? O1B GTP 501 D 1 HETATM 8 O O2B GTP . . . D 2 -66.192 7.755 -5.946 1 396.4 ? O2B GTP 501 D 1 HETATM 9 O O3A GTP . . . D 2 -64.28 8.263 -4.29 1 542.59 ? O3A GTP 501 D 1 HETATM 10 P PA GTP . . . D 2 -63.337 9.482 -4.579 1 199.86 ? PA GTP 501 D 1 HETATM 11 O O1A GTP . . . D 2 -63.715 10.105 -5.913 1 188.75 ? O1A GTP 501 D 1 HETATM 12 O O2A GTP . . . D 2 -61.902 8.991 -4.657 1 203.7 ? O2A GTP 501 D 1 HETATM 13 O O5' GTP . . . D 2 -63.475 10.568 -3.423 1 272.8 ? O5' GTP 501 D 1 HETATM 14 C C5' GTP . . . D 2 -63.643 10.14 -2.033 1 269.56 ? C5' GTP 501 D 1 HETATM 15 C C4' GTP . . . D 2 -62.786 10.866 -1.188 1 266.1 ? C4' GTP 501 D 1 HETATM 16 O O4' GTP . . . D 2 -63.537 11.797 -0.299 1 260.09 ? O4' GTP 501 D 1 HETATM 17 C C3' GTP . . . D 2 -62.023 9.892 -0.177 1 274.05 ? C3' GTP 501 D 1 HETATM 18 O O3' GTP . . . D 2 -60.557 9.839 -0.496 1 272.61 ? O3' GTP 501 D 1 HETATM 19 C C2' GTP . . . D 2 -62.202 10.362 0.965 1 274.7 ? C2' GTP 501 D 1 HETATM 20 O O2' GTP . . . D 2 -60.936 10.377 1.709 1 273.84 ? O2' GTP 501 D 1 HETATM 21 C C1' GTP . . . D 2 -62.765 11.881 0.762 1 252.07 ? C1' GTP 501 D 1 HETATM 22 N N9 GTP . . . D 2 -63.484 12.326 1.927 1 241.44 ? N9 GTP 501 D 1 HETATM 23 C C8 GTP . . . D 2 -64.078 11.517 2.864 1 236.95 ? C8 GTP 501 D 1 HETATM 24 N N7 GTP . . . D 2 -64.639 12.346 3.795 1 232.35 ? N7 GTP 501 D 1 HETATM 25 C C5 GTP . . . D 2 -64.387 13.645 3.433 1 230.1 ? C5 GTP 501 D 1 HETATM 26 C C6 GTP . . . D 2 -64.756 14.962 4.073 1 225.51 ? C6 GTP 501 D 1 HETATM 27 O O6 GTP . . . D 2 -65.374 14.982 5.069 1 220.65 ? O6 GTP 501 D 1 HETATM 28 N N1 GTP . . . D 2 -64.36 16.16 3.477 1 226.75 ? N1 GTP 501 D 1 HETATM 29 C C2 GTP . . . D 2 -63.596 16.13 2.248 1 227.34 ? C2 GTP 501 D 1 HETATM 30 N N2 GTP . . . D 2 -63.19 17.353 1.636 1 225.13 ? N2 GTP 501 D 1 HETATM 31 N N3 GTP . . . D 2 -63.249 14.873 1.645 1 229.49 ? N3 GTP 501 D 1 HETATM 32 C C4 GTP . . . D 2 -63.661 13.631 2.262 1 233.66 ? C4 GTP 501 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #