data_7V2T # _model_server_result.job_id G-tXKKH6KmXEQ17p0GbtQg _model_server_result.datetime_utc '2024-10-11 06:22:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1307}' # _entry.id 7V2T # _exptl.entry_id 7V2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.313 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6S)-3-((R)-2,3-dihydroxy-2-methylpropyl)-6-((S)-4-hydroxybutan-2-yl)piperazine-2,5-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7V2T _cell.length_a 100.99 _cell.length_b 100.99 _cell.length_c 131.62 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 198 A HIS 198 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OD1 ASP 200 A ASP 200 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 B O1 AKG . A AKG 1301 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 B O5 AKG . A AKG 1301 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 C FE FE2 . A FE2 1302 1_555 J O HOH . A HOH 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'C12 H22 N2 O5' _chem_comp.formula_weight 274.313 _chem_comp.id 5UQ _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6S)-3-((R)-2,3-dihydroxy-2-methylpropyl)-6-((S)-4-hydroxybutan-2-yl)piperazine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C13 5UQ sing 1 n n O8 C11 5UQ sing 2 n n C13 O6 5UQ sing 3 n n C13 C11 5UQ sing 4 n n C13 C15 5UQ sing 5 n n C15 C17 5UQ sing 6 n n C17 N5 5UQ sing 7 n n C17 C16 5UQ sing 8 n n N5 C18 5UQ sing 9 n n O12 C16 5UQ doub 10 n n C16 N2 5UQ sing 11 n n C18 O10 5UQ doub 12 n n C18 C19 5UQ sing 13 n n O3 C1 5UQ sing 14 n n N2 C19 5UQ sing 15 n n C4 C1 5UQ sing 16 n n C4 C14 5UQ sing 17 n n C19 C14 5UQ sing 18 n n C14 C7 5UQ sing 19 n n C1 H1 5UQ sing 20 n n C1 H2 5UQ sing 21 n n C4 H3 5UQ sing 22 n n C4 H4 5UQ sing 23 n n C7 H5 5UQ sing 24 n n C7 H6 5UQ sing 25 n n C7 H7 5UQ sing 26 n n C9 H8 5UQ sing 27 n n C9 H9 5UQ sing 28 n n C9 H10 5UQ sing 29 n n C11 H11 5UQ sing 30 n n C11 H12 5UQ sing 31 n n C14 H13 5UQ sing 32 n n C15 H14 5UQ sing 33 n n C15 H15 5UQ sing 34 n n C17 H16 5UQ sing 35 n n C19 H17 5UQ sing 36 n n N2 H18 5UQ sing 37 n n N5 H19 5UQ sing 38 n n O3 H20 5UQ sing 39 n n O6 H21 5UQ sing 40 n n O8 H22 5UQ sing 41 n n # _atom_sites.entry_id 7V2T _atom_sites.fract_transf_matrix[1][1] 0.009902 _atom_sites.fract_transf_matrix[1][2] 0.005717 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 1301 1301 AKG AKG . C 3 FE2 A 1 1302 1401 FE2 FE2 . D 4 CL A 1 1303 1 CL CL . E 5 GOL A 1 1305 1 GOL GOL . F 5 GOL A 1 1306 2 GOL GOL . G 6 5UQ A 1 1307 1 5UQ B27 . H 7 DMS A 1 1308 1 DMS DMS . I 7 DMS A 1 1309 2 DMS DMS . J 8 HOH A 1 1401 76 HOH HOH . J 8 HOH A 2 1402 48 HOH HOH . J 8 HOH A 3 1403 104 HOH HOH . J 8 HOH A 4 1404 82 HOH HOH . J 8 HOH A 5 1405 30 HOH HOH . J 8 HOH A 6 1406 25 HOH HOH . J 8 HOH A 7 1407 54 HOH HOH . J 8 HOH A 8 1408 32 HOH HOH . J 8 HOH A 9 1409 45 HOH HOH . J 8 HOH A 10 1410 83 HOH HOH . J 8 HOH A 11 1411 85 HOH HOH . J 8 HOH A 12 1412 9 HOH HOH . J 8 HOH A 13 1413 14 HOH HOH . J 8 HOH A 14 1414 35 HOH HOH . J 8 HOH A 15 1415 2 HOH HOH . J 8 HOH A 16 1416 57 HOH HOH . J 8 HOH A 17 1417 59 HOH HOH . J 8 HOH A 18 1418 88 HOH HOH . J 8 HOH A 19 1419 71 HOH HOH . J 8 HOH A 20 1420 117 HOH HOH . J 8 HOH A 21 1421 89 HOH HOH . J 8 HOH A 22 1422 31 HOH HOH . J 8 HOH A 23 1423 26 HOH HOH . J 8 HOH A 24 1424 49 HOH HOH . J 8 HOH A 25 1425 11 HOH HOH . J 8 HOH A 26 1426 21 HOH HOH . J 8 HOH A 27 1427 1 HOH HOH . J 8 HOH A 28 1428 13 HOH HOH . J 8 HOH A 29 1429 20 HOH HOH . J 8 HOH A 30 1430 15 HOH HOH . J 8 HOH A 31 1431 7 HOH HOH . J 8 HOH A 32 1432 10 HOH HOH . J 8 HOH A 33 1433 102 HOH HOH . J 8 HOH A 34 1434 123 HOH HOH . J 8 HOH A 35 1435 74 HOH HOH . J 8 HOH A 36 1436 64 HOH HOH . J 8 HOH A 37 1437 3 HOH HOH . J 8 HOH A 38 1438 92 HOH HOH . J 8 HOH A 39 1439 12 HOH HOH . J 8 HOH A 40 1440 4 HOH HOH . J 8 HOH A 41 1441 90 HOH HOH . J 8 HOH A 42 1442 41 HOH HOH . J 8 HOH A 43 1443 50 HOH HOH . J 8 HOH A 44 1444 42 HOH HOH . J 8 HOH A 45 1445 43 HOH HOH . J 8 HOH A 46 1446 77 HOH HOH . J 8 HOH A 47 1447 33 HOH HOH . J 8 HOH A 48 1448 5 HOH HOH . J 8 HOH A 49 1449 6 HOH HOH . J 8 HOH A 50 1450 47 HOH HOH . J 8 HOH A 51 1451 118 HOH HOH . J 8 HOH A 52 1452 37 HOH HOH . J 8 HOH A 53 1453 65 HOH HOH . J 8 HOH A 54 1454 53 HOH HOH . J 8 HOH A 55 1455 62 HOH HOH . J 8 HOH A 56 1456 98 HOH HOH . J 8 HOH A 57 1457 27 HOH HOH . J 8 HOH A 58 1458 73 HOH HOH . J 8 HOH A 59 1459 67 HOH HOH . J 8 HOH A 60 1460 51 HOH HOH . J 8 HOH A 61 1461 23 HOH HOH . J 8 HOH A 62 1462 39 HOH HOH . J 8 HOH A 63 1463 99 HOH HOH . J 8 HOH A 64 1464 109 HOH HOH . J 8 HOH A 65 1465 101 HOH HOH . J 8 HOH A 66 1466 44 HOH HOH . J 8 HOH A 67 1467 8 HOH HOH . J 8 HOH A 68 1468 105 HOH HOH . J 8 HOH A 69 1469 61 HOH HOH . J 8 HOH A 70 1470 86 HOH HOH . J 8 HOH A 71 1471 56 HOH HOH . J 8 HOH A 72 1472 38 HOH HOH . J 8 HOH A 73 1473 84 HOH HOH . J 8 HOH A 74 1474 93 HOH HOH . J 8 HOH A 75 1475 70 HOH HOH . J 8 HOH A 76 1476 24 HOH HOH . J 8 HOH A 77 1477 80 HOH HOH . J 8 HOH A 78 1478 75 HOH HOH . J 8 HOH A 79 1479 66 HOH HOH . J 8 HOH A 80 1480 22 HOH HOH . J 8 HOH A 81 1481 60 HOH HOH . J 8 HOH A 82 1482 18 HOH HOH . J 8 HOH A 83 1483 94 HOH HOH . J 8 HOH A 84 1484 72 HOH HOH . J 8 HOH A 85 1485 19 HOH HOH . J 8 HOH A 86 1486 96 HOH HOH . J 8 HOH A 87 1487 68 HOH HOH . J 8 HOH A 88 1488 58 HOH HOH . J 8 HOH A 89 1489 79 HOH HOH . J 8 HOH A 90 1490 103 HOH HOH . J 8 HOH A 91 1491 113 HOH HOH . J 8 HOH A 92 1492 100 HOH HOH . J 8 HOH A 93 1493 116 HOH HOH . J 8 HOH A 94 1494 36 HOH HOH . J 8 HOH A 95 1495 34 HOH HOH . J 8 HOH A 96 1496 112 HOH HOH . J 8 HOH A 97 1497 115 HOH HOH . J 8 HOH A 98 1498 46 HOH HOH . J 8 HOH A 99 1499 78 HOH HOH . J 8 HOH A 100 1500 69 HOH HOH . J 8 HOH A 101 1501 110 HOH HOH . J 8 HOH A 102 1502 52 HOH HOH . J 8 HOH A 103 1503 121 HOH HOH . J 8 HOH A 104 1504 55 HOH HOH . J 8 HOH A 105 1505 126 HOH HOH . J 8 HOH A 106 1506 87 HOH HOH . J 8 HOH A 107 1507 120 HOH HOH . J 8 HOH A 108 1508 114 HOH HOH . J 8 HOH A 109 1509 128 HOH HOH . J 8 HOH A 110 1510 132 HOH HOH . J 8 HOH A 111 1511 97 HOH HOH . J 8 HOH A 112 1512 107 HOH HOH . J 8 HOH A 113 1513 108 HOH HOH . J 8 HOH A 114 1514 131 HOH HOH . J 8 HOH A 115 1515 129 HOH HOH . J 8 HOH A 116 1516 122 HOH HOH . J 8 HOH A 117 1517 40 HOH HOH . J 8 HOH A 118 1518 130 HOH HOH . J 8 HOH A 119 1519 127 HOH HOH . J 8 HOH A 120 1520 125 HOH HOH . J 8 HOH A 121 1521 111 HOH HOH . J 8 HOH A 122 1522 81 HOH HOH . J 8 HOH A 123 1523 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5UQ . . . G 6 35.389 39.282 72.287 1 23.16 ? C1 5UQ 1307 A 1 HETATM 2 C C4 5UQ . . . G 6 36.034 40.663 71.98 1 17.92 ? C4 5UQ 1307 A 1 HETATM 3 C C7 5UQ . . . G 6 34.008 42.073 72.36 1 19.66 ? C7 5UQ 1307 A 1 HETATM 4 C C9 5UQ . . . G 6 41.529 41.723 69.338 1 19.58 ? C9 5UQ 1307 A 1 HETATM 5 C C11 5UQ . . . G 6 40.435 39.642 70.69 1 20.61 ? C11 5UQ 1307 A 1 HETATM 6 C C13 5UQ . . . G 6 40.346 40.992 69.979 1 33.45 ? C13 5UQ 1307 A 1 HETATM 7 C C14 5UQ . . . G 6 35.417 41.764 72.856 1 19.29 ? C14 5UQ 1307 A 1 HETATM 8 C C15 5UQ . . . G 6 38.949 41.68 70.114 1 22.45 ? C15 5UQ 1307 A 1 HETATM 9 C C16 5UQ . . . G 6 37.406 43.544 70.489 1 23.67 ? C16 5UQ 1307 A 1 HETATM 10 C C17 5UQ . . . G 6 38.784 43.006 70.898 1 26.29 ? C17 5UQ 1307 A 1 HETATM 11 C C18 5UQ . . . G 6 37.699 42.747 73.239 1 17.01 ? C18 5UQ 1307 A 1 HETATM 12 C C19 5UQ . . . G 6 36.276 43.049 72.773 1 21.11 ? C19 5UQ 1307 A 1 HETATM 13 N N2 5UQ . . . G 6 36.255 43.542 71.416 1 20.19 ? N2 5UQ 1307 A 1 HETATM 14 N N5 5UQ . . . G 6 38.841 42.74 72.315 1 17.16 ? N5 5UQ 1307 A 1 HETATM 15 O O3 5UQ . . . G 6 36.045 38.289 71.524 1 24.55 ? O3 5UQ 1307 A 1 HETATM 16 O O6 5UQ . . . G 6 40.894 41.568 71.181 1 21.14 ? O6 5UQ 1307 A 1 HETATM 17 O O8 5UQ . . . G 6 41.606 38.981 70.303 1 25.51 ? O8 5UQ 1307 A 1 HETATM 18 O O10 5UQ . . . G 6 37.883 42.507 74.387 1 18.17 ? O10 5UQ 1307 A 1 HETATM 19 O O12 5UQ . . . G 6 37.232 43.954 69.392 1 21.38 ? O12 5UQ 1307 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #