data_7V2U # _model_server_result.job_id FNWAvBT4CW2CL7tv9BqCyA _model_server_result.datetime_utc '2025-06-21 09:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1303}' # _entry.id 7V2U # _exptl.entry_id 7V2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.297 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,5S,6S)-5-methyl-1-[(1S,2S)-2-methyl-1,2,3-tris(oxidanyl)propyl]-2-oxa-7,9-diazabicyclo[4.2.2]decane-8,10-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7V2U _cell.length_a 101.224 _cell.length_b 101.224 _cell.length_c 131.898 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 198 A HIS 198 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 A OD1 ASP 200 A ASP 200 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 B O1 AKG . A AKG 1301 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 B O5 AKG . A AKG 1301 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc6 C FE FE2 . A FE2 1302 1_555 H O HOH . A HOH 1431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? # _chem_comp.formula 'C12 H20 N2 O6' _chem_comp.formula_weight 288.297 _chem_comp.id 8KI _chem_comp.mon_nstd_flag . _chem_comp.name (1S,5S,6S)-5-methyl-1-[(1S,2S)-2-methyl-1,2,3-tris(oxidanyl)propyl]-2-oxa-7,9-diazabicyclo[4.2.2]decane-8,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C01 8KI doub 1 n n C11 C06 8KI sing 2 n n O05 C05 8KI sing 3 n n C05 C06 8KI sing 4 n n C05 C04 8KI sing 5 n n O03 C07 8KI sing 6 n n C07 C06 8KI sing 7 n n C06 O06 8KI sing 8 n n C01 C04 8KI sing 9 n n C01 N01 8KI sing 10 n n O04 C08 8KI sing 11 n n O04 C04 8KI sing 12 n n C08 C10 8KI sing 13 n n C04 N02 8KI sing 14 n n N01 C02 8KI sing 15 n n N02 C03 8KI sing 16 n n C10 C09 8KI sing 17 n n C12 C09 8KI sing 18 n n C02 C09 8KI sing 19 n n C02 C03 8KI sing 20 n n C03 O02 8KI doub 21 n n C12 H1 8KI sing 22 n n C12 H2 8KI sing 23 n n C12 H3 8KI sing 24 n n C09 H4 8KI sing 25 n n C02 H5 8KI sing 26 n n N01 H6 8KI sing 27 n n C10 H7 8KI sing 28 n n C10 H8 8KI sing 29 n n C08 H9 8KI sing 30 n n C08 H10 8KI sing 31 n n N02 H11 8KI sing 32 n n C05 H12 8KI sing 33 n n O05 H13 8KI sing 34 n n C11 H14 8KI sing 35 n n C11 H15 8KI sing 36 n n C11 H16 8KI sing 37 n n O06 H17 8KI sing 38 n n C07 H18 8KI sing 39 n n C07 H19 8KI sing 40 n n O03 H20 8KI sing 41 n n # _atom_sites.entry_id 7V2U _atom_sites.fract_transf_matrix[1][1] 0.009879 _atom_sites.fract_transf_matrix[1][2] 0.005704 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 1301 1301 AKG AKG . C 3 FE2 A 1 1302 1401 FE2 FE2 . D 4 8KI A 1 1303 1 8KI 289 . E 5 GOL A 1 1304 1 GOL GOL . F 5 GOL A 1 1305 2 GOL GOL . G 6 CL A 1 1306 1 CL CL . H 7 HOH A 1 1401 138 HOH HOH . H 7 HOH A 2 1402 34 HOH HOH . H 7 HOH A 3 1403 78 HOH HOH . H 7 HOH A 4 1404 17 HOH HOH . H 7 HOH A 5 1405 133 HOH HOH . H 7 HOH A 6 1406 42 HOH HOH . H 7 HOH A 7 1407 80 HOH HOH . H 7 HOH A 8 1408 132 HOH HOH . H 7 HOH A 9 1409 57 HOH HOH . H 7 HOH A 10 1410 74 HOH HOH . H 7 HOH A 11 1411 73 HOH HOH . H 7 HOH A 12 1412 37 HOH HOH . H 7 HOH A 13 1413 100 HOH HOH . H 7 HOH A 14 1414 8 HOH HOH . H 7 HOH A 15 1415 40 HOH HOH . H 7 HOH A 16 1416 134 HOH HOH . H 7 HOH A 17 1417 6 HOH HOH . H 7 HOH A 18 1418 26 HOH HOH . H 7 HOH A 19 1419 92 HOH HOH . H 7 HOH A 20 1420 125 HOH HOH . H 7 HOH A 21 1421 5 HOH HOH . H 7 HOH A 22 1422 20 HOH HOH . H 7 HOH A 23 1423 118 HOH HOH . H 7 HOH A 24 1424 9 HOH HOH . H 7 HOH A 25 1425 61 HOH HOH . H 7 HOH A 26 1426 88 HOH HOH . H 7 HOH A 27 1427 1 HOH HOH . H 7 HOH A 28 1428 22 HOH HOH . H 7 HOH A 29 1429 115 HOH HOH . H 7 HOH A 30 1430 111 HOH HOH . H 7 HOH A 31 1431 16 HOH HOH . H 7 HOH A 32 1432 122 HOH HOH . H 7 HOH A 33 1433 41 HOH HOH . H 7 HOH A 34 1434 50 HOH HOH . H 7 HOH A 35 1435 53 HOH HOH . H 7 HOH A 36 1436 72 HOH HOH . H 7 HOH A 37 1437 33 HOH HOH . H 7 HOH A 38 1438 14 HOH HOH . H 7 HOH A 39 1439 47 HOH HOH . H 7 HOH A 40 1440 13 HOH HOH . H 7 HOH A 41 1441 7 HOH HOH . H 7 HOH A 42 1442 140 HOH HOH . H 7 HOH A 43 1443 116 HOH HOH . H 7 HOH A 44 1444 84 HOH HOH . H 7 HOH A 45 1445 11 HOH HOH . H 7 HOH A 46 1446 56 HOH HOH . H 7 HOH A 47 1447 15 HOH HOH . H 7 HOH A 48 1448 141 HOH HOH . H 7 HOH A 49 1449 77 HOH HOH . H 7 HOH A 50 1450 3 HOH HOH . H 7 HOH A 51 1451 136 HOH HOH . H 7 HOH A 52 1452 10 HOH HOH . H 7 HOH A 53 1453 69 HOH HOH . H 7 HOH A 54 1454 95 HOH HOH . H 7 HOH A 55 1455 54 HOH HOH . H 7 HOH A 56 1456 59 HOH HOH . H 7 HOH A 57 1457 45 HOH HOH . H 7 HOH A 58 1458 18 HOH HOH . H 7 HOH A 59 1459 25 HOH HOH . H 7 HOH A 60 1460 135 HOH HOH . H 7 HOH A 61 1461 29 HOH HOH . H 7 HOH A 62 1462 51 HOH HOH . H 7 HOH A 63 1463 150 HOH HOH . H 7 HOH A 64 1464 117 HOH HOH . H 7 HOH A 65 1465 96 HOH HOH . H 7 HOH A 66 1466 91 HOH HOH . H 7 HOH A 67 1467 27 HOH HOH . H 7 HOH A 68 1468 65 HOH HOH . H 7 HOH A 69 1469 2 HOH HOH . H 7 HOH A 70 1470 105 HOH HOH . H 7 HOH A 71 1471 94 HOH HOH . H 7 HOH A 72 1472 82 HOH HOH . H 7 HOH A 73 1473 12 HOH HOH . H 7 HOH A 74 1474 102 HOH HOH . H 7 HOH A 75 1475 28 HOH HOH . H 7 HOH A 76 1476 76 HOH HOH . H 7 HOH A 77 1477 35 HOH HOH . H 7 HOH A 78 1478 4 HOH HOH . H 7 HOH A 79 1479 30 HOH HOH . H 7 HOH A 80 1480 32 HOH HOH . H 7 HOH A 81 1481 36 HOH HOH . H 7 HOH A 82 1482 81 HOH HOH . H 7 HOH A 83 1483 68 HOH HOH . H 7 HOH A 84 1484 46 HOH HOH . H 7 HOH A 85 1485 43 HOH HOH . H 7 HOH A 86 1486 67 HOH HOH . H 7 HOH A 87 1487 24 HOH HOH . H 7 HOH A 88 1488 107 HOH HOH . H 7 HOH A 89 1489 110 HOH HOH . H 7 HOH A 90 1490 23 HOH HOH . H 7 HOH A 91 1491 131 HOH HOH . H 7 HOH A 92 1492 144 HOH HOH . H 7 HOH A 93 1493 70 HOH HOH . H 7 HOH A 94 1494 120 HOH HOH . H 7 HOH A 95 1495 19 HOH HOH . H 7 HOH A 96 1496 31 HOH HOH . H 7 HOH A 97 1497 123 HOH HOH . H 7 HOH A 98 1498 79 HOH HOH . H 7 HOH A 99 1499 90 HOH HOH . H 7 HOH A 100 1500 58 HOH HOH . H 7 HOH A 101 1501 97 HOH HOH . H 7 HOH A 102 1502 87 HOH HOH . H 7 HOH A 103 1503 99 HOH HOH . H 7 HOH A 104 1504 38 HOH HOH . H 7 HOH A 105 1505 48 HOH HOH . H 7 HOH A 106 1506 93 HOH HOH . H 7 HOH A 107 1507 71 HOH HOH . H 7 HOH A 108 1508 62 HOH HOH . H 7 HOH A 109 1509 129 HOH HOH . H 7 HOH A 110 1510 127 HOH HOH . H 7 HOH A 111 1511 55 HOH HOH . H 7 HOH A 112 1512 49 HOH HOH . H 7 HOH A 113 1513 39 HOH HOH . H 7 HOH A 114 1514 85 HOH HOH . H 7 HOH A 115 1515 83 HOH HOH . H 7 HOH A 116 1516 63 HOH HOH . H 7 HOH A 117 1517 137 HOH HOH . H 7 HOH A 118 1518 121 HOH HOH . H 7 HOH A 119 1519 66 HOH HOH . H 7 HOH A 120 1520 60 HOH HOH . H 7 HOH A 121 1521 44 HOH HOH . H 7 HOH A 122 1522 86 HOH HOH . H 7 HOH A 123 1523 52 HOH HOH . H 7 HOH A 124 1524 145 HOH HOH . H 7 HOH A 125 1525 109 HOH HOH . H 7 HOH A 126 1526 64 HOH HOH . H 7 HOH A 127 1527 101 HOH HOH . H 7 HOH A 128 1528 126 HOH HOH . H 7 HOH A 129 1529 130 HOH HOH . H 7 HOH A 130 1530 149 HOH HOH . H 7 HOH A 131 1531 119 HOH HOH . H 7 HOH A 132 1532 113 HOH HOH . H 7 HOH A 133 1533 148 HOH HOH . H 7 HOH A 134 1534 106 HOH HOH . H 7 HOH A 135 1535 143 HOH HOH . H 7 HOH A 136 1536 104 HOH HOH . H 7 HOH A 137 1537 108 HOH HOH . H 7 HOH A 138 1538 146 HOH HOH . H 7 HOH A 139 1539 89 HOH HOH . H 7 HOH A 140 1540 21 HOH HOH . H 7 HOH A 141 1541 151 HOH HOH . H 7 HOH A 142 1542 147 HOH HOH . H 7 HOH A 143 1543 112 HOH HOH . H 7 HOH A 144 1544 139 HOH HOH . H 7 HOH A 145 1545 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 8KI . . . D 4 33.947 42.189 72.391 0.88 28.05 ? C12 8KI 1303 A 1 HETATM 2 C C09 8KI . . . D 4 35.295 41.766 72.968 0.88 26.03 ? C09 8KI 1303 A 1 HETATM 3 C C02 8KI . . . D 4 36.266 42.95 72.854 0.88 24.38 ? C02 8KI 1303 A 1 HETATM 4 N N01 8KI . . . D 4 36.268 43.532 71.52 0.88 28.93 ? N01 8KI 1303 A 1 HETATM 5 C C01 8KI . . . D 4 37.222 43.098 70.517 0.88 28.51 ? C01 8KI 1303 A 1 HETATM 6 O O01 8KI . . . D 4 37.203 43.574 69.428 0.88 21.58 ? O01 8KI 1303 A 1 HETATM 7 C C10 8KI . . . D 4 35.818 40.468 72.304 0.88 29.98 ? C10 8KI 1303 A 1 HETATM 8 C C08 8KI . . . D 4 36.26 40.634 70.831 0.88 35.58 ? C08 8KI 1303 A 1 HETATM 9 O O04 8KI . . . D 4 37.691 40.71 70.703 0.88 28.9 ? O04 8KI 1303 A 1 HETATM 10 C C04 8KI . . . D 4 38.251 42.015 70.877 0.88 24.7 ? C04 8KI 1303 A 1 HETATM 11 N N02 8KI . . . D 4 38.631 42.126 72.27 0.88 24.5 ? N02 8KI 1303 A 1 HETATM 12 C C03 8KI . . . D 4 37.675 42.543 73.262 0.88 22.12 ? C03 8KI 1303 A 1 HETATM 13 O O02 8KI . . . D 4 37.986 42.586 74.394 0.88 21.24 ? O02 8KI 1303 A 1 HETATM 14 C C05 8KI . . . D 4 39.52 42.193 70.007 0.88 26.86 ? C05 8KI 1303 A 1 HETATM 15 O O05 8KI . . . D 4 39.857 43.558 69.957 0.88 18.48 ? O05 8KI 1303 A 1 HETATM 16 C C06 8KI . . . D 4 40.742 41.376 70.489 0.88 24.4 ? C06 8KI 1303 A 1 HETATM 17 C C11 8KI . . . D 4 41.88 41.677 69.531 0.88 21.55 ? C11 8KI 1303 A 1 HETATM 18 O O06 8KI . . . D 4 41.127 41.745 71.797 0.88 23.43 ? O06 8KI 1303 A 1 HETATM 19 C C07 8KI . . . D 4 40.484 39.859 70.454 0.88 19.92 ? C07 8KI 1303 A 1 HETATM 20 O O03 8KI . . . D 4 41.717 39.179 70.423 0.88 27.01 ? O03 8KI 1303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #