data_7V2X # _model_server_result.job_id CRVl7WnSh95RxH3GKV5NbA _model_server_result.datetime_utc '2025-06-20 23:11:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1304}' # _entry.id 7V2X # _exptl.entry_id 7V2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.314 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6S)-3-[(2S)-butan-2-yl]-6-[(2R)-2-methyl-2,3-bis(oxidanyl)propyl]piperazine-2,5-dion _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7V2X _cell.length_a 101.097 _cell.length_b 101.097 _cell.length_c 130.377 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 198 A HIS 198 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 A OD1 ASP 200 A ASP 200 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 B O1 AKG . A AKG 1301 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 B O5 AKG . A AKG 1301 1_555 C FE FE2 . A FE2 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 C FE FE2 . A FE2 1302 1_555 F O HOH . A HOH 1425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'C12 H22 N2 O4' _chem_comp.formula_weight 258.314 _chem_comp.id 7QX _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6S)-3-[(2S)-butan-2-yl]-6-[(2R)-2-methyl-2,3-bis(oxidanyl)propyl]piperazine-2,5-dion _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C13 7QX sing 1 n n O01 C02 7QX doub 2 n n C12 C13 7QX sing 3 n n C12 C11 7QX sing 4 n n C13 C14 7QX sing 5 n n C13 O16 7QX sing 6 n n O15 C14 7QX sing 7 n n C02 C11 7QX sing 8 n n C02 N03 7QX sing 9 n n C11 N10 7QX sing 10 n n N03 C04 7QX sing 11 n n C07 C08 7QX sing 12 n n C07 C05 7QX sing 13 n n C06 C05 7QX sing 14 n n N10 C09 7QX sing 15 n n C04 C05 7QX sing 16 n n C04 C09 7QX sing 17 n n C09 O18 7QX doub 18 n n C04 H1 7QX sing 19 n n C05 H2 7QX sing 20 n n C06 H3 7QX sing 21 n n C06 H4 7QX sing 22 n n C06 H5 7QX sing 23 n n C07 H6 7QX sing 24 n n C07 H7 7QX sing 25 n n C08 H8 7QX sing 26 n n C08 H9 7QX sing 27 n n C08 H10 7QX sing 28 n n C11 H11 7QX sing 29 n n C12 H12 7QX sing 30 n n C12 H13 7QX sing 31 n n C14 H14 7QX sing 32 n n C14 H15 7QX sing 33 n n C17 H16 7QX sing 34 n n C17 H17 7QX sing 35 n n C17 H18 7QX sing 36 n n N03 H19 7QX sing 37 n n N10 H20 7QX sing 38 n n O15 H21 7QX sing 39 n n O16 H22 7QX sing 40 n n # _atom_sites.entry_id 7V2X _atom_sites.fract_transf_matrix[1][1] 0.009891 _atom_sites.fract_transf_matrix[1][2] 0.005711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 1301 1301 AKG AKG . C 3 FE2 A 1 1302 1401 FE2 FE2 . D 4 GOL A 1 1303 1 GOL GOL . E 5 7QX A 1 1304 1 7QX G25 . F 6 HOH A 1 1401 60 HOH HOH . F 6 HOH A 2 1402 51 HOH HOH . F 6 HOH A 3 1403 38 HOH HOH . F 6 HOH A 4 1404 49 HOH HOH . F 6 HOH A 5 1405 71 HOH HOH . F 6 HOH A 6 1406 22 HOH HOH . F 6 HOH A 7 1407 3 HOH HOH . F 6 HOH A 8 1408 58 HOH HOH . F 6 HOH A 9 1409 28 HOH HOH . F 6 HOH A 10 1410 5 HOH HOH . F 6 HOH A 11 1411 26 HOH HOH . F 6 HOH A 12 1412 95 HOH HOH . F 6 HOH A 13 1413 92 HOH HOH . F 6 HOH A 14 1414 18 HOH HOH . F 6 HOH A 15 1415 50 HOH HOH . F 6 HOH A 16 1416 65 HOH HOH . F 6 HOH A 17 1417 91 HOH HOH . F 6 HOH A 18 1418 47 HOH HOH . F 6 HOH A 19 1419 36 HOH HOH . F 6 HOH A 20 1420 80 HOH HOH . F 6 HOH A 21 1421 31 HOH HOH . F 6 HOH A 22 1422 13 HOH HOH . F 6 HOH A 23 1423 17 HOH HOH . F 6 HOH A 24 1424 42 HOH HOH . F 6 HOH A 25 1425 9 HOH HOH . F 6 HOH A 26 1426 11 HOH HOH . F 6 HOH A 27 1427 14 HOH HOH . F 6 HOH A 28 1428 59 HOH HOH . F 6 HOH A 29 1429 6 HOH HOH . F 6 HOH A 30 1430 78 HOH HOH . F 6 HOH A 31 1431 67 HOH HOH . F 6 HOH A 32 1432 19 HOH HOH . F 6 HOH A 33 1433 94 HOH HOH . F 6 HOH A 34 1434 34 HOH HOH . F 6 HOH A 35 1435 39 HOH HOH . F 6 HOH A 36 1436 81 HOH HOH . F 6 HOH A 37 1437 16 HOH HOH . F 6 HOH A 38 1438 43 HOH HOH . F 6 HOH A 39 1439 1 HOH HOH . F 6 HOH A 40 1440 53 HOH HOH . F 6 HOH A 41 1441 30 HOH HOH . F 6 HOH A 42 1442 93 HOH HOH . F 6 HOH A 43 1443 70 HOH HOH . F 6 HOH A 44 1444 54 HOH HOH . F 6 HOH A 45 1445 84 HOH HOH . F 6 HOH A 46 1446 12 HOH HOH . F 6 HOH A 47 1447 61 HOH HOH . F 6 HOH A 48 1448 45 HOH HOH . F 6 HOH A 49 1449 100 HOH HOH . F 6 HOH A 50 1450 66 HOH HOH . F 6 HOH A 51 1451 99 HOH HOH . F 6 HOH A 52 1452 10 HOH HOH . F 6 HOH A 53 1453 2 HOH HOH . F 6 HOH A 54 1454 7 HOH HOH . F 6 HOH A 55 1455 97 HOH HOH . F 6 HOH A 56 1456 35 HOH HOH . F 6 HOH A 57 1457 15 HOH HOH . F 6 HOH A 58 1458 21 HOH HOH . F 6 HOH A 59 1459 25 HOH HOH . F 6 HOH A 60 1460 4 HOH HOH . F 6 HOH A 61 1461 98 HOH HOH . F 6 HOH A 62 1462 37 HOH HOH . F 6 HOH A 63 1463 72 HOH HOH . F 6 HOH A 64 1464 77 HOH HOH . F 6 HOH A 65 1465 41 HOH HOH . F 6 HOH A 66 1466 87 HOH HOH . F 6 HOH A 67 1467 23 HOH HOH . F 6 HOH A 68 1468 69 HOH HOH . F 6 HOH A 69 1469 73 HOH HOH . F 6 HOH A 70 1470 33 HOH HOH . F 6 HOH A 71 1471 27 HOH HOH . F 6 HOH A 72 1472 56 HOH HOH . F 6 HOH A 73 1473 96 HOH HOH . F 6 HOH A 74 1474 62 HOH HOH . F 6 HOH A 75 1475 46 HOH HOH . F 6 HOH A 76 1476 44 HOH HOH . F 6 HOH A 77 1477 63 HOH HOH . F 6 HOH A 78 1478 64 HOH HOH . F 6 HOH A 79 1479 79 HOH HOH . F 6 HOH A 80 1480 40 HOH HOH . F 6 HOH A 81 1481 68 HOH HOH . F 6 HOH A 82 1482 52 HOH HOH . F 6 HOH A 83 1483 32 HOH HOH . F 6 HOH A 84 1484 75 HOH HOH . F 6 HOH A 85 1485 74 HOH HOH . F 6 HOH A 86 1486 76 HOH HOH . F 6 HOH A 87 1487 55 HOH HOH . F 6 HOH A 88 1488 89 HOH HOH . F 6 HOH A 89 1489 101 HOH HOH . F 6 HOH A 90 1490 48 HOH HOH . F 6 HOH A 91 1492 102 HOH HOH . F 6 HOH A 92 1493 83 HOH HOH . F 6 HOH A 93 1494 86 HOH HOH . F 6 HOH A 94 1495 88 HOH HOH . F 6 HOH A 95 1496 85 HOH HOH . F 6 HOH A 96 1497 90 HOH HOH . F 6 HOH A 97 1498 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 7QX . . . E 5 37.301 43.511 69.613 1 40.18 ? C02 7QX 1304 A 1 HETATM 2 C C04 7QX . . . E 5 36.178 43.032 71.866 1 33.1 ? C04 7QX 1304 A 1 HETATM 3 C C05 7QX . . . E 5 35.253 41.852 72.023 1 32.13 ? C05 7QX 1304 A 1 HETATM 4 C C06 7QX . . . E 5 33.92 42.213 71.385 1 36.9 ? C06 7QX 1304 A 1 HETATM 5 C C07 7QX . . . E 5 35.851 40.602 71.307 1 31.65 ? C07 7QX 1304 A 1 HETATM 6 C C08 7QX . . . E 5 34.974 39.337 71.561 1 38.57 ? C08 7QX 1304 A 1 HETATM 7 C C09 7QX . . . E 5 37.558 42.683 72.48 1 34.06 ? C09 7QX 1304 A 1 HETATM 8 C C11 7QX . . . E 5 38.633 42.956 70.177 1 40.47 ? C11 7QX 1304 A 1 HETATM 9 C C12 7QX . . . E 5 38.934 41.666 69.372 1 38.06 ? C12 7QX 1304 A 1 HETATM 10 C C13 7QX . . . E 5 40.432 41.188 69.523 1 37.96 ? C13 7QX 1304 A 1 HETATM 11 C C14 7QX . . . E 5 40.344 39.654 69.654 1 39.13 ? C14 7QX 1304 A 1 HETATM 12 C C17 7QX . . . E 5 41.192 41.585 68.251 1 40.59 ? C17 7QX 1304 A 1 HETATM 13 N N03 7QX . . . E 5 36.106 43.514 70.477 1 40.55 ? N03 7QX 1304 A 1 HETATM 14 N N10 7QX . . . E 5 38.747 42.653 71.61 1 34.12 ? N10 7QX 1304 A 1 HETATM 15 O O01 7QX . . . E 5 37.246 43.907 68.493 1 41.18 ? O01 7QX 1304 A 1 HETATM 16 O O15 7QX . . . E 5 41.627 39.107 69.552 1 56.83 ? O15 7QX 1304 A 1 HETATM 17 O O16 7QX . . . E 5 41.052 41.757 70.644 1 31.7 ? O16 7QX 1304 A 1 HETATM 18 O O18 7QX . . . E 5 37.662 42.449 73.635 1 37.34 ? O18 7QX 1304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #