data_7V36 # _model_server_result.job_id ZARVOQIWc5GRvlqszS6LPA _model_server_result.datetime_utc '2024-11-25 18:40:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7V36 # _exptl.entry_id 7V36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7V36 _cell.length_a 100.905 _cell.length_b 100.905 _cell.length_c 132.771 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 198 A HIS 198 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OD1 ASP 200 A ASP 200 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 C O1 AKG . A AKG 402 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc5 C O5 AKG . A AKG 402 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 D FE FE2 . A FE2 403 1_555 J O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 40 n n C1 O2 AKG sing 41 n n C1 C2 AKG sing 42 n n O2 HO2 AKG sing 43 n n C2 O5 AKG doub 44 n n C2 C3 AKG sing 45 n n C3 C4 AKG sing 46 n n C3 H31 AKG sing 47 n n C3 H32 AKG sing 48 n n C4 C5 AKG sing 49 n n C4 H41 AKG sing 50 n n C4 H42 AKG sing 51 n n C5 O3 AKG doub 52 n n C5 O4 AKG sing 53 n n O4 HO4 AKG sing 54 n n # _atom_sites.entry_id 7V36 _atom_sites.fract_transf_matrix[1][1] 0.00991 _atom_sites.fract_transf_matrix[1][2] 0.005722 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5P0 A 1 401 1 5P0 273 . C 3 AKG A 1 402 1301 AKG AKG . D 4 FE2 A 1 403 1401 FE2 FE2 . E 5 GOL A 1 404 1 GOL GOL . F 5 GOL A 1 405 3 GOL GOL . G 5 GOL A 1 406 4 GOL GOL . H 6 CL A 1 407 1 CL CL . I 6 CL A 1 408 2 CL CL . J 7 HOH A 1 501 177 HOH HOH . J 7 HOH A 2 502 152 HOH HOH . J 7 HOH A 3 503 196 HOH HOH . J 7 HOH A 4 504 137 HOH HOH . J 7 HOH A 5 505 60 HOH HOH . J 7 HOH A 6 506 190 HOH HOH . J 7 HOH A 7 507 85 HOH HOH . J 7 HOH A 8 508 51 HOH HOH . J 7 HOH A 9 509 175 HOH HOH . J 7 HOH A 10 510 145 HOH HOH . J 7 HOH A 11 511 188 HOH HOH . J 7 HOH A 12 512 46 HOH HOH . J 7 HOH A 13 513 66 HOH HOH . J 7 HOH A 14 514 81 HOH HOH . J 7 HOH A 15 515 100 HOH HOH . J 7 HOH A 16 516 122 HOH HOH . J 7 HOH A 17 517 119 HOH HOH . J 7 HOH A 18 518 52 HOH HOH . J 7 HOH A 19 519 158 HOH HOH . J 7 HOH A 20 520 174 HOH HOH . J 7 HOH A 21 521 106 HOH HOH . J 7 HOH A 22 522 71 HOH HOH . J 7 HOH A 23 523 138 HOH HOH . J 7 HOH A 24 524 48 HOH HOH . J 7 HOH A 25 525 39 HOH HOH . J 7 HOH A 26 526 41 HOH HOH . J 7 HOH A 27 527 72 HOH HOH . J 7 HOH A 28 528 4 HOH HOH . J 7 HOH A 29 529 12 HOH HOH . J 7 HOH A 30 530 84 HOH HOH . J 7 HOH A 31 531 88 HOH HOH . J 7 HOH A 32 532 176 HOH HOH . J 7 HOH A 33 533 143 HOH HOH . J 7 HOH A 34 534 9 HOH HOH . J 7 HOH A 35 535 56 HOH HOH . J 7 HOH A 36 536 123 HOH HOH . J 7 HOH A 37 537 1 HOH HOH . J 7 HOH A 38 538 36 HOH HOH . J 7 HOH A 39 539 3 HOH HOH . J 7 HOH A 40 540 77 HOH HOH . J 7 HOH A 41 541 7 HOH HOH . J 7 HOH A 42 542 110 HOH HOH . J 7 HOH A 43 543 6 HOH HOH . J 7 HOH A 44 544 62 HOH HOH . J 7 HOH A 45 545 69 HOH HOH . J 7 HOH A 46 546 98 HOH HOH . J 7 HOH A 47 547 38 HOH HOH . J 7 HOH A 48 548 40 HOH HOH . J 7 HOH A 49 549 29 HOH HOH . J 7 HOH A 50 550 35 HOH HOH . J 7 HOH A 51 551 61 HOH HOH . J 7 HOH A 52 552 107 HOH HOH . J 7 HOH A 53 553 144 HOH HOH . J 7 HOH A 54 554 50 HOH HOH . J 7 HOH A 55 555 102 HOH HOH . J 7 HOH A 56 556 78 HOH HOH . J 7 HOH A 57 557 25 HOH HOH . J 7 HOH A 58 558 10 HOH HOH . J 7 HOH A 59 559 26 HOH HOH . J 7 HOH A 60 560 127 HOH HOH . J 7 HOH A 61 561 139 HOH HOH . J 7 HOH A 62 562 2 HOH HOH . J 7 HOH A 63 563 16 HOH HOH . J 7 HOH A 64 564 92 HOH HOH . J 7 HOH A 65 565 105 HOH HOH . J 7 HOH A 66 566 132 HOH HOH . J 7 HOH A 67 567 33 HOH HOH . J 7 HOH A 68 568 20 HOH HOH . J 7 HOH A 69 569 13 HOH HOH . J 7 HOH A 70 570 43 HOH HOH . J 7 HOH A 71 571 187 HOH HOH . J 7 HOH A 72 572 14 HOH HOH . J 7 HOH A 73 573 42 HOH HOH . J 7 HOH A 74 574 22 HOH HOH . J 7 HOH A 75 575 30 HOH HOH . J 7 HOH A 76 576 58 HOH HOH . J 7 HOH A 77 577 65 HOH HOH . J 7 HOH A 78 578 68 HOH HOH . J 7 HOH A 79 579 53 HOH HOH . J 7 HOH A 80 580 76 HOH HOH . J 7 HOH A 81 581 93 HOH HOH . J 7 HOH A 82 582 80 HOH HOH . J 7 HOH A 83 583 47 HOH HOH . J 7 HOH A 84 584 118 HOH HOH . J 7 HOH A 85 585 97 HOH HOH . J 7 HOH A 86 586 54 HOH HOH . J 7 HOH A 87 587 8 HOH HOH . J 7 HOH A 88 588 45 HOH HOH . J 7 HOH A 89 589 44 HOH HOH . J 7 HOH A 90 590 94 HOH HOH . J 7 HOH A 91 591 108 HOH HOH . J 7 HOH A 92 592 11 HOH HOH . J 7 HOH A 93 593 116 HOH HOH . J 7 HOH A 94 594 173 HOH HOH . J 7 HOH A 95 595 183 HOH HOH . J 7 HOH A 96 596 79 HOH HOH . J 7 HOH A 97 597 57 HOH HOH . J 7 HOH A 98 598 5 HOH HOH . J 7 HOH A 99 599 99 HOH HOH . J 7 HOH A 100 600 115 HOH HOH . J 7 HOH A 101 601 32 HOH HOH . J 7 HOH A 102 602 113 HOH HOH . J 7 HOH A 103 603 24 HOH HOH . J 7 HOH A 104 604 18 HOH HOH . J 7 HOH A 105 605 189 HOH HOH . J 7 HOH A 106 606 96 HOH HOH . J 7 HOH A 107 607 135 HOH HOH . J 7 HOH A 108 608 184 HOH HOH . J 7 HOH A 109 609 19 HOH HOH . J 7 HOH A 110 610 70 HOH HOH . J 7 HOH A 111 611 89 HOH HOH . J 7 HOH A 112 612 87 HOH HOH . J 7 HOH A 113 613 23 HOH HOH . J 7 HOH A 114 614 111 HOH HOH . J 7 HOH A 115 615 15 HOH HOH . J 7 HOH A 116 616 147 HOH HOH . J 7 HOH A 117 617 117 HOH HOH . J 7 HOH A 118 618 55 HOH HOH . J 7 HOH A 119 619 37 HOH HOH . J 7 HOH A 120 620 165 HOH HOH . J 7 HOH A 121 621 133 HOH HOH . J 7 HOH A 122 622 63 HOH HOH . J 7 HOH A 123 623 64 HOH HOH . J 7 HOH A 124 624 103 HOH HOH . J 7 HOH A 125 625 114 HOH HOH . J 7 HOH A 126 626 153 HOH HOH . J 7 HOH A 127 627 75 HOH HOH . J 7 HOH A 128 628 82 HOH HOH . J 7 HOH A 129 629 185 HOH HOH . J 7 HOH A 130 630 67 HOH HOH . J 7 HOH A 131 631 59 HOH HOH . J 7 HOH A 132 632 134 HOH HOH . J 7 HOH A 133 633 151 HOH HOH . J 7 HOH A 134 634 49 HOH HOH . J 7 HOH A 135 635 21 HOH HOH . J 7 HOH A 136 636 193 HOH HOH . J 7 HOH A 137 637 197 HOH HOH . J 7 HOH A 138 638 156 HOH HOH . J 7 HOH A 139 639 101 HOH HOH . J 7 HOH A 140 640 162 HOH HOH . J 7 HOH A 141 641 74 HOH HOH . J 7 HOH A 142 642 178 HOH HOH . J 7 HOH A 143 643 179 HOH HOH . J 7 HOH A 144 644 142 HOH HOH . J 7 HOH A 145 645 83 HOH HOH . J 7 HOH A 146 646 90 HOH HOH . J 7 HOH A 147 647 181 HOH HOH . J 7 HOH A 148 648 17 HOH HOH . J 7 HOH A 149 649 28 HOH HOH . J 7 HOH A 150 650 141 HOH HOH . J 7 HOH A 151 651 31 HOH HOH . J 7 HOH A 152 652 136 HOH HOH . J 7 HOH A 153 653 159 HOH HOH . J 7 HOH A 154 654 148 HOH HOH . J 7 HOH A 155 655 131 HOH HOH . J 7 HOH A 156 656 124 HOH HOH . J 7 HOH A 157 657 121 HOH HOH . J 7 HOH A 158 658 73 HOH HOH . J 7 HOH A 159 659 27 HOH HOH . J 7 HOH A 160 660 166 HOH HOH . J 7 HOH A 161 661 194 HOH HOH . J 7 HOH A 162 662 168 HOH HOH . J 7 HOH A 163 663 86 HOH HOH . J 7 HOH A 164 664 120 HOH HOH . J 7 HOH A 165 665 186 HOH HOH . J 7 HOH A 166 666 200 HOH HOH . J 7 HOH A 167 667 146 HOH HOH . J 7 HOH A 168 668 160 HOH HOH . J 7 HOH A 169 669 157 HOH HOH . J 7 HOH A 170 670 140 HOH HOH . J 7 HOH A 171 671 199 HOH HOH . J 7 HOH A 172 672 172 HOH HOH . J 7 HOH A 173 673 109 HOH HOH . J 7 HOH A 174 674 161 HOH HOH . J 7 HOH A 175 675 169 HOH HOH . J 7 HOH A 176 676 126 HOH HOH . J 7 HOH A 177 677 128 HOH HOH . J 7 HOH A 178 678 104 HOH HOH . J 7 HOH A 179 679 170 HOH HOH . J 7 HOH A 180 680 192 HOH HOH . J 7 HOH A 181 681 130 HOH HOH . J 7 HOH A 182 682 201 HOH HOH . J 7 HOH A 183 683 125 HOH HOH . J 7 HOH A 184 684 167 HOH HOH . J 7 HOH A 185 685 95 HOH HOH . J 7 HOH A 186 686 34 HOH HOH . J 7 HOH A 187 687 198 HOH HOH . J 7 HOH A 188 688 164 HOH HOH . J 7 HOH A 189 689 163 HOH HOH . J 7 HOH A 190 690 191 HOH HOH . J 7 HOH A 191 691 129 HOH HOH . J 7 HOH A 192 692 171 HOH HOH . J 7 HOH A 193 693 154 HOH HOH . J 7 HOH A 194 694 91 HOH HOH . J 7 HOH A 195 695 112 HOH HOH . J 7 HOH A 196 696 149 HOH HOH . J 7 HOH A 197 697 182 HOH HOH . J 7 HOH A 198 698 180 HOH HOH . J 7 HOH A 199 699 195 HOH HOH . J 7 HOH A 200 700 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . C 3 43.015 44.46 72.009 1 15.79 ? C1 AKG 402 A 1 HETATM 2 O O1 AKG . . . C 3 41.969 44.705 71.384 1 20.28 ? O1 AKG 402 A 1 HETATM 3 O O2 AKG . . . C 3 43.054 43.527 72.829 1 22.09 ? O2 AKG 402 A 1 HETATM 4 C C2 AKG . . . C 3 44.212 45.262 71.742 1 21.11 ? C2 AKG 402 A 1 HETATM 5 O O5 AKG . . . C 3 44.246 45.991 70.764 1 20.22 ? O5 AKG 402 A 1 HETATM 6 C C3 AKG . . . C 3 45.425 45.208 72.654 1 18.16 ? C3 AKG 402 A 1 HETATM 7 C C4 AKG . . . C 3 46.425 46.28 72.217 1 15.06 ? C4 AKG 402 A 1 HETATM 8 C C5 AKG . . . C 3 47.619 46.336 73.156 1 22.16 ? C5 AKG 402 A 1 HETATM 9 O O3 AKG . . . C 3 48.304 47.387 73.188 1 16.63 ? O3 AKG 402 A 1 HETATM 10 O O4 AKG . . . C 3 47.89 45.345 73.871 1 17.5 ? O4 AKG 402 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #