data_7V3N
#
_model_server_result.job_id            -UYUcXL78F_xjhbr7rjOKw 
_model_server_result.datetime_utc      '2024-10-11 08:30:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7v3n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1403}' 
#
_entry.id    7V3N 
#
_exptl.entry_id    7V3N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7V3N 
_cell.length_a            114.46 
_cell.length_b            114.46 
_cell.length_c            55.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7V3N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 198 A HIS 198 1_555 B FE FE2 . A FE2 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc2 A OD1 ASP 200 A ASP 200 1_555 B FE FE2 . A FE2 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 B FE FE2 . A FE2 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc4 B FE FE2 . A FE2 1401 1_555 D O2 AKG . A AKG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc5 B FE FE2 . A FE2 1401 1_555 D O5 AKG . A AKG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc6 B FE FE2 . A FE2 1401 1_555 F O HOH . A HOH 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 42 n n 
C1 O2 AKG sing 43 n n 
C1 C2 AKG sing 44 n n 
O2 HO2 AKG sing 45 n n 
C2 O5 AKG doub 46 n n 
C2 C3 AKG sing 47 n n 
C3 C4 AKG sing 48 n n 
C3 H31 AKG sing 49 n n 
C3 H32 AKG sing 50 n n 
C4 C5 AKG sing 51 n n 
C4 H41 AKG sing 52 n n 
C4 H42 AKG sing 53 n n 
C5 O3 AKG doub 54 n n 
C5 O4 AKG sing 55 n n 
O4 HO4 AKG sing 56 n n 
#
_atom_sites.entry_id                     7V3N 
_atom_sites.fract_transf_matrix[1][1]    0.008737 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017995 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 1401 1401 FE2 FE2 . 
C 3 5UQ A 1 1402 1 5UQ B27 . 
D 4 AKG A 1 1403 1301 AKG AKG . 
E 5 GOL A 1 1405 1 GOL GOL . 
F 6 HOH A 1 1501 127 HOH HOH . 
F 6 HOH A 2 1502 96 HOH HOH . 
F 6 HOH A 3 1503 68 HOH HOH . 
F 6 HOH A 4 1504 158 HOH HOH . 
F 6 HOH A 5 1505 1 HOH HOH . 
F 6 HOH A 6 1506 57 HOH HOH . 
F 6 HOH A 7 1507 124 HOH HOH . 
F 6 HOH A 8 1508 51 HOH HOH . 
F 6 HOH A 9 1509 42 HOH HOH . 
F 6 HOH A 10 1510 49 HOH HOH . 
F 6 HOH A 11 1511 178 HOH HOH . 
F 6 HOH A 12 1512 98 HOH HOH . 
F 6 HOH A 13 1513 159 HOH HOH . 
F 6 HOH A 14 1514 107 HOH HOH . 
F 6 HOH A 15 1515 180 HOH HOH . 
F 6 HOH A 16 1516 66 HOH HOH . 
F 6 HOH A 17 1517 13 HOH HOH . 
F 6 HOH A 18 1518 139 HOH HOH . 
F 6 HOH A 19 1519 89 HOH HOH . 
F 6 HOH A 20 1520 34 HOH HOH . 
F 6 HOH A 21 1521 72 HOH HOH . 
F 6 HOH A 22 1522 133 HOH HOH . 
F 6 HOH A 23 1523 37 HOH HOH . 
F 6 HOH A 24 1524 38 HOH HOH . 
F 6 HOH A 25 1525 129 HOH HOH . 
F 6 HOH A 26 1526 151 HOH HOH . 
F 6 HOH A 27 1527 15 HOH HOH . 
F 6 HOH A 28 1528 4 HOH HOH . 
F 6 HOH A 29 1529 56 HOH HOH . 
F 6 HOH A 30 1530 43 HOH HOH . 
F 6 HOH A 31 1531 164 HOH HOH . 
F 6 HOH A 32 1532 148 HOH HOH . 
F 6 HOH A 33 1533 47 HOH HOH . 
F 6 HOH A 34 1534 2 HOH HOH . 
F 6 HOH A 35 1535 121 HOH HOH . 
F 6 HOH A 36 1536 86 HOH HOH . 
F 6 HOH A 37 1537 54 HOH HOH . 
F 6 HOH A 38 1538 17 HOH HOH . 
F 6 HOH A 39 1539 22 HOH HOH . 
F 6 HOH A 40 1540 110 HOH HOH . 
F 6 HOH A 41 1541 19 HOH HOH . 
F 6 HOH A 42 1542 30 HOH HOH . 
F 6 HOH A 43 1543 39 HOH HOH . 
F 6 HOH A 44 1544 11 HOH HOH . 
F 6 HOH A 45 1545 114 HOH HOH . 
F 6 HOH A 46 1546 41 HOH HOH . 
F 6 HOH A 47 1547 102 HOH HOH . 
F 6 HOH A 48 1548 70 HOH HOH . 
F 6 HOH A 49 1549 27 HOH HOH . 
F 6 HOH A 50 1550 177 HOH HOH . 
F 6 HOH A 51 1551 7 HOH HOH . 
F 6 HOH A 52 1552 80 HOH HOH . 
F 6 HOH A 53 1553 76 HOH HOH . 
F 6 HOH A 54 1554 67 HOH HOH . 
F 6 HOH A 55 1555 143 HOH HOH . 
F 6 HOH A 56 1556 53 HOH HOH . 
F 6 HOH A 57 1557 122 HOH HOH . 
F 6 HOH A 58 1558 8 HOH HOH . 
F 6 HOH A 59 1559 16 HOH HOH . 
F 6 HOH A 60 1560 120 HOH HOH . 
F 6 HOH A 61 1561 28 HOH HOH . 
F 6 HOH A 62 1562 175 HOH HOH . 
F 6 HOH A 63 1563 116 HOH HOH . 
F 6 HOH A 64 1564 91 HOH HOH . 
F 6 HOH A 65 1565 81 HOH HOH . 
F 6 HOH A 66 1566 140 HOH HOH . 
F 6 HOH A 67 1567 79 HOH HOH . 
F 6 HOH A 68 1568 44 HOH HOH . 
F 6 HOH A 69 1569 75 HOH HOH . 
F 6 HOH A 70 1570 108 HOH HOH . 
F 6 HOH A 71 1571 64 HOH HOH . 
F 6 HOH A 72 1572 155 HOH HOH . 
F 6 HOH A 73 1573 71 HOH HOH . 
F 6 HOH A 74 1574 40 HOH HOH . 
F 6 HOH A 75 1575 83 HOH HOH . 
F 6 HOH A 76 1576 176 HOH HOH . 
F 6 HOH A 77 1577 48 HOH HOH . 
F 6 HOH A 78 1578 32 HOH HOH . 
F 6 HOH A 79 1579 31 HOH HOH . 
F 6 HOH A 80 1580 170 HOH HOH . 
F 6 HOH A 81 1581 149 HOH HOH . 
F 6 HOH A 82 1582 52 HOH HOH . 
F 6 HOH A 83 1583 6 HOH HOH . 
F 6 HOH A 84 1584 10 HOH HOH . 
F 6 HOH A 85 1585 93 HOH HOH . 
F 6 HOH A 86 1586 82 HOH HOH . 
F 6 HOH A 87 1587 20 HOH HOH . 
F 6 HOH A 88 1588 58 HOH HOH . 
F 6 HOH A 89 1589 134 HOH HOH . 
F 6 HOH A 90 1590 5 HOH HOH . 
F 6 HOH A 91 1591 78 HOH HOH . 
F 6 HOH A 92 1592 92 HOH HOH . 
F 6 HOH A 93 1593 26 HOH HOH . 
F 6 HOH A 94 1594 106 HOH HOH . 
F 6 HOH A 95 1595 94 HOH HOH . 
F 6 HOH A 96 1596 142 HOH HOH . 
F 6 HOH A 97 1597 74 HOH HOH . 
F 6 HOH A 98 1598 18 HOH HOH . 
F 6 HOH A 99 1599 63 HOH HOH . 
F 6 HOH A 100 1600 103 HOH HOH . 
F 6 HOH A 101 1601 185 HOH HOH . 
F 6 HOH A 102 1602 24 HOH HOH . 
F 6 HOH A 103 1603 136 HOH HOH . 
F 6 HOH A 104 1604 147 HOH HOH . 
F 6 HOH A 105 1605 21 HOH HOH . 
F 6 HOH A 106 1606 84 HOH HOH . 
F 6 HOH A 107 1607 12 HOH HOH . 
F 6 HOH A 108 1608 90 HOH HOH . 
F 6 HOH A 109 1609 138 HOH HOH . 
F 6 HOH A 110 1610 156 HOH HOH . 
F 6 HOH A 111 1611 105 HOH HOH . 
F 6 HOH A 112 1612 33 HOH HOH . 
F 6 HOH A 113 1613 97 HOH HOH . 
F 6 HOH A 114 1614 65 HOH HOH . 
F 6 HOH A 115 1615 132 HOH HOH . 
F 6 HOH A 116 1616 146 HOH HOH . 
F 6 HOH A 117 1617 152 HOH HOH . 
F 6 HOH A 118 1618 181 HOH HOH . 
F 6 HOH A 119 1619 135 HOH HOH . 
F 6 HOH A 120 1620 109 HOH HOH . 
F 6 HOH A 121 1621 23 HOH HOH . 
F 6 HOH A 122 1622 130 HOH HOH . 
F 6 HOH A 123 1623 113 HOH HOH . 
F 6 HOH A 124 1624 9 HOH HOH . 
F 6 HOH A 125 1625 141 HOH HOH . 
F 6 HOH A 126 1626 115 HOH HOH . 
F 6 HOH A 127 1627 62 HOH HOH . 
F 6 HOH A 128 1628 61 HOH HOH . 
F 6 HOH A 129 1629 171 HOH HOH . 
F 6 HOH A 130 1630 153 HOH HOH . 
F 6 HOH A 131 1631 77 HOH HOH . 
F 6 HOH A 132 1632 160 HOH HOH . 
F 6 HOH A 133 1633 172 HOH HOH . 
F 6 HOH A 134 1634 99 HOH HOH . 
F 6 HOH A 135 1635 55 HOH HOH . 
F 6 HOH A 136 1636 118 HOH HOH . 
F 6 HOH A 137 1637 101 HOH HOH . 
F 6 HOH A 138 1638 59 HOH HOH . 
F 6 HOH A 139 1639 161 HOH HOH . 
F 6 HOH A 140 1640 125 HOH HOH . 
F 6 HOH A 141 1641 3 HOH HOH . 
F 6 HOH A 142 1642 25 HOH HOH . 
F 6 HOH A 143 1643 85 HOH HOH . 
F 6 HOH A 144 1644 73 HOH HOH . 
F 6 HOH A 145 1645 46 HOH HOH . 
F 6 HOH A 146 1646 174 HOH HOH . 
F 6 HOH A 147 1647 144 HOH HOH . 
F 6 HOH A 148 1648 167 HOH HOH . 
F 6 HOH A 149 1649 50 HOH HOH . 
F 6 HOH A 150 1650 100 HOH HOH . 
F 6 HOH A 151 1651 112 HOH HOH . 
F 6 HOH A 152 1652 137 HOH HOH . 
F 6 HOH A 153 1653 123 HOH HOH . 
F 6 HOH A 154 1654 60 HOH HOH . 
F 6 HOH A 155 1655 29 HOH HOH . 
F 6 HOH A 156 1656 168 HOH HOH . 
F 6 HOH A 157 1657 150 HOH HOH . 
F 6 HOH A 158 1658 36 HOH HOH . 
F 6 HOH A 159 1659 163 HOH HOH . 
F 6 HOH A 160 1660 111 HOH HOH . 
F 6 HOH A 161 1661 169 HOH HOH . 
F 6 HOH A 162 1662 35 HOH HOH . 
F 6 HOH A 163 1663 117 HOH HOH . 
F 6 HOH A 164 1664 131 HOH HOH . 
F 6 HOH A 165 1665 95 HOH HOH . 
F 6 HOH A 166 1666 104 HOH HOH . 
F 6 HOH A 167 1667 182 HOH HOH . 
F 6 HOH A 168 1668 154 HOH HOH . 
F 6 HOH A 169 1669 184 HOH HOH . 
F 6 HOH A 170 1670 183 HOH HOH . 
F 6 HOH A 171 1671 145 HOH HOH . 
F 6 HOH A 172 1672 45 HOH HOH . 
F 6 HOH A 173 1673 157 HOH HOH . 
F 6 HOH A 174 1674 128 HOH HOH . 
F 6 HOH A 175 1675 119 HOH HOH . 
F 6 HOH A 176 1676 166 HOH HOH . 
F 6 HOH A 177 1677 87 HOH HOH . 
F 6 HOH A 178 1678 69 HOH HOH . 
F 6 HOH A 179 1679 165 HOH HOH . 
F 6 HOH A 180 1680 173 HOH HOH . 
F 6 HOH A 181 1681 162 HOH HOH . 
F 6 HOH A 182 1682 126 HOH HOH . 
F 6 HOH A 183 1683 88 HOH HOH . 
F 6 HOH A 184 1684 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . D 4 128.421 80.777 -3.879 1 25.6 ? C1 AKG 1403 A 1 
HETATM 2 O O1 AKG . . . D 4 129.536 80.243 -3.688 1 26.92 ? O1 AKG 1403 A 1 
HETATM 3 O O2 AKG . . . D 4 127.437 80.461 -3.182 1 28.47 ? O2 AKG 1403 A 1 
HETATM 4 C C2 AKG . . . D 4 128.289 81.782 -4.929 1 30.73 ? C2 AKG 1403 A 1 
HETATM 5 O O5 AKG . . . D 4 127.199 82.151 -5.343 1 24.39 ? O5 AKG 1403 A 1 
HETATM 6 C C3 AKG . . . D 4 129.543 82.37 -5.528 1 22.87 ? C3 AKG 1403 A 1 
HETATM 7 C C4 AKG . . . D 4 129.141 83.324 -6.634 1 22.98 ? C4 AKG 1403 A 1 
HETATM 8 C C5 AKG . . . D 4 130.357 83.922 -7.299 1 25.16 ? C5 AKG 1403 A 1 
HETATM 9 O O3 AKG . . . D 4 130.271 85.096 -7.72 1 25.99 ? O3 AKG 1403 A 1 
HETATM 10 O O4 AKG . . . D 4 131.383 83.222 -7.444 1 25.05 ? O4 AKG 1403 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#