data_7V3O # _model_server_result.job_id HWnHwYw2ul4zN2UXr8uZMg _model_server_result.datetime_utc '2024-11-22 16:31:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7V3O # _exptl.entry_id 7V3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7V3O _cell.length_a 101.62 _cell.length_b 101.62 _cell.length_c 130.57 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 239 A SER 239 1_555 A N MSE 240 A MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 240 A MSE 240 1_555 A N GLU 241 A GLU 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ILE 254 A ILE 254 1_555 A N MSE 255 A MSE 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 255 A MSE 255 1_555 A N HIS 256 A HIS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A NE2 HIS 198 A HIS 198 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 A OD1 ASP 200 A ASP 200 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc4 C O1 AKG . A AKG 402 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 C O5 AKG . A AKG 402 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc6 D FE FE2 . A FE2 403 1_555 F O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7V3O _atom_sites.fract_transf_matrix[1][1] 0.009841 _atom_sites.fract_transf_matrix[1][2] 0.005681 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 1 CL CL . C 3 AKG A 1 402 1301 AKG AKG . D 4 FE2 A 1 403 1401 FE2 FE2 . E 2 CL A 1 404 1 CL CL . F 5 HOH A 1 501 113 HOH HOH . F 5 HOH A 2 502 112 HOH HOH . F 5 HOH A 3 503 36 HOH HOH . F 5 HOH A 4 504 137 HOH HOH . F 5 HOH A 5 505 17 HOH HOH . F 5 HOH A 6 506 21 HOH HOH . F 5 HOH A 7 507 9 HOH HOH . F 5 HOH A 8 508 22 HOH HOH . F 5 HOH A 9 509 57 HOH HOH . F 5 HOH A 10 510 53 HOH HOH . F 5 HOH A 11 511 48 HOH HOH . F 5 HOH A 12 512 74 HOH HOH . F 5 HOH A 13 513 71 HOH HOH . F 5 HOH A 14 514 134 HOH HOH . F 5 HOH A 15 515 149 HOH HOH . F 5 HOH A 16 516 156 HOH HOH . F 5 HOH A 17 517 106 HOH HOH . F 5 HOH A 18 518 62 HOH HOH . F 5 HOH A 19 519 31 HOH HOH . F 5 HOH A 20 520 82 HOH HOH . F 5 HOH A 21 521 26 HOH HOH . F 5 HOH A 22 522 61 HOH HOH . F 5 HOH A 23 523 19 HOH HOH . F 5 HOH A 24 524 8 HOH HOH . F 5 HOH A 25 525 2 HOH HOH . F 5 HOH A 26 526 105 HOH HOH . F 5 HOH A 27 527 118 HOH HOH . F 5 HOH A 28 528 145 HOH HOH . F 5 HOH A 29 529 170 HOH HOH . F 5 HOH A 30 530 6 HOH HOH . F 5 HOH A 31 531 161 HOH HOH . F 5 HOH A 32 532 67 HOH HOH . F 5 HOH A 33 533 39 HOH HOH . F 5 HOH A 34 534 87 HOH HOH . F 5 HOH A 35 535 100 HOH HOH . F 5 HOH A 36 536 111 HOH HOH . F 5 HOH A 37 537 20 HOH HOH . F 5 HOH A 38 538 59 HOH HOH . F 5 HOH A 39 539 133 HOH HOH . F 5 HOH A 40 540 38 HOH HOH . F 5 HOH A 41 541 56 HOH HOH . F 5 HOH A 42 542 27 HOH HOH . F 5 HOH A 43 543 76 HOH HOH . F 5 HOH A 44 544 93 HOH HOH . F 5 HOH A 45 545 144 HOH HOH . F 5 HOH A 46 546 15 HOH HOH . F 5 HOH A 47 547 52 HOH HOH . F 5 HOH A 48 548 30 HOH HOH . F 5 HOH A 49 549 12 HOH HOH . F 5 HOH A 50 550 104 HOH HOH . F 5 HOH A 51 551 163 HOH HOH . F 5 HOH A 52 552 40 HOH HOH . F 5 HOH A 53 553 13 HOH HOH . F 5 HOH A 54 554 107 HOH HOH . F 5 HOH A 55 555 54 HOH HOH . F 5 HOH A 56 556 155 HOH HOH . F 5 HOH A 57 557 138 HOH HOH . F 5 HOH A 58 558 16 HOH HOH . F 5 HOH A 59 559 18 HOH HOH . F 5 HOH A 60 560 166 HOH HOH . F 5 HOH A 61 561 11 HOH HOH . F 5 HOH A 62 562 123 HOH HOH . F 5 HOH A 63 563 78 HOH HOH . F 5 HOH A 64 564 58 HOH HOH . F 5 HOH A 65 565 10 HOH HOH . F 5 HOH A 66 566 4 HOH HOH . F 5 HOH A 67 567 5 HOH HOH . F 5 HOH A 68 568 47 HOH HOH . F 5 HOH A 69 569 72 HOH HOH . F 5 HOH A 70 570 41 HOH HOH . F 5 HOH A 71 571 73 HOH HOH . F 5 HOH A 72 572 44 HOH HOH . F 5 HOH A 73 573 119 HOH HOH . F 5 HOH A 74 574 146 HOH HOH . F 5 HOH A 75 575 7 HOH HOH . F 5 HOH A 76 576 110 HOH HOH . F 5 HOH A 77 577 64 HOH HOH . F 5 HOH A 78 578 168 HOH HOH . F 5 HOH A 79 579 24 HOH HOH . F 5 HOH A 80 580 14 HOH HOH . F 5 HOH A 81 581 79 HOH HOH . F 5 HOH A 82 582 55 HOH HOH . F 5 HOH A 83 583 32 HOH HOH . F 5 HOH A 84 584 25 HOH HOH . F 5 HOH A 85 585 128 HOH HOH . F 5 HOH A 86 586 42 HOH HOH . F 5 HOH A 87 587 122 HOH HOH . F 5 HOH A 88 588 80 HOH HOH . F 5 HOH A 89 589 152 HOH HOH . F 5 HOH A 90 590 43 HOH HOH . F 5 HOH A 91 591 50 HOH HOH . F 5 HOH A 92 592 51 HOH HOH . F 5 HOH A 93 593 164 HOH HOH . F 5 HOH A 94 594 69 HOH HOH . F 5 HOH A 95 595 63 HOH HOH . F 5 HOH A 96 596 143 HOH HOH . F 5 HOH A 97 597 153 HOH HOH . F 5 HOH A 98 598 90 HOH HOH . F 5 HOH A 99 599 94 HOH HOH . F 5 HOH A 100 600 109 HOH HOH . F 5 HOH A 101 601 92 HOH HOH . F 5 HOH A 102 602 33 HOH HOH . F 5 HOH A 103 603 101 HOH HOH . F 5 HOH A 104 604 28 HOH HOH . F 5 HOH A 105 605 88 HOH HOH . F 5 HOH A 106 606 130 HOH HOH . F 5 HOH A 107 607 136 HOH HOH . F 5 HOH A 108 608 86 HOH HOH . F 5 HOH A 109 609 65 HOH HOH . F 5 HOH A 110 610 135 HOH HOH . F 5 HOH A 111 611 23 HOH HOH . F 5 HOH A 112 612 157 HOH HOH . F 5 HOH A 113 613 103 HOH HOH . F 5 HOH A 114 614 75 HOH HOH . F 5 HOH A 115 615 120 HOH HOH . F 5 HOH A 116 616 29 HOH HOH . F 5 HOH A 117 617 159 HOH HOH . F 5 HOH A 118 618 46 HOH HOH . F 5 HOH A 119 619 34 HOH HOH . F 5 HOH A 120 620 148 HOH HOH . F 5 HOH A 121 621 96 HOH HOH . F 5 HOH A 122 622 154 HOH HOH . F 5 HOH A 123 623 131 HOH HOH . F 5 HOH A 124 624 81 HOH HOH . F 5 HOH A 125 625 102 HOH HOH . F 5 HOH A 126 626 121 HOH HOH . F 5 HOH A 127 627 140 HOH HOH . F 5 HOH A 128 628 158 HOH HOH . F 5 HOH A 129 629 160 HOH HOH . F 5 HOH A 130 630 89 HOH HOH . F 5 HOH A 131 631 85 HOH HOH . F 5 HOH A 132 632 165 HOH HOH . F 5 HOH A 133 633 151 HOH HOH . F 5 HOH A 134 634 125 HOH HOH . F 5 HOH A 135 635 167 HOH HOH . F 5 HOH A 136 636 83 HOH HOH . F 5 HOH A 137 637 150 HOH HOH . F 5 HOH A 138 638 116 HOH HOH . F 5 HOH A 139 639 139 HOH HOH . F 5 HOH A 140 640 91 HOH HOH . F 5 HOH A 141 641 35 HOH HOH . F 5 HOH A 142 642 126 HOH HOH . F 5 HOH A 143 643 147 HOH HOH . F 5 HOH A 144 644 95 HOH HOH . F 5 HOH A 145 645 108 HOH HOH . F 5 HOH A 146 646 117 HOH HOH . F 5 HOH A 147 647 115 HOH HOH . F 5 HOH A 148 648 169 HOH HOH . F 5 HOH A 149 649 129 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 42.498 _atom_site.Cartn_y 46.247 _atom_site.Cartn_z 68.131 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 106 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #