data_7V4S # _model_server_result.job_id CpobtaYHt-Ez4s295qWMQQ _model_server_result.datetime_utc '2025-03-06 18:07:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 7V4S # _exptl.entry_id 7V4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7V4S _cell.length_a 42.84 _cell.length_b 42.84 _cell.length_c 139.201 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.400333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 224 n n C1 O1 MMA sing 225 n n C1 O5 MMA sing 226 n n C1 H1 MMA sing 227 n n C2 C3 MMA sing 228 n n C2 O2 MMA sing 229 n n C2 H2 MMA sing 230 n n C3 C4 MMA sing 231 n n C3 O3 MMA sing 232 n n C3 H3 MMA sing 233 n n C4 C5 MMA sing 234 n n C4 O4 MMA sing 235 n n C4 H4 MMA sing 236 n n C5 C6 MMA sing 237 n n C5 O5 MMA sing 238 n n C5 H5 MMA sing 239 n n C6 O6 MMA sing 240 n n C6 H61 MMA sing 241 n n C6 H62 MMA sing 242 n n C7 O1 MMA sing 243 n n C7 H71 MMA sing 244 n n C7 H72 MMA sing 245 n n C7 H73 MMA sing 246 n n O2 HO2 MMA sing 247 n n O3 HO3 MMA sing 248 n n O4 HO4 MMA sing 249 n n O6 HO6 MMA sing 250 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 7V4S _atom_sites.fract_transf_matrix[1][1] 0.023343 _atom_sites.fract_transf_matrix[1][2] 0.013477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMA A 1 801 801 MMA MMA . C 2 MMA A 1 802 803 MMA MMA . D 3 HOH A 1 901 68 HOH HOH . D 3 HOH A 2 902 57 HOH HOH . D 3 HOH A 3 903 145 HOH HOH . D 3 HOH A 4 904 192 HOH HOH . D 3 HOH A 5 905 121 HOH HOH . D 3 HOH A 6 906 95 HOH HOH . D 3 HOH A 7 907 11 HOH HOH . D 3 HOH A 8 908 176 HOH HOH . D 3 HOH A 9 909 101 HOH HOH . D 3 HOH A 10 910 105 HOH HOH . D 3 HOH A 11 911 120 HOH HOH . D 3 HOH A 12 912 11 HOH HOH . D 3 HOH A 13 913 49 HOH HOH . D 3 HOH A 14 914 76 HOH HOH . D 3 HOH A 15 915 190 HOH HOH . D 3 HOH A 16 916 67 HOH HOH . D 3 HOH A 17 917 63 HOH HOH . D 3 HOH A 18 918 20 HOH HOH . D 3 HOH A 19 919 137 HOH HOH . D 3 HOH A 20 920 21 HOH HOH . D 3 HOH A 21 921 77 HOH HOH . D 3 HOH A 22 922 62 HOH HOH . D 3 HOH A 23 923 73 HOH HOH . D 3 HOH A 24 924 4 HOH HOH . D 3 HOH A 25 925 100 HOH HOH . D 3 HOH A 26 926 33 HOH HOH . D 3 HOH A 27 927 93 HOH HOH . D 3 HOH A 28 928 79 HOH HOH . D 3 HOH A 29 929 102 HOH HOH . D 3 HOH A 30 930 88 HOH HOH . D 3 HOH A 31 931 166 HOH HOH . D 3 HOH A 32 932 3 HOH HOH . D 3 HOH A 33 933 65 HOH HOH . D 3 HOH A 34 934 1 HOH HOH . D 3 HOH A 35 935 89 HOH HOH . D 3 HOH A 36 936 97 HOH HOH . D 3 HOH A 37 937 114 HOH HOH . D 3 HOH A 38 938 91 HOH HOH . D 3 HOH A 39 939 9 HOH HOH . D 3 HOH A 40 940 87 HOH HOH . D 3 HOH A 41 941 222 HOH HOH . D 3 HOH A 42 942 126 HOH HOH . D 3 HOH A 43 943 122 HOH HOH . D 3 HOH A 44 944 41 HOH HOH . D 3 HOH A 45 945 8 HOH HOH . D 3 HOH A 46 946 50 HOH HOH . D 3 HOH A 47 947 15 HOH HOH . D 3 HOH A 48 948 48 HOH HOH . D 3 HOH A 49 949 82 HOH HOH . D 3 HOH A 50 950 30 HOH HOH . D 3 HOH A 51 951 7 HOH HOH . D 3 HOH A 52 952 106 HOH HOH . D 3 HOH A 53 953 80 HOH HOH . D 3 HOH A 54 954 117 HOH HOH . D 3 HOH A 55 955 172 HOH HOH . D 3 HOH A 56 956 136 HOH HOH . D 3 HOH A 57 957 81 HOH HOH . D 3 HOH A 58 958 5 HOH HOH . D 3 HOH A 59 959 47 HOH HOH . D 3 HOH A 60 960 90 HOH HOH . D 3 HOH A 61 961 25 HOH HOH . D 3 HOH A 62 962 64 HOH HOH . D 3 HOH A 63 963 14 HOH HOH . D 3 HOH A 64 964 23 HOH HOH . D 3 HOH A 65 965 19 HOH HOH . D 3 HOH A 66 966 32 HOH HOH . D 3 HOH A 67 967 250 HOH HOH . D 3 HOH A 68 968 28 HOH HOH . D 3 HOH A 69 969 132 HOH HOH . D 3 HOH A 70 970 168 HOH HOH . D 3 HOH A 71 971 78 HOH HOH . D 3 HOH A 72 972 56 HOH HOH . D 3 HOH A 73 973 123 HOH HOH . D 3 HOH A 74 974 147 HOH HOH . D 3 HOH A 75 975 140 HOH HOH . D 3 HOH A 76 976 72 HOH HOH . D 3 HOH A 77 977 157 HOH HOH . D 3 HOH A 78 978 70 HOH HOH . D 3 HOH A 79 979 39 HOH HOH . D 3 HOH A 80 980 16 HOH HOH . D 3 HOH A 81 981 27 HOH HOH . D 3 HOH A 82 982 153 HOH HOH . D 3 HOH A 83 983 40 HOH HOH . D 3 HOH A 84 984 34 HOH HOH . D 3 HOH A 85 985 86 HOH HOH . D 3 HOH A 86 986 22 HOH HOH . D 3 HOH A 87 987 43 HOH HOH . D 3 HOH A 88 988 154 HOH HOH . D 3 HOH A 89 989 71 HOH HOH . D 3 HOH A 90 990 36 HOH HOH . D 3 HOH A 91 991 74 HOH HOH . D 3 HOH A 92 992 25 HOH HOH . D 3 HOH A 93 993 45 HOH HOH . D 3 HOH A 94 994 15 HOH HOH . D 3 HOH A 95 995 152 HOH HOH . D 3 HOH A 96 996 42 HOH HOH . D 3 HOH A 97 997 139 HOH HOH . D 3 HOH A 98 998 75 HOH HOH . D 3 HOH A 99 999 58 HOH HOH . D 3 HOH A 100 1000 218 HOH HOH . D 3 HOH A 101 1001 21 HOH HOH . D 3 HOH A 102 1002 2 HOH HOH . D 3 HOH A 103 1003 46 HOH HOH . D 3 HOH A 104 1004 98 HOH HOH . D 3 HOH A 105 1005 10 HOH HOH . D 3 HOH A 106 1006 55 HOH HOH . D 3 HOH A 107 1007 35 HOH HOH . D 3 HOH A 108 1008 85 HOH HOH . D 3 HOH A 109 1009 66 HOH HOH . D 3 HOH A 110 1010 104 HOH HOH . D 3 HOH A 111 1011 29 HOH HOH . D 3 HOH A 112 1012 130 HOH HOH . D 3 HOH A 113 1013 10 HOH HOH . D 3 HOH A 114 1014 24 HOH HOH . D 3 HOH A 115 1015 118 HOH HOH . D 3 HOH A 116 1016 61 HOH HOH . D 3 HOH A 117 1017 187 HOH HOH . D 3 HOH A 118 1018 13 HOH HOH . D 3 HOH A 119 1019 37 HOH HOH . D 3 HOH A 120 1020 30 HOH HOH . D 3 HOH A 121 1021 53 HOH HOH . D 3 HOH A 122 1022 125 HOH HOH . D 3 HOH A 123 1023 163 HOH HOH . D 3 HOH A 124 1024 217 HOH HOH . D 3 HOH A 125 1025 146 HOH HOH . D 3 HOH A 126 1026 18 HOH HOH . D 3 HOH A 127 1027 28 HOH HOH . D 3 HOH A 128 1028 128 HOH HOH . D 3 HOH A 129 1029 19 HOH HOH . D 3 HOH A 130 1030 235 HOH HOH . D 3 HOH A 131 1031 109 HOH HOH . D 3 HOH A 132 1032 3 HOH HOH . D 3 HOH A 133 1033 4 HOH HOH . D 3 HOH A 134 1034 212 HOH HOH . D 3 HOH A 135 1035 17 HOH HOH . D 3 HOH A 136 1036 184 HOH HOH . D 3 HOH A 137 1037 6 HOH HOH . D 3 HOH A 138 1038 52 HOH HOH . D 3 HOH A 139 1039 51 HOH HOH . D 3 HOH A 140 1040 165 HOH HOH . D 3 HOH A 141 1041 164 HOH HOH . D 3 HOH A 142 1042 107 HOH HOH . D 3 HOH A 143 1043 151 HOH HOH . D 3 HOH A 144 1044 110 HOH HOH . D 3 HOH A 145 1045 156 HOH HOH . D 3 HOH A 146 1046 233 HOH HOH . D 3 HOH A 147 1047 111 HOH HOH . D 3 HOH A 148 1048 248 HOH HOH . D 3 HOH A 149 1049 236 HOH HOH . D 3 HOH A 150 1050 38 HOH HOH . D 3 HOH A 151 1051 124 HOH HOH . D 3 HOH A 152 1052 162 HOH HOH . D 3 HOH A 153 1053 171 HOH HOH . D 3 HOH A 154 1054 60 HOH HOH . D 3 HOH A 155 1055 143 HOH HOH . D 3 HOH A 156 1056 234 HOH HOH . D 3 HOH A 157 1057 31 HOH HOH . D 3 HOH A 158 1058 177 HOH HOH . D 3 HOH A 159 1059 96 HOH HOH . D 3 HOH A 160 1060 244 HOH HOH . D 3 HOH A 161 1061 39 HOH HOH . D 3 HOH A 162 1062 84 HOH HOH . D 3 HOH A 163 1063 238 HOH HOH . D 3 HOH A 164 1064 169 HOH HOH . D 3 HOH A 165 1065 182 HOH HOH . D 3 HOH A 166 1066 239 HOH HOH . D 3 HOH A 167 1067 119 HOH HOH . D 3 HOH A 168 1068 211 HOH HOH . D 3 HOH A 169 1069 69 HOH HOH . D 3 HOH A 170 1070 133 HOH HOH . D 3 HOH A 171 1071 202 HOH HOH . D 3 HOH A 172 1072 113 HOH HOH . D 3 HOH A 173 1073 247 HOH HOH . D 3 HOH A 174 1074 54 HOH HOH . D 3 HOH A 175 1075 148 HOH HOH . D 3 HOH A 176 1076 232 HOH HOH . D 3 HOH A 177 1077 134 HOH HOH . D 3 HOH A 178 1078 231 HOH HOH . D 3 HOH A 179 1079 116 HOH HOH . D 3 HOH A 180 1080 237 HOH HOH . D 3 HOH A 181 1081 138 HOH HOH . D 3 HOH A 182 1082 150 HOH HOH . D 3 HOH A 183 1083 241 HOH HOH . D 3 HOH A 184 1084 160 HOH HOH . D 3 HOH A 185 1085 174 HOH HOH . D 3 HOH A 186 1086 112 HOH HOH . D 3 HOH A 187 1087 83 HOH HOH . D 3 HOH A 188 1088 92 HOH HOH . D 3 HOH A 189 1089 158 HOH HOH . D 3 HOH A 190 1090 142 HOH HOH . D 3 HOH A 191 1091 141 HOH HOH . D 3 HOH A 192 1092 159 HOH HOH . D 3 HOH A 193 1093 131 HOH HOH . D 3 HOH A 194 1094 94 HOH HOH . D 3 HOH A 195 1095 44 HOH HOH . D 3 HOH A 196 1096 180 HOH HOH . D 3 HOH A 197 1097 144 HOH HOH . D 3 HOH A 198 1098 115 HOH HOH . D 3 HOH A 199 1099 249 HOH HOH . D 3 HOH A 200 1100 230 HOH HOH . D 3 HOH A 201 1101 135 HOH HOH . D 3 HOH A 202 1102 195 HOH HOH . D 3 HOH A 203 1103 207 HOH HOH . D 3 HOH A 204 1104 103 HOH HOH . D 3 HOH A 205 1105 245 HOH HOH . D 3 HOH A 206 1106 196 HOH HOH . D 3 HOH A 207 1107 246 HOH HOH . D 3 HOH A 208 1108 59 HOH HOH . D 3 HOH A 209 1109 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . C 2 -17.963 19.864 0.263 1 15.63 ? C1 MMA 802 A 1 HETATM 2 C C2 MMA . . . C 2 -18.679 18.597 0.729 1 16.32 ? C2 MMA 802 A 1 HETATM 3 C C3 MMA . . . C 2 -19.212 18.786 2.101 1 14.56 ? C3 MMA 802 A 1 HETATM 4 C C4 MMA . . . C 2 -18.057 19.174 3.052 1 13.19 ? C4 MMA 802 A 1 HETATM 5 C C5 MMA . . . C 2 -17.401 20.451 2.554 1 12.97 ? C5 MMA 802 A 1 HETATM 6 C C6 MMA . . . C 2 -16.193 20.84 3.39 1 11.89 ? C6 MMA 802 A 1 HETATM 7 C C7 MMA . . . C 2 -18.243 22.092 -0.308 1 20.92 ? C7 MMA 802 A 1 HETATM 8 O O1 MMA . . . C 2 -18.914 20.924 0.177 1 18.73 ? O1 MMA 802 A 1 HETATM 9 O O2 MMA . . . C 2 -17.82 17.448 0.741 1 18.5 ? O2 MMA 802 A 1 HETATM 10 O O3 MMA . . . C 2 -19.746 17.512 2.519 1 17.93 ? O3 MMA 802 A 1 HETATM 11 O O4 MMA . . . C 2 -18.666 19.403 4.296 1 13.59 ? O4 MMA 802 A 1 HETATM 12 O O5 MMA . . . C 2 -16.933 20.226 1.21 1 15.11 ? O5 MMA 802 A 1 HETATM 13 O O6 MMA . . . C 2 -15.149 19.868 3.328 1 11.56 ? O6 MMA 802 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #