data_7V4X # _model_server_result.job_id BAusESeKuwePqbu61m65RQ _model_server_result.datetime_utc '2024-11-30 01:21:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7V4X # _exptl.entry_id 7V4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.64 _cell.angle_gamma 90 _cell.entry_id 7V4X _cell.length_a 52.595 _cell.length_b 52.999 _cell.length_c 100.489 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 328 n n PA O2A NAP sing 329 n n PA O5B NAP sing 330 n n PA O3 NAP sing 331 n n O2A HOA2 NAP sing 332 n n O5B C5B NAP sing 333 n n C5B C4B NAP sing 334 n n C5B H51A NAP sing 335 n n C5B H52A NAP sing 336 n n C4B O4B NAP sing 337 n n C4B C3B NAP sing 338 n n C4B H4B NAP sing 339 n n O4B C1B NAP sing 340 n n C3B O3B NAP sing 341 n n C3B C2B NAP sing 342 n n C3B H3B NAP sing 343 n n O3B HO3A NAP sing 344 n n C2B O2B NAP sing 345 n n C2B C1B NAP sing 346 n n C2B H2B NAP sing 347 n n O2B P2B NAP sing 348 n n C1B N9A NAP sing 349 n n C1B H1B NAP sing 350 n n N9A C8A NAP sing 351 n y N9A C4A NAP sing 352 n y C8A N7A NAP doub 353 n y C8A H8A NAP sing 354 n n N7A C5A NAP sing 355 n y C5A C6A NAP sing 356 n y C5A C4A NAP doub 357 n y C6A N6A NAP sing 358 n n C6A N1A NAP doub 359 n y N6A H61A NAP sing 360 n n N6A H62A NAP sing 361 n n N1A C2A NAP sing 362 n y C2A N3A NAP doub 363 n y C2A H2A NAP sing 364 n n N3A C4A NAP sing 365 n y O3 PN NAP sing 366 n n PN O1N NAP doub 367 n n PN O2N NAP sing 368 n n PN O5D NAP sing 369 n n O5D C5D NAP sing 370 n n C5D C4D NAP sing 371 n n C5D H51N NAP sing 372 n n C5D H52N NAP sing 373 n n C4D O4D NAP sing 374 n n C4D C3D NAP sing 375 n n C4D H4D NAP sing 376 n n O4D C1D NAP sing 377 n n C3D O3D NAP sing 378 n n C3D C2D NAP sing 379 n n C3D H3D NAP sing 380 n n O3D HO3N NAP sing 381 n n C2D O2D NAP sing 382 n n C2D C1D NAP sing 383 n n C2D H2D NAP sing 384 n n O2D HO2N NAP sing 385 n n C1D N1N NAP sing 386 n n C1D H1D NAP sing 387 n n N1N C2N NAP sing 388 n y N1N C6N NAP doub 389 n y C2N C3N NAP doub 390 n y C2N H2N NAP sing 391 n n C3N C7N NAP sing 392 n n C3N C4N NAP sing 393 n y C7N O7N NAP doub 394 n n C7N N7N NAP sing 395 n n N7N H71N NAP sing 396 n n N7N H72N NAP sing 397 n n C4N C5N NAP doub 398 n y C4N H4N NAP sing 399 n n C5N C6N NAP sing 400 n y C5N H5N NAP sing 401 n n C6N H6N NAP sing 402 n n P2B O1X NAP doub 403 n n P2B O2X NAP sing 404 n n P2B O3X NAP sing 405 n n O2X HOP2 NAP sing 406 n n O3X HOP3 NAP sing 407 n n # _atom_sites.entry_id 7V4X _atom_sites.fract_transf_matrix[1][1] 0.019013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002215 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 601 FAD FAD . C 3 NAP A 1 602 602 NAP NAP . D 4 HOH A 1 701 136 HOH HOH . D 4 HOH A 2 702 10 HOH HOH . D 4 HOH A 3 703 49 HOH HOH . D 4 HOH A 4 704 39 HOH HOH . D 4 HOH A 5 705 64 HOH HOH . D 4 HOH A 6 706 12 HOH HOH . D 4 HOH A 7 707 155 HOH HOH . D 4 HOH A 8 708 91 HOH HOH . D 4 HOH A 9 709 128 HOH HOH . D 4 HOH A 10 710 127 HOH HOH . D 4 HOH A 11 711 63 HOH HOH . D 4 HOH A 12 712 65 HOH HOH . D 4 HOH A 13 713 20 HOH HOH . D 4 HOH A 14 714 120 HOH HOH . D 4 HOH A 15 715 11 HOH HOH . D 4 HOH A 16 716 130 HOH HOH . D 4 HOH A 17 717 33 HOH HOH . D 4 HOH A 18 718 106 HOH HOH . D 4 HOH A 19 719 40 HOH HOH . D 4 HOH A 20 720 82 HOH HOH . D 4 HOH A 21 721 123 HOH HOH . D 4 HOH A 22 722 44 HOH HOH . D 4 HOH A 23 723 27 HOH HOH . D 4 HOH A 24 724 45 HOH HOH . D 4 HOH A 25 725 21 HOH HOH . D 4 HOH A 26 726 121 HOH HOH . D 4 HOH A 27 727 71 HOH HOH . D 4 HOH A 28 728 118 HOH HOH . D 4 HOH A 29 729 19 HOH HOH . D 4 HOH A 30 730 58 HOH HOH . D 4 HOH A 31 731 9 HOH HOH . D 4 HOH A 32 732 1 HOH HOH . D 4 HOH A 33 733 14 HOH HOH . D 4 HOH A 34 734 46 HOH HOH . D 4 HOH A 35 735 154 HOH HOH . D 4 HOH A 36 736 79 HOH HOH . D 4 HOH A 37 737 66 HOH HOH . D 4 HOH A 38 738 92 HOH HOH . D 4 HOH A 39 739 157 HOH HOH . D 4 HOH A 40 740 143 HOH HOH . D 4 HOH A 41 741 50 HOH HOH . D 4 HOH A 42 742 88 HOH HOH . D 4 HOH A 43 743 7 HOH HOH . D 4 HOH A 44 744 69 HOH HOH . D 4 HOH A 45 745 53 HOH HOH . D 4 HOH A 46 746 15 HOH HOH . D 4 HOH A 47 747 125 HOH HOH . D 4 HOH A 48 748 29 HOH HOH . D 4 HOH A 49 749 43 HOH HOH . D 4 HOH A 50 750 4 HOH HOH . D 4 HOH A 51 751 2 HOH HOH . D 4 HOH A 52 752 99 HOH HOH . D 4 HOH A 53 753 18 HOH HOH . D 4 HOH A 54 754 109 HOH HOH . D 4 HOH A 55 755 137 HOH HOH . D 4 HOH A 56 756 51 HOH HOH . D 4 HOH A 57 757 38 HOH HOH . D 4 HOH A 58 758 41 HOH HOH . D 4 HOH A 59 759 5 HOH HOH . D 4 HOH A 60 760 42 HOH HOH . D 4 HOH A 61 761 95 HOH HOH . D 4 HOH A 62 762 67 HOH HOH . D 4 HOH A 63 763 31 HOH HOH . D 4 HOH A 64 764 3 HOH HOH . D 4 HOH A 65 765 124 HOH HOH . D 4 HOH A 66 766 68 HOH HOH . D 4 HOH A 67 767 73 HOH HOH . D 4 HOH A 68 768 8 HOH HOH . D 4 HOH A 69 769 70 HOH HOH . D 4 HOH A 70 770 112 HOH HOH . D 4 HOH A 71 771 97 HOH HOH . D 4 HOH A 72 772 24 HOH HOH . D 4 HOH A 73 773 144 HOH HOH . D 4 HOH A 74 774 159 HOH HOH . D 4 HOH A 75 775 74 HOH HOH . D 4 HOH A 76 776 138 HOH HOH . D 4 HOH A 77 777 23 HOH HOH . D 4 HOH A 78 778 13 HOH HOH . D 4 HOH A 79 779 52 HOH HOH . D 4 HOH A 80 780 122 HOH HOH . D 4 HOH A 81 781 32 HOH HOH . D 4 HOH A 82 782 25 HOH HOH . D 4 HOH A 83 783 26 HOH HOH . D 4 HOH A 84 784 61 HOH HOH . D 4 HOH A 85 785 96 HOH HOH . D 4 HOH A 86 786 30 HOH HOH . D 4 HOH A 87 787 115 HOH HOH . D 4 HOH A 88 788 151 HOH HOH . D 4 HOH A 89 789 75 HOH HOH . D 4 HOH A 90 790 48 HOH HOH . D 4 HOH A 91 791 101 HOH HOH . D 4 HOH A 92 792 17 HOH HOH . D 4 HOH A 93 793 34 HOH HOH . D 4 HOH A 94 794 86 HOH HOH . D 4 HOH A 95 795 16 HOH HOH . D 4 HOH A 96 796 76 HOH HOH . D 4 HOH A 97 797 47 HOH HOH . D 4 HOH A 98 798 77 HOH HOH . D 4 HOH A 99 799 6 HOH HOH . D 4 HOH A 100 800 105 HOH HOH . D 4 HOH A 101 801 59 HOH HOH . D 4 HOH A 102 802 108 HOH HOH . D 4 HOH A 103 803 147 HOH HOH . D 4 HOH A 104 804 90 HOH HOH . D 4 HOH A 105 805 104 HOH HOH . D 4 HOH A 106 806 111 HOH HOH . D 4 HOH A 107 807 142 HOH HOH . D 4 HOH A 108 808 131 HOH HOH . D 4 HOH A 109 809 140 HOH HOH . D 4 HOH A 110 810 107 HOH HOH . D 4 HOH A 111 811 94 HOH HOH . D 4 HOH A 112 812 62 HOH HOH . D 4 HOH A 113 813 135 HOH HOH . D 4 HOH A 114 814 72 HOH HOH . D 4 HOH A 115 815 55 HOH HOH . D 4 HOH A 116 816 78 HOH HOH . D 4 HOH A 117 817 110 HOH HOH . D 4 HOH A 118 818 160 HOH HOH . D 4 HOH A 119 819 57 HOH HOH . D 4 HOH A 120 820 56 HOH HOH . D 4 HOH A 121 821 36 HOH HOH . D 4 HOH A 122 822 146 HOH HOH . D 4 HOH A 123 823 119 HOH HOH . D 4 HOH A 124 824 117 HOH HOH . D 4 HOH A 125 825 141 HOH HOH . D 4 HOH A 126 826 139 HOH HOH . D 4 HOH A 127 827 84 HOH HOH . D 4 HOH A 128 828 28 HOH HOH . D 4 HOH A 129 829 60 HOH HOH . D 4 HOH A 130 830 156 HOH HOH . D 4 HOH A 131 831 54 HOH HOH . D 4 HOH A 132 832 22 HOH HOH . D 4 HOH A 133 833 85 HOH HOH . D 4 HOH A 134 834 163 HOH HOH . D 4 HOH A 135 835 152 HOH HOH . D 4 HOH A 136 836 129 HOH HOH . D 4 HOH A 137 837 37 HOH HOH . D 4 HOH A 138 838 89 HOH HOH . D 4 HOH A 139 839 80 HOH HOH . D 4 HOH A 140 840 81 HOH HOH . D 4 HOH A 141 841 116 HOH HOH . D 4 HOH A 142 842 133 HOH HOH . D 4 HOH A 143 843 103 HOH HOH . D 4 HOH A 144 844 87 HOH HOH . D 4 HOH A 145 845 114 HOH HOH . D 4 HOH A 146 846 113 HOH HOH . D 4 HOH A 147 847 35 HOH HOH . D 4 HOH A 148 848 145 HOH HOH . D 4 HOH A 149 849 102 HOH HOH . D 4 HOH A 150 850 93 HOH HOH . D 4 HOH A 151 851 149 HOH HOH . D 4 HOH A 152 852 132 HOH HOH . D 4 HOH A 153 853 100 HOH HOH . D 4 HOH A 154 854 126 HOH HOH . D 4 HOH A 155 855 148 HOH HOH . D 4 HOH A 156 856 83 HOH HOH . D 4 HOH A 157 857 153 HOH HOH . D 4 HOH A 158 858 150 HOH HOH . D 4 HOH A 159 859 162 HOH HOH . D 4 HOH A 160 860 98 HOH HOH . D 4 HOH A 161 861 134 HOH HOH . D 4 HOH A 162 862 161 HOH HOH . D 4 HOH A 163 863 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 31.393 3.455 117.43 1 37.71 ? PA NAP 602 A 1 HETATM 2 O O1A NAP . . . C 3 31.78 4.805 118.008 1 43.92 ? O1A NAP 602 A 1 HETATM 3 O O2A NAP . . . C 3 30.689 2.608 118.479 1 40.25 ? O2A NAP 602 A 1 HETATM 4 O O5B NAP . . . C 3 30.405 3.676 116.176 1 39.86 ? O5B NAP 602 A 1 HETATM 5 C C5B NAP . . . C 3 29.954 2.515 115.439 1 31.68 ? C5B NAP 602 A 1 HETATM 6 C C4B NAP . . . C 3 29.09 2.935 114.301 1 36.58 ? C4B NAP 602 A 1 HETATM 7 O O4B NAP . . . C 3 28.65 1.735 113.54 1 32.96 ? O4B NAP 602 A 1 HETATM 8 C C3B NAP . . . C 3 27.873 3.61 114.795 1 31.97 ? C3B NAP 602 A 1 HETATM 9 O O3B NAP . . . C 3 27.547 4.713 113.902 1 25.11 ? O3B NAP 602 A 1 HETATM 10 C C2B NAP . . . C 3 26.818 2.602 114.748 1 30.15 ? C2B NAP 602 A 1 HETATM 11 O O2B NAP . . . C 3 25.521 3.206 114.579 1 33.55 ? O2B NAP 602 A 1 HETATM 12 C C1B NAP . . . C 3 27.154 1.791 113.577 1 30.27 ? C1B NAP 602 A 1 HETATM 13 N N9A NAP . . . C 3 26.621 0.505 113.641 1 34.59 ? N9A NAP 602 A 1 HETATM 14 C C8A NAP . . . C 3 26.93 -0.456 114.541 1 31.76 ? C8A NAP 602 A 1 HETATM 15 N N7A NAP . . . C 3 26.239 -1.541 114.287 1 31.09 ? N7A NAP 602 A 1 HETATM 16 C C5A NAP . . . C 3 25.459 -1.336 113.217 1 36.35 ? C5A NAP 602 A 1 HETATM 17 C C6A NAP . . . C 3 24.553 -2.113 112.53 1 33.89 ? C6A NAP 602 A 1 HETATM 18 N N6A NAP . . . C 3 24.298 -3.426 112.937 1 39.82 ? N6A NAP 602 A 1 HETATM 19 N N1A NAP . . . C 3 23.913 -1.6 111.463 1 28.62 ? N1A NAP 602 A 1 HETATM 20 C C2A NAP . . . C 3 24.13 -0.339 111.041 1 27.67 ? C2A NAP 602 A 1 HETATM 21 N N3A NAP . . . C 3 25.01 0.448 111.691 1 27 ? N3A NAP 602 A 1 HETATM 22 C C4A NAP . . . C 3 25.689 -0.018 112.777 1 30.92 ? C4A NAP 602 A 1 HETATM 23 O O3 NAP . . . C 3 32.689 2.7 116.936 1 42.78 ? O3 NAP 602 A 1 HETATM 24 P PN NAP . . . C 3 34.065 3.417 116.536 1 38.48 ? PN NAP 602 A 1 HETATM 25 O O1N NAP . . . C 3 33.781 4.601 115.654 1 28.95 ? O1N NAP 602 A 1 HETATM 26 O O2N NAP . . . C 3 34.929 2.422 115.811 1 41.76 ? O2N NAP 602 A 1 HETATM 27 O O5D NAP . . . C 3 34.818 3.889 117.861 1 46.98 ? O5D NAP 602 A 1 HETATM 28 C C5D NAP . . . C 3 35.016 2.919 118.901 1 53.97 ? C5D NAP 602 A 1 HETATM 29 C C4D NAP . . . C 3 35.343 3.572 120.194 1 59.6 ? C4D NAP 602 A 1 HETATM 30 O O4D NAP . . . C 3 36.793 3.928 120.238 1 53.81 ? O4D NAP 602 A 1 HETATM 31 C C3D NAP . . . C 3 34.55 4.806 120.381 1 58.57 ? C3D NAP 602 A 1 HETATM 32 O O3D NAP . . . C 3 33.987 4.809 121.721 1 48.77 ? O3D NAP 602 A 1 HETATM 33 C C2D NAP . . . C 3 35.44 5.941 120.24 1 59.84 ? C2D NAP 602 A 1 HETATM 34 O O2D NAP . . . C 3 35.228 6.889 121.339 1 59.35 ? O2D NAP 602 A 1 HETATM 35 C C1D NAP . . . C 3 36.815 5.444 120.272 1 58.7 ? C1D NAP 602 A 1 HETATM 36 N N1N NAP . . . C 3 37.505 5.924 119.156 1 59.47 ? N1N NAP 602 A 1 HETATM 37 C C2N NAP . . . C 3 38.079 7.18 119.198 1 57.83 ? C2N NAP 602 A 1 HETATM 38 C C3N NAP . . . C 3 38.762 7.667 118.084 1 45.68 ? C3N NAP 602 A 1 HETATM 39 C C7N NAP . . . C 3 39.405 9.081 118.165 1 53.94 ? C7N NAP 602 A 1 HETATM 40 O O7N NAP . . . C 3 39.447 9.817 117.19 1 56.69 ? O7N NAP 602 A 1 HETATM 41 N N7N NAP . . . C 3 39.952 9.484 119.421 1 60.15 ? N7N NAP 602 A 1 HETATM 42 C C4N NAP . . . C 3 38.881 6.901 116.935 1 45.33 ? C4N NAP 602 A 1 HETATM 43 C C5N NAP . . . C 3 38.31 5.644 116.897 1 45.92 ? C5N NAP 602 A 1 HETATM 44 C C6N NAP . . . C 3 37.618 5.158 118.017 1 50.1 ? C6N NAP 602 A 1 HETATM 45 P P2B NAP . . . C 3 24.619 3.444 115.863 1 36 ? P2B NAP 602 A 1 HETATM 46 O O1X NAP . . . C 3 24.606 2.179 116.697 1 38.86 ? O1X NAP 602 A 1 HETATM 47 O O2X NAP . . . C 3 25.178 4.581 116.682 1 28.59 ? O2X NAP 602 A 1 HETATM 48 O O3X NAP . . . C 3 23.215 3.771 115.428 1 25.96 ? O3X NAP 602 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #