data_7V6F # _model_server_result.job_id -2_C3yYCEd9LoWRBzkrHXw _model_server_result.datetime_utc '2025-02-05 04:55:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7V6F # _exptl.entry_id 7V6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.058 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCERALDEHYDE-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.43 _cell.angle_gamma 90 _cell.entry_id 7V6F _cell.length_a 119.458 _cell.length_b 56.57 _cell.length_c 131.747 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 110 A HIS 109 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 A OE1 GLU 174 A GLU 173 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A OE2 GLU 174 A GLU 173 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc4 A NE2 HIS 226 A HIS 225 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A ND1 HIS 265 A HIS 264 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 B NE2 HIS 110 B HIS 109 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc7 B OE1 GLU 174 B GLU 173 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc8 B OE2 GLU 174 B GLU 173 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc9 B NE2 HIS 226 B HIS 225 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 B ND1 HIS 265 B HIS 264 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? # _chem_comp.formula 'C3 H7 O6 P' _chem_comp.formula_weight 170.058 _chem_comp.id G3H _chem_comp.mon_nstd_flag . _chem_comp.name GLYCERALDEHYDE-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3H doub 83 n n C1 C2 G3H sing 84 n n C1 H11 G3H sing 85 n n C2 O2 G3H sing 86 n n C2 C3 G3H sing 87 n n C2 H2 G3H sing 88 n n O2 HO2 G3H sing 89 n n C3 O1P G3H sing 90 n n C3 H31 G3H sing 91 n n C3 H32 G3H sing 92 n n O1P P G3H sing 93 n n O2P P G3H doub 94 n n O3P P G3H sing 95 n n O3P HOP3 G3H sing 96 n n O4P P G3H sing 97 n n O4P HOP4 G3H sing 98 n n # _atom_sites.entry_id 7V6F _atom_sites.fract_transf_matrix[1][1] 0.008371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 G3H A 1 602 602 G3H G3H . E 2 ZN B 1 501 501 ZN ZN . F 4 HOH A 1 701 10 HOH HOH . F 4 HOH A 2 702 1 HOH HOH . F 4 HOH A 3 703 14 HOH HOH . F 4 HOH A 4 704 11 HOH HOH . F 4 HOH A 5 705 7 HOH HOH . F 4 HOH A 6 706 9 HOH HOH . F 4 HOH A 7 707 2 HOH HOH . F 4 HOH A 8 708 4 HOH HOH . G 4 HOH B 1 601 15 HOH HOH . G 4 HOH B 2 602 6 HOH HOH . G 4 HOH B 3 603 13 HOH HOH . G 4 HOH B 4 604 3 HOH HOH . G 4 HOH B 5 605 8 HOH HOH . G 4 HOH B 6 606 5 HOH HOH . G 4 HOH B 7 607 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3H . . . D 3 -9.504 16.557 12.81 1 69.35 ? O1 G3H 602 A 1 HETATM 2 C C1 G3H . . . D 3 -9.474 17.738 12.57 1 82.14 ? C1 G3H 602 A 1 HETATM 3 C C2 G3H . . . D 3 -8.434 18.551 13.252 1 89.41 ? C2 G3H 602 A 1 HETATM 4 O O2 G3H . . . D 3 -8.435 18.148 14.615 1 91.92 ? O2 G3H 602 A 1 HETATM 5 C C3 G3H . . . D 3 -8.723 20.041 13.082 1 88.73 ? C3 G3H 602 A 1 HETATM 6 O O1P G3H . . . D 3 -8.58 20.763 14.293 1 97.73 ? O1P G3H 602 A 1 HETATM 7 O O2P G3H . . . D 3 -8.299 23.146 13.754 1 100.62 ? O2P G3H 602 A 1 HETATM 8 O O3P G3H . . . D 3 -7.615 22.207 15.915 1 99.62 ? O3P G3H 602 A 1 HETATM 9 O O4P G3H . . . D 3 -6.376 21.657 13.771 1 101.55 ? O4P G3H 602 A 1 HETATM 10 P P G3H . . . D 3 -7.645 22.03 14.444 1 99.85 ? P G3H 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #