data_7V8I # _model_server_result.job_id GpgpA4b3-JJSEHKdaRyXag _model_server_result.datetime_utc '2025-02-05 08:45:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 7V8I # _exptl.entry_id 7V8I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 49 D SER 49 1_555 E MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc2 B OE1 GLN 94 D GLN 94 1_555 E MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 E MG MG . D MG 301 1_555 F O2B ANP . D ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 E MG MG . D MG 301 1_555 F O2G ANP . D ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc5 E MG MG . D MG 301 1_555 F O3G ANP . D ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 G MG MG . F MG 301 1_555 H O3G ANP . F ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc7 G MG MG . F MG 301 1_555 H O1B ANP . F ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc8 G MG MG . F MG 301 1_555 H O2B ANP . F ANP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7V8I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG D 1 301 1 MG MG . F 5 ANP D 1 302 401 ANP ANP . G 4 MG F 1 301 1 MG MG . H 5 ANP F 1 302 401 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 5 128.799 113.019 86.453 1 37.9 ? PG ANP 302 F 1 HETATM 2 O O1G ANP . . . H 5 128.319 111.699 85.932 1 37.9 ? O1G ANP 302 F 1 HETATM 3 O O2G ANP . . . H 5 127.57 113.962 86.73 1 37.9 ? O2G ANP 302 F 1 HETATM 4 O O3G ANP . . . H 5 129.753 113.708 85.398 1 37.9 ? O3G ANP 302 F 1 HETATM 5 P PB ANP . . . H 5 131.294 112.989 87.598 1 37.9 ? PB ANP 302 F 1 HETATM 6 O O1B ANP . . . H 5 131.55 112.956 86.13 1 37.9 ? O1B ANP 302 F 1 HETATM 7 O O2B ANP . . . H 5 131.749 114.363 88.167 1 37.9 ? O2B ANP 302 F 1 HETATM 8 N N3B ANP . . . H 5 129.658 112.783 87.887 1 37.9 ? N3B ANP 302 F 1 HETATM 9 P PA ANP . . . H 5 133.466 112.267 89.006 1 37.9 ? PA ANP 302 F 1 HETATM 10 O O1A ANP . . . H 5 133.206 113.019 90.253 1 37.9 -1 O1A ANP 302 F 1 HETATM 11 O O2A ANP . . . H 5 134.277 113.045 87.967 1 37.9 ? O2A ANP 302 F 1 HETATM 12 O O3A ANP . . . H 5 132.113 111.865 88.291 1 37.9 ? O3A ANP 302 F 1 HETATM 13 O O5' ANP . . . H 5 134.161 110.901 89.381 1 37.9 ? O5' ANP 302 F 1 HETATM 14 C C5' ANP . . . H 5 134.343 110.506 90.754 1 37.9 ? C5' ANP 302 F 1 HETATM 15 C C4' ANP . . . H 5 133.865 109.085 90.918 1 37.9 ? C4' ANP 302 F 1 HETATM 16 O O4' ANP . . . H 5 134.578 108.464 92.006 1 37.9 ? O4' ANP 302 F 1 HETATM 17 C C3' ANP . . . H 5 132.396 108.941 91.286 1 37.9 ? C3' ANP 302 F 1 HETATM 18 O O3' ANP . . . H 5 131.898 107.666 90.895 1 37.9 ? O3' ANP 302 F 1 HETATM 19 C C2' ANP . . . H 5 132.43 109.093 92.806 1 37.9 ? C2' ANP 302 F 1 HETATM 20 O O2' ANP . . . H 5 131.341 108.42 93.425 1 37.9 ? O2' ANP 302 F 1 HETATM 21 C C1' ANP . . . H 5 133.762 108.425 93.163 1 37.9 ? C1' ANP 302 F 1 HETATM 22 N N9 ANP . . . H 5 134.476 109.094 94.243 1 37.9 ? N9 ANP 302 F 1 HETATM 23 C C8 ANP . . . H 5 135.077 110.324 94.192 1 37.9 ? C8 ANP 302 F 1 HETATM 24 N N7 ANP . . . H 5 135.65 110.685 95.314 1 37.9 ? N7 ANP 302 F 1 HETATM 25 C C5 ANP . . . H 5 135.41 109.617 96.165 1 37.9 ? C5 ANP 302 F 1 HETATM 26 C C6 ANP . . . H 5 135.757 109.377 97.507 1 37.9 ? C6 ANP 302 F 1 HETATM 27 N N6 ANP . . . H 5 136.454 110.234 98.258 1 37.9 ? N6 ANP 302 F 1 HETATM 28 N N1 ANP . . . H 5 135.363 108.206 98.058 1 37.9 ? N1 ANP 302 F 1 HETATM 29 C C2 ANP . . . H 5 134.67 107.344 97.308 1 37.9 ? C2 ANP 302 F 1 HETATM 30 N N3 ANP . . . H 5 134.283 107.463 96.036 1 37.9 ? N3 ANP 302 F 1 HETATM 31 C C4 ANP . . . H 5 134.691 108.628 95.516 1 37.9 ? C4 ANP 302 F 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #