data_7V8O
#
_model_server_result.job_id            fRTQffFxmEQEXieegltcog 
_model_server_result.datetime_utc      '2024-10-10 05:22:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7v8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    7V8O 
#
_exptl.entry_id    7V8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7V8O 
_cell.length_a            68.301 
_cell.length_b            112.522 
_cell.length_c            156.405 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7V8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O PHE 250 B PHE 250 1_555 I NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc2 B OE2 GLU 252 B GLU 252 1_555 I NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 337 n n 
PA O2A NAP sing 338 n n 
PA O5B NAP sing 339 n n 
PA O3 NAP sing 340 n n 
O2A HOA2 NAP sing 341 n n 
O5B C5B NAP sing 342 n n 
C5B C4B NAP sing 343 n n 
C5B H51A NAP sing 344 n n 
C5B H52A NAP sing 345 n n 
C4B O4B NAP sing 346 n n 
C4B C3B NAP sing 347 n n 
C4B H4B NAP sing 348 n n 
O4B C1B NAP sing 349 n n 
C3B O3B NAP sing 350 n n 
C3B C2B NAP sing 351 n n 
C3B H3B NAP sing 352 n n 
O3B HO3A NAP sing 353 n n 
C2B O2B NAP sing 354 n n 
C2B C1B NAP sing 355 n n 
C2B H2B NAP sing 356 n n 
O2B P2B NAP sing 357 n n 
C1B N9A NAP sing 358 n n 
C1B H1B NAP sing 359 n n 
N9A C8A NAP sing 360 n y 
N9A C4A NAP sing 361 n y 
C8A N7A NAP doub 362 n y 
C8A H8A NAP sing 363 n n 
N7A C5A NAP sing 364 n y 
C5A C6A NAP sing 365 n y 
C5A C4A NAP doub 366 n y 
C6A N6A NAP sing 367 n n 
C6A N1A NAP doub 368 n y 
N6A H61A NAP sing 369 n n 
N6A H62A NAP sing 370 n n 
N1A C2A NAP sing 371 n y 
C2A N3A NAP doub 372 n y 
C2A H2A NAP sing 373 n n 
N3A C4A NAP sing 374 n y 
O3 PN NAP sing 375 n n 
PN O1N NAP doub 376 n n 
PN O2N NAP sing 377 n n 
PN O5D NAP sing 378 n n 
O5D C5D NAP sing 379 n n 
C5D C4D NAP sing 380 n n 
C5D H51N NAP sing 381 n n 
C5D H52N NAP sing 382 n n 
C4D O4D NAP sing 383 n n 
C4D C3D NAP sing 384 n n 
C4D H4D NAP sing 385 n n 
O4D C1D NAP sing 386 n n 
C3D O3D NAP sing 387 n n 
C3D C2D NAP sing 388 n n 
C3D H3D NAP sing 389 n n 
O3D HO3N NAP sing 390 n n 
C2D O2D NAP sing 391 n n 
C2D C1D NAP sing 392 n n 
C2D H2D NAP sing 393 n n 
O2D HO2N NAP sing 394 n n 
C1D N1N NAP sing 395 n n 
C1D H1D NAP sing 396 n n 
N1N C2N NAP sing 397 n y 
N1N C6N NAP doub 398 n y 
C2N C3N NAP doub 399 n y 
C2N H2N NAP sing 400 n n 
C3N C7N NAP sing 401 n n 
C3N C4N NAP sing 402 n y 
C7N O7N NAP doub 403 n n 
C7N N7N NAP sing 404 n n 
N7N H71N NAP sing 405 n n 
N7N H72N NAP sing 406 n n 
C4N C5N NAP doub 407 n y 
C4N H4N NAP sing 408 n n 
C5N C6N NAP sing 409 n y 
C5N H5N NAP sing 410 n n 
C6N H6N NAP sing 411 n n 
P2B O1X NAP doub 412 n n 
P2B O2X NAP sing 413 n n 
P2B O3X NAP sing 414 n n 
O2X HOP2 NAP sing 415 n n 
O3X HOP3 NAP sing 416 n n 
#
_atom_sites.entry_id                     7V8O 
_atom_sites.fract_transf_matrix[1][1]    0.014641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 NAP A 1 602 602 NAP NAP . 
E 2 FAD B 1 601 601 FAD FAD . 
F 3 NAP B 1 602 602 NAP NAP . 
G 4 PEG B 1 603 603 PEG PEG . 
H 5 EDO B 1 604 604 EDO EDO . 
I 6 NA B 1 605 1 NA NA . 
J 7 HOH A 1 701 15 HOH HOH . 
J 7 HOH A 2 702 7 HOH HOH . 
J 7 HOH A 3 703 13 HOH HOH . 
J 7 HOH A 4 704 8 HOH HOH . 
J 7 HOH A 5 705 5 HOH HOH . 
J 7 HOH A 6 706 10 HOH HOH . 
K 7 HOH B 1 701 1 HOH HOH . 
K 7 HOH B 2 702 12 HOH HOH . 
K 7 HOH B 3 703 4 HOH HOH . 
K 7 HOH B 4 704 2 HOH HOH . 
K 7 HOH B 5 705 14 HOH HOH . 
K 7 HOH B 6 706 9 HOH HOH . 
K 7 HOH B 7 707 3 HOH HOH . 
K 7 HOH B 8 708 6 HOH HOH . 
K 7 HOH B 9 709 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 5.946 16.639 21.878 1 40.32 ? PA NAP 602 A 1 
HETATM 2 O O1A NAP . . . D 3 5.628 16.363 23.311 1 38.15 ? O1A NAP 602 A 1 
HETATM 3 O O2A NAP . . . D 3 4.96 17.456 21.108 1 43.17 ? O2A NAP 602 A 1 
HETATM 4 O O5B NAP . . . D 3 7.383 17.338 21.798 1 39.26 ? O5B NAP 602 A 1 
HETATM 5 C C5B NAP . . . D 3 7.75 18.097 20.624 1 39.62 ? C5B NAP 602 A 1 
HETATM 6 C C4B NAP . . . D 3 9.056 18.801 20.889 1 40.52 ? C4B NAP 602 A 1 
HETATM 7 O O4B NAP . . . D 3 9.462 19.492 19.681 1 40.87 ? O4B NAP 602 A 1 
HETATM 8 C C3B NAP . . . D 3 9.028 19.873 21.989 1 41.53 ? C3B NAP 602 A 1 
HETATM 9 O O3B NAP . . . D 3 10.255 19.947 22.702 1 41.19 ? O3B NAP 602 A 1 
HETATM 10 C C2B NAP . . . D 3 8.783 21.14 21.187 1 42.14 ? C2B NAP 602 A 1 
HETATM 11 O O2B NAP . . . D 3 9.233 22.297 21.895 1 43.18 ? O2B NAP 602 A 1 
HETATM 12 C C1B NAP . . . D 3 9.635 20.859 19.957 1 42.77 ? C1B NAP 602 A 1 
HETATM 13 N N9A NAP . . . D 3 9.239 21.627 18.783 1 44.46 ? N9A NAP 602 A 1 
HETATM 14 C C8A NAP . . . D 3 8.028 21.58 18.139 1 44.48 ? C8A NAP 602 A 1 
HETATM 15 N N7A NAP . . . D 3 7.952 22.397 17.119 1 44.53 ? N7A NAP 602 A 1 
HETATM 16 C C5A NAP . . . D 3 9.188 23.026 17.09 1 44.66 ? C5A NAP 602 A 1 
HETATM 17 C C6A NAP . . . D 3 9.732 24.006 16.237 1 44.37 ? C6A NAP 602 A 1 
HETATM 18 N N6A NAP . . . D 3 9.069 24.545 15.22 1 44.43 ? N6A NAP 602 A 1 
HETATM 19 N N1A NAP . . . D 3 10.998 24.421 16.486 1 44.04 ? N1A NAP 602 A 1 
HETATM 20 C C2A NAP . . . D 3 11.66 23.874 17.515 1 43.18 ? C2A NAP 602 A 1 
HETATM 21 N N3A NAP . . . D 3 11.252 22.949 18.379 1 43.07 ? N3A NAP 602 A 1 
HETATM 22 C C4A NAP . . . D 3 9.993 22.56 18.111 1 44.15 ? C4A NAP 602 A 1 
HETATM 23 O O3 NAP . . . D 3 6.182 15.267 21.059 1 38.12 ? O3 NAP 602 A 1 
HETATM 24 P PN NAP . . . D 3 6.864 13.841 21.344 1 36.46 ? PN NAP 602 A 1 
HETATM 25 O O1N NAP . . . D 3 6.82 12.99 20.115 1 35.47 ? O1N NAP 602 A 1 
HETATM 26 O O2N NAP . . . D 3 8.206 14.096 21.951 1 35.76 ? O2N NAP 602 A 1 
HETATM 27 O O5D NAP . . . D 3 5.886 13.216 22.464 1 42.08 ? O5D NAP 602 A 1 
HETATM 28 C C5D NAP . . . D 3 4.469 12.929 22.252 1 47.27 ? C5D NAP 602 A 1 
HETATM 29 C C4D NAP . . . D 3 4.11 11.579 22.839 1 51.17 ? C4D NAP 602 A 1 
HETATM 30 O O4D NAP . . . D 3 5.058 10.602 22.358 1 57.4 ? O4D NAP 602 A 1 
HETATM 31 C C3D NAP . . . D 3 4.108 11.464 24.375 1 51.51 ? C3D NAP 602 A 1 
HETATM 32 O O3D NAP . . . D 3 2.798 11.591 24.912 1 50.81 ? O3D NAP 602 A 1 
HETATM 33 C C2D NAP . . . D 3 4.662 10.059 24.658 1 54.66 ? C2D NAP 602 A 1 
HETATM 34 O O2D NAP . . . D 3 3.67 9.146 25.115 1 50.79 ? O2D NAP 602 A 1 
HETATM 35 C C1D NAP . . . D 3 5.274 9.585 23.336 1 58.09 ? C1D NAP 602 A 1 
HETATM 36 N N1N NAP . . . D 3 6.749 9.341 23.437 1 58.01 ? N1N NAP 602 A 1 
HETATM 37 P P2B NAP . . . D 3 8.002 23.27 22.306 1 45.34 ? P2B NAP 602 A 1 
HETATM 38 O O1X NAP . . . D 3 8.572 24.672 22.33 1 42.66 ? O1X NAP 602 A 1 
HETATM 39 O O2X NAP . . . D 3 6.935 23.099 21.236 1 43.94 ? O2X NAP 602 A 1 
HETATM 40 O O3X NAP . . . D 3 7.507 22.833 23.678 1 45.88 ? O3X NAP 602 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#