data_7V9B # _model_server_result.job_id v4N8KawvyiGdumd-Zg77cQ _model_server_result.datetime_utc '2024-11-04 20:14:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7v9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 7V9B # _exptl.entry_id 7V9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7V9B _cell.length_a 77.88 _cell.length_b 81.04 _cell.length_c 83.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_955 -x+4,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 311.52 0 41.64 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B N ARG 1 B ARG 248 1_555 G C25 323 . B 323 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale2 B C VAL 5 B VAL 252 1_555 B N SEP 6 B SEP 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C SEP 6 B SEP 253 1_555 B N MET 7 B MET 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 242 n y N1 C5 IMD sing 243 n y N1 HN1 IMD sing 244 n n C2 N3 IMD doub 245 n y C2 H2 IMD sing 246 n n N3 C4 IMD sing 247 n y N3 HN3 IMD sing 248 n n C4 C5 IMD doub 249 n y C4 H4 IMD sing 250 n n C5 H5 IMD sing 251 n n # _atom_sites.entry_id 7V9B _atom_sites.fract_transf_matrix[1][1] 0.01284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 3 GOL A 1 302 2 GOL GOL . E 4 MPD A 1 303 1 MPD MPD . F 5 IMD A 1 304 3 IMD IMD . G 6 323 B 1 301 247 323 323 . H 7 HOH A 1 401 123 HOH HOH . H 7 HOH A 2 402 161 HOH HOH . H 7 HOH A 3 403 126 HOH HOH . H 7 HOH A 4 404 158 HOH HOH . H 7 HOH A 5 405 122 HOH HOH . H 7 HOH A 6 406 112 HOH HOH . H 7 HOH A 7 407 33 HOH HOH . H 7 HOH A 8 408 171 HOH HOH . H 7 HOH A 9 409 16 HOH HOH . H 7 HOH A 10 410 24 HOH HOH . H 7 HOH A 11 411 160 HOH HOH . H 7 HOH A 12 412 86 HOH HOH . H 7 HOH A 13 413 78 HOH HOH . H 7 HOH A 14 414 32 HOH HOH . H 7 HOH A 15 415 83 HOH HOH . H 7 HOH A 16 416 97 HOH HOH . H 7 HOH A 17 417 125 HOH HOH . H 7 HOH A 18 418 130 HOH HOH . H 7 HOH A 19 419 157 HOH HOH . H 7 HOH A 20 420 11 HOH HOH . H 7 HOH A 21 421 35 HOH HOH . H 7 HOH A 22 422 57 HOH HOH . H 7 HOH A 23 423 68 HOH HOH . H 7 HOH A 24 424 145 HOH HOH . H 7 HOH A 25 425 132 HOH HOH . H 7 HOH A 26 426 29 HOH HOH . H 7 HOH A 27 427 85 HOH HOH . H 7 HOH A 28 428 2 HOH HOH . H 7 HOH A 29 429 137 HOH HOH . H 7 HOH A 30 430 107 HOH HOH . H 7 HOH A 31 431 36 HOH HOH . H 7 HOH A 32 432 134 HOH HOH . H 7 HOH A 33 433 49 HOH HOH . H 7 HOH A 34 434 20 HOH HOH . H 7 HOH A 35 435 79 HOH HOH . H 7 HOH A 36 436 37 HOH HOH . H 7 HOH A 37 437 31 HOH HOH . H 7 HOH A 38 438 41 HOH HOH . H 7 HOH A 39 439 9 HOH HOH . H 7 HOH A 40 440 7 HOH HOH . H 7 HOH A 41 441 114 HOH HOH . H 7 HOH A 42 442 14 HOH HOH . H 7 HOH A 43 443 8 HOH HOH . H 7 HOH A 44 444 42 HOH HOH . H 7 HOH A 45 445 40 HOH HOH . H 7 HOH A 46 446 99 HOH HOH . H 7 HOH A 47 447 84 HOH HOH . H 7 HOH A 48 448 82 HOH HOH . H 7 HOH A 49 449 52 HOH HOH . H 7 HOH A 50 450 143 HOH HOH . H 7 HOH A 51 451 98 HOH HOH . H 7 HOH A 52 452 10 HOH HOH . H 7 HOH A 53 453 1 HOH HOH . H 7 HOH A 54 454 144 HOH HOH . H 7 HOH A 55 455 28 HOH HOH . H 7 HOH A 56 456 152 HOH HOH . H 7 HOH A 57 457 102 HOH HOH . H 7 HOH A 58 458 72 HOH HOH . H 7 HOH A 59 459 12 HOH HOH . H 7 HOH A 60 460 71 HOH HOH . H 7 HOH A 61 461 23 HOH HOH . H 7 HOH A 62 462 5 HOH HOH . H 7 HOH A 63 463 100 HOH HOH . H 7 HOH A 64 464 4 HOH HOH . H 7 HOH A 65 465 93 HOH HOH . H 7 HOH A 66 466 168 HOH HOH . H 7 HOH A 67 467 94 HOH HOH . H 7 HOH A 68 468 175 HOH HOH . H 7 HOH A 69 469 13 HOH HOH . H 7 HOH A 70 470 55 HOH HOH . H 7 HOH A 71 471 66 HOH HOH . H 7 HOH A 72 472 91 HOH HOH . H 7 HOH A 73 473 73 HOH HOH . H 7 HOH A 74 474 34 HOH HOH . H 7 HOH A 75 475 51 HOH HOH . H 7 HOH A 76 476 64 HOH HOH . H 7 HOH A 77 477 3 HOH HOH . H 7 HOH A 78 478 92 HOH HOH . H 7 HOH A 79 479 30 HOH HOH . H 7 HOH A 80 480 44 HOH HOH . H 7 HOH A 81 481 17 HOH HOH . H 7 HOH A 82 482 19 HOH HOH . H 7 HOH A 83 483 150 HOH HOH . H 7 HOH A 84 484 111 HOH HOH . H 7 HOH A 85 485 77 HOH HOH . H 7 HOH A 86 486 80 HOH HOH . H 7 HOH A 87 487 166 HOH HOH . H 7 HOH A 88 488 88 HOH HOH . H 7 HOH A 89 489 103 HOH HOH . H 7 HOH A 90 490 138 HOH HOH . H 7 HOH A 91 491 140 HOH HOH . H 7 HOH A 92 492 120 HOH HOH . H 7 HOH A 93 493 22 HOH HOH . H 7 HOH A 94 494 81 HOH HOH . H 7 HOH A 95 495 6 HOH HOH . H 7 HOH A 96 496 76 HOH HOH . H 7 HOH A 97 497 147 HOH HOH . H 7 HOH A 98 498 119 HOH HOH . H 7 HOH A 99 499 96 HOH HOH . H 7 HOH A 100 500 26 HOH HOH . H 7 HOH A 101 501 162 HOH HOH . H 7 HOH A 102 502 60 HOH HOH . H 7 HOH A 103 503 67 HOH HOH . H 7 HOH A 104 504 141 HOH HOH . H 7 HOH A 105 505 151 HOH HOH . H 7 HOH A 106 506 75 HOH HOH . H 7 HOH A 107 507 38 HOH HOH . H 7 HOH A 108 508 74 HOH HOH . H 7 HOH A 109 509 149 HOH HOH . H 7 HOH A 110 510 127 HOH HOH . H 7 HOH A 111 511 54 HOH HOH . H 7 HOH A 112 512 117 HOH HOH . H 7 HOH A 113 513 174 HOH HOH . H 7 HOH A 114 514 142 HOH HOH . H 7 HOH A 115 515 62 HOH HOH . H 7 HOH A 116 516 173 HOH HOH . H 7 HOH A 117 517 53 HOH HOH . H 7 HOH A 118 518 159 HOH HOH . H 7 HOH A 119 519 15 HOH HOH . H 7 HOH A 120 520 39 HOH HOH . H 7 HOH A 121 521 104 HOH HOH . H 7 HOH A 122 522 136 HOH HOH . H 7 HOH A 123 523 156 HOH HOH . H 7 HOH A 124 524 164 HOH HOH . H 7 HOH A 125 525 25 HOH HOH . H 7 HOH A 126 526 148 HOH HOH . H 7 HOH A 127 527 128 HOH HOH . H 7 HOH A 128 528 45 HOH HOH . H 7 HOH A 129 529 46 HOH HOH . H 7 HOH A 130 530 129 HOH HOH . H 7 HOH A 131 531 135 HOH HOH . H 7 HOH A 132 532 47 HOH HOH . H 7 HOH A 133 533 48 HOH HOH . H 7 HOH A 134 534 56 HOH HOH . H 7 HOH A 135 535 115 HOH HOH . H 7 HOH A 136 536 146 HOH HOH . H 7 HOH A 137 537 165 HOH HOH . H 7 HOH A 138 538 172 HOH HOH . H 7 HOH A 139 539 116 HOH HOH . H 7 HOH A 140 540 87 HOH HOH . H 7 HOH A 141 541 170 HOH HOH . H 7 HOH A 142 542 69 HOH HOH . H 7 HOH A 143 543 27 HOH HOH . H 7 HOH A 144 544 155 HOH HOH . H 7 HOH A 145 545 65 HOH HOH . H 7 HOH A 146 546 139 HOH HOH . H 7 HOH A 147 547 101 HOH HOH . H 7 HOH A 148 548 163 HOH HOH . H 7 HOH A 149 549 121 HOH HOH . I 7 HOH B 1 401 18 HOH HOH . I 7 HOH B 2 402 58 HOH HOH . I 7 HOH B 3 403 70 HOH HOH . I 7 HOH B 4 404 110 HOH HOH . I 7 HOH B 5 405 131 HOH HOH . I 7 HOH B 6 406 50 HOH HOH . I 7 HOH B 7 407 95 HOH HOH . I 7 HOH B 8 408 59 HOH HOH . I 7 HOH B 9 409 169 HOH HOH . I 7 HOH B 10 410 61 HOH HOH . I 7 HOH B 11 411 63 HOH HOH . I 7 HOH B 12 412 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . F 5 178.967 64.47 25.044 1 63.81 ? N1 IMD 304 A 1 HETATM 2 C C2 IMD . . . F 5 177.691 64.851 25.077 1 61.94 ? C2 IMD 304 A 1 HETATM 3 N N3 IMD . . . F 5 177.407 65.417 23.928 1 65.65 ? N3 IMD 304 A 1 HETATM 4 C C4 IMD . . . F 5 178.519 65.412 23.137 1 55.55 ? C4 IMD 304 A 1 HETATM 5 C C5 IMD . . . F 5 179.488 64.803 23.829 1 62.9 ? C5 IMD 304 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #