data_7VA2
#
_model_server_result.job_id            84KLm65RjwTBQvZmLK853Q 
_model_server_result.datetime_utc      '2024-10-10 06:26:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7va2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
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_entry.id    7VA2 
#
_exptl.entry_id    7VA2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VA2 
_cell.length_a            82.627 
_cell.length_b            82.627 
_cell.length_c            192.577 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VA2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    'I 4bw' 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             109 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              109 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             109 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              109 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.089 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 213 n y 
N1 C5 IMD sing 214 n y 
N1 HN1 IMD sing 215 n n 
C2 N3 IMD doub 216 n y 
C2 H2 IMD sing 217 n n 
N3 C4 IMD sing 218 n y 
N3 HN3 IMD sing 219 n n 
C4 C5 IMD doub 220 n y 
C4 H4 IMD sing 221 n n 
C5 H5 IMD sing 222 n n 
#
_atom_sites.entry_id                     7VA2 
_atom_sites.fract_transf_matrix[1][1]    0.012103 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IMD A 1 201 201 IMD IMD . 
D 3 PO4 A 1 202 301 PO4 PO4 . 
E 4 5GP A 1 203 1 5GP 5GP . 
F 5 HOH A 1 301 53 HOH HOH . 
F 5 HOH A 2 302 44 HOH HOH . 
F 5 HOH A 3 303 40 HOH HOH . 
F 5 HOH A 4 304 79 HOH HOH . 
F 5 HOH A 5 305 74 HOH HOH . 
F 5 HOH A 6 306 60 HOH HOH . 
F 5 HOH A 7 307 17 HOH HOH . 
F 5 HOH A 8 308 42 HOH HOH . 
F 5 HOH A 9 309 65 HOH HOH . 
F 5 HOH A 10 310 49 HOH HOH . 
F 5 HOH A 11 311 4 HOH HOH . 
F 5 HOH A 12 312 36 HOH HOH . 
F 5 HOH A 13 313 6 HOH HOH . 
F 5 HOH A 14 314 39 HOH HOH . 
F 5 HOH A 15 315 57 HOH HOH . 
F 5 HOH A 16 316 25 HOH HOH . 
F 5 HOH A 17 317 82 HOH HOH . 
F 5 HOH A 18 318 11 HOH HOH . 
F 5 HOH A 19 319 5 HOH HOH . 
F 5 HOH A 20 320 1 HOH HOH . 
F 5 HOH A 21 321 9 HOH HOH . 
F 5 HOH A 22 322 12 HOH HOH . 
F 5 HOH A 23 323 71 HOH HOH . 
F 5 HOH A 24 324 47 HOH HOH . 
F 5 HOH A 25 325 26 HOH HOH . 
F 5 HOH A 26 326 14 HOH HOH . 
F 5 HOH A 27 327 21 HOH HOH . 
F 5 HOH A 28 328 16 HOH HOH . 
F 5 HOH A 29 329 28 HOH HOH . 
F 5 HOH A 30 330 22 HOH HOH . 
F 5 HOH A 31 331 15 HOH HOH . 
F 5 HOH A 32 332 20 HOH HOH . 
F 5 HOH A 33 333 45 HOH HOH . 
F 5 HOH A 34 334 3 HOH HOH . 
F 5 HOH A 35 335 69 HOH HOH . 
F 5 HOH A 36 336 24 HOH HOH . 
F 5 HOH A 37 337 41 HOH HOH . 
F 5 HOH A 38 338 75 HOH HOH . 
F 5 HOH A 39 339 52 HOH HOH . 
F 5 HOH A 40 340 46 HOH HOH . 
F 5 HOH A 41 342 80 HOH HOH . 
F 5 HOH A 42 343 50 HOH HOH . 
F 5 HOH A 43 344 85 HOH HOH . 
G 5 HOH B 1 201 55 HOH HOH . 
G 5 HOH B 2 202 76 HOH HOH . 
G 5 HOH B 3 203 43 HOH HOH . 
G 5 HOH B 4 204 13 HOH HOH . 
G 5 HOH B 5 205 38 HOH HOH . 
G 5 HOH B 6 206 2 HOH HOH . 
G 5 HOH B 7 207 59 HOH HOH . 
G 5 HOH B 8 208 54 HOH HOH . 
G 5 HOH B 9 209 23 HOH HOH . 
G 5 HOH B 10 210 29 HOH HOH . 
G 5 HOH B 11 211 58 HOH HOH . 
G 5 HOH B 12 212 64 HOH HOH . 
G 5 HOH B 13 213 10 HOH HOH . 
G 5 HOH B 14 214 33 HOH HOH . 
G 5 HOH B 15 215 78 HOH HOH . 
G 5 HOH B 16 216 61 HOH HOH . 
G 5 HOH B 17 217 77 HOH HOH . 
G 5 HOH B 18 218 56 HOH HOH . 
G 5 HOH B 19 219 7 HOH HOH . 
G 5 HOH B 20 220 37 HOH HOH . 
G 5 HOH B 21 221 31 HOH HOH . 
G 5 HOH B 22 222 30 HOH HOH . 
G 5 HOH B 23 223 66 HOH HOH . 
G 5 HOH B 24 224 18 HOH HOH . 
G 5 HOH B 25 225 81 HOH HOH . 
G 5 HOH B 26 226 35 HOH HOH . 
G 5 HOH B 27 227 8 HOH HOH . 
G 5 HOH B 28 228 63 HOH HOH . 
G 5 HOH B 29 229 19 HOH HOH . 
G 5 HOH B 30 230 48 HOH HOH . 
G 5 HOH B 31 231 34 HOH HOH . 
G 5 HOH B 32 232 62 HOH HOH . 
G 5 HOH B 33 233 70 HOH HOH . 
G 5 HOH B 34 234 83 HOH HOH . 
G 5 HOH B 35 235 32 HOH HOH . 
G 5 HOH B 36 236 84 HOH HOH . 
G 5 HOH B 37 237 72 HOH HOH . 
G 5 HOH B 38 238 86 HOH HOH . 
G 5 HOH B 39 239 67 HOH HOH . 
G 5 HOH B 40 240 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . C 2 90.863 85.503 0.099 1 67.48 ? N1 IMD 201 A 1 
HETATM 2 C C2 IMD . . . C 2 91.506 85.789 1.269 1 62.31 ? C2 IMD 201 A 1 
HETATM 3 N N3 IMD . . . C 2 90.623 85.716 2.297 1 53.94 ? N3 IMD 201 A 1 
HETATM 4 C C4 IMD . . . C 2 89.416 85.386 1.772 1 60.3 ? C4 IMD 201 A 1 
HETATM 5 C C5 IMD . . . C 2 89.562 85.249 0.386 1 66.91 ? C5 IMD 201 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#