data_7VA2 # _model_server_result.job_id eaIwjX1D5GBfJaq8P38doQ _model_server_result.datetime_utc '2024-10-10 06:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7va2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 7VA2 # _exptl.entry_id 7VA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VA2 _cell.length_a 82.627 _cell.length_b 82.627 _cell.length_c 192.577 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall 'I 4bw' _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 109 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 109 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 109 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 109 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.089 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 7VA2 _atom_sites.fract_transf_matrix[1][1] 0.012103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMD A 1 201 201 IMD IMD . D 3 PO4 A 1 202 301 PO4 PO4 . E 4 5GP A 1 203 1 5GP 5GP . F 5 HOH A 1 301 53 HOH HOH . F 5 HOH A 2 302 44 HOH HOH . F 5 HOH A 3 303 40 HOH HOH . F 5 HOH A 4 304 79 HOH HOH . F 5 HOH A 5 305 74 HOH HOH . F 5 HOH A 6 306 60 HOH HOH . F 5 HOH A 7 307 17 HOH HOH . F 5 HOH A 8 308 42 HOH HOH . F 5 HOH A 9 309 65 HOH HOH . F 5 HOH A 10 310 49 HOH HOH . F 5 HOH A 11 311 4 HOH HOH . F 5 HOH A 12 312 36 HOH HOH . F 5 HOH A 13 313 6 HOH HOH . F 5 HOH A 14 314 39 HOH HOH . F 5 HOH A 15 315 57 HOH HOH . F 5 HOH A 16 316 25 HOH HOH . F 5 HOH A 17 317 82 HOH HOH . F 5 HOH A 18 318 11 HOH HOH . F 5 HOH A 19 319 5 HOH HOH . F 5 HOH A 20 320 1 HOH HOH . F 5 HOH A 21 321 9 HOH HOH . F 5 HOH A 22 322 12 HOH HOH . F 5 HOH A 23 323 71 HOH HOH . F 5 HOH A 24 324 47 HOH HOH . F 5 HOH A 25 325 26 HOH HOH . F 5 HOH A 26 326 14 HOH HOH . F 5 HOH A 27 327 21 HOH HOH . F 5 HOH A 28 328 16 HOH HOH . F 5 HOH A 29 329 28 HOH HOH . F 5 HOH A 30 330 22 HOH HOH . F 5 HOH A 31 331 15 HOH HOH . F 5 HOH A 32 332 20 HOH HOH . F 5 HOH A 33 333 45 HOH HOH . F 5 HOH A 34 334 3 HOH HOH . F 5 HOH A 35 335 69 HOH HOH . F 5 HOH A 36 336 24 HOH HOH . F 5 HOH A 37 337 41 HOH HOH . F 5 HOH A 38 338 75 HOH HOH . F 5 HOH A 39 339 52 HOH HOH . F 5 HOH A 40 340 46 HOH HOH . F 5 HOH A 41 342 80 HOH HOH . F 5 HOH A 42 343 50 HOH HOH . F 5 HOH A 43 344 85 HOH HOH . G 5 HOH B 1 201 55 HOH HOH . G 5 HOH B 2 202 76 HOH HOH . G 5 HOH B 3 203 43 HOH HOH . G 5 HOH B 4 204 13 HOH HOH . G 5 HOH B 5 205 38 HOH HOH . G 5 HOH B 6 206 2 HOH HOH . G 5 HOH B 7 207 59 HOH HOH . G 5 HOH B 8 208 54 HOH HOH . G 5 HOH B 9 209 23 HOH HOH . G 5 HOH B 10 210 29 HOH HOH . G 5 HOH B 11 211 58 HOH HOH . G 5 HOH B 12 212 64 HOH HOH . G 5 HOH B 13 213 10 HOH HOH . G 5 HOH B 14 214 33 HOH HOH . G 5 HOH B 15 215 78 HOH HOH . G 5 HOH B 16 216 61 HOH HOH . G 5 HOH B 17 217 77 HOH HOH . G 5 HOH B 18 218 56 HOH HOH . G 5 HOH B 19 219 7 HOH HOH . G 5 HOH B 20 220 37 HOH HOH . G 5 HOH B 21 221 31 HOH HOH . G 5 HOH B 22 222 30 HOH HOH . G 5 HOH B 23 223 66 HOH HOH . G 5 HOH B 24 224 18 HOH HOH . G 5 HOH B 25 225 81 HOH HOH . G 5 HOH B 26 226 35 HOH HOH . G 5 HOH B 27 227 8 HOH HOH . G 5 HOH B 28 228 63 HOH HOH . G 5 HOH B 29 229 19 HOH HOH . G 5 HOH B 30 230 48 HOH HOH . G 5 HOH B 31 231 34 HOH HOH . G 5 HOH B 32 232 62 HOH HOH . G 5 HOH B 33 233 70 HOH HOH . G 5 HOH B 34 234 83 HOH HOH . G 5 HOH B 35 235 32 HOH HOH . G 5 HOH B 36 236 84 HOH HOH . G 5 HOH B 37 237 72 HOH HOH . G 5 HOH B 38 238 86 HOH HOH . G 5 HOH B 39 239 67 HOH HOH . G 5 HOH B 40 240 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . E 4 102.281 89.652 -11.137 0.74 75.35 ? P 5GP 203 A 1 HETATM 2 O O1P 5GP . . . E 4 102.686 90.835 -11.988 0.74 60.11 ? O1P 5GP 203 A 1 HETATM 3 O O2P 5GP . . . E 4 103.048 88.383 -11.445 0.74 70.04 ? O2P 5GP 203 A 1 HETATM 4 O O3P 5GP . . . E 4 102.147 89.974 -9.658 0.74 85.22 ? O3P 5GP 203 A 1 HETATM 5 O O5' 5GP . . . E 4 100.759 89.33 -11.492 0.74 77.55 ? O5' 5GP 203 A 1 HETATM 6 C C5' 5GP . . . E 4 100.316 89.185 -12.826 0.74 69.6 ? C5' 5GP 203 A 1 HETATM 7 C C4' 5GP . . . E 4 99.022 89.924 -13.059 0.74 65.83 ? C4' 5GP 203 A 1 HETATM 8 O O4' 5GP . . . E 4 99.059 91.189 -12.367 0.74 64.97 ? O4' 5GP 203 A 1 HETATM 9 C C3' 5GP . . . E 4 98.746 90.288 -14.509 0.74 59.38 ? C3' 5GP 203 A 1 HETATM 10 O O3' 5GP . . . E 4 98.123 89.229 -15.205 0.74 49.77 ? O3' 5GP 203 A 1 HETATM 11 C C2' 5GP . . . E 4 97.897 91.56 -14.422 0.74 67.41 ? C2' 5GP 203 A 1 HETATM 12 O O2' 5GP . . . E 4 96.508 91.256 -14.377 0.74 59.69 ? O2' 5GP 203 A 1 HETATM 13 C C1' 5GP . . . E 4 98.313 92.153 -13.07 0.74 70.39 ? C1' 5GP 203 A 1 HETATM 14 N N9 5GP . . . E 4 99.15 93.36 -13.211 0.74 80.47 ? N9 5GP 203 A 1 HETATM 15 C C8 5GP . . . E 4 100.456 93.465 -12.9 0.74 81.38 ? C8 5GP 203 A 1 HETATM 16 N N7 5GP . . . E 4 100.87 94.733 -13.133 0.74 80.59 ? N7 5GP 203 A 1 HETATM 17 C C5 5GP . . . E 4 99.798 95.424 -13.58 0.74 80.74 ? C5 5GP 203 A 1 HETATM 18 C C6 5GP . . . E 4 99.612 96.74 -13.973 0.74 79.13 ? C6 5GP 203 A 1 HETATM 19 O O6 5GP . . . E 4 100.578 97.539 -13.946 0.74 71.94 ? O6 5GP 203 A 1 HETATM 20 N N1 5GP . . . E 4 98.393 97.131 -14.381 0.74 81.77 ? N1 5GP 203 A 1 HETATM 21 C C2 5GP . . . E 4 97.349 96.278 -14.416 0.74 76.82 ? C2 5GP 203 A 1 HETATM 22 N N2 5GP . . . E 4 96.127 96.706 -14.836 0.74 70.17 ? N2 5GP 203 A 1 HETATM 23 N N3 5GP . . . E 4 97.502 94.988 -14.039 0.74 73.52 ? N3 5GP 203 A 1 HETATM 24 C C4 5GP . . . E 4 98.716 94.554 -13.617 0.74 79.13 ? C4 5GP 203 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #