data_7VA3
#
_model_server_result.job_id            Er98msiIIa_XwLEYHTB6Fw 
_model_server_result.datetime_utc      '2024-10-10 11:22:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7va3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    7VA3 
#
_exptl.entry_id    7VA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VA3 
_cell.length_a            83.223 
_cell.length_b            83.223 
_cell.length_c            192.553 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    'I 4bw' 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 109 A CYS 109 1_555 B SG CYS 109 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc1 A NH1 ARG 129 A ARG 129 1_555 F MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc2 E MN MN . A MN 202 1_555 G O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VA3 
_atom_sites.fract_transf_matrix[1][1]    0.012016 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 IMD A 1 201 201 IMD IMD . 
E 4 MN A 1 202 202 MN MN . 
F 4 MN A 1 203 203 MN MN . 
G 5 HOH A 1 301 302 HOH HOH . 
G 5 HOH A 2 302 303 HOH HOH . 
G 5 HOH A 3 303 304 HOH HOH . 
G 5 HOH A 4 304 305 HOH HOH . 
G 5 HOH A 5 305 310 HOH HOH . 
G 5 HOH A 6 306 308 HOH HOH . 
G 5 HOH A 7 307 307 HOH HOH . 
G 5 HOH A 8 308 319 HOH HOH . 
G 5 HOH A 9 309 309 HOH HOH . 
G 5 HOH A 10 310 312 HOH HOH . 
G 5 HOH A 11 311 314 HOH HOH . 
G 5 HOH A 12 312 311 HOH HOH . 
G 5 HOH A 13 313 313 HOH HOH . 
G 5 HOH A 14 314 336 HOH HOH . 
G 5 HOH A 15 315 316 HOH HOH . 
G 5 HOH A 16 316 317 HOH HOH . 
G 5 HOH A 17 317 320 HOH HOH . 
G 5 HOH A 18 318 329 HOH HOH . 
G 5 HOH A 19 319 318 HOH HOH . 
G 5 HOH A 20 320 306 HOH HOH . 
G 5 HOH A 21 321 326 HOH HOH . 
G 5 HOH A 22 322 334 HOH HOH . 
G 5 HOH A 23 323 323 HOH HOH . 
G 5 HOH A 24 324 332 HOH HOH . 
G 5 HOH A 25 325 325 HOH HOH . 
G 5 HOH A 26 326 331 HOH HOH . 
G 5 HOH A 27 327 324 HOH HOH . 
G 5 HOH A 28 328 330 HOH HOH . 
G 5 HOH A 29 329 328 HOH HOH . 
G 5 HOH A 30 330 341 HOH HOH . 
G 5 HOH A 31 331 333 HOH HOH . 
G 5 HOH A 32 332 327 HOH HOH . 
G 5 HOH A 33 333 338 HOH HOH . 
G 5 HOH A 34 334 335 HOH HOH . 
G 5 HOH A 35 335 346 HOH HOH . 
G 5 HOH A 36 336 348 HOH HOH . 
G 5 HOH A 37 337 344 HOH HOH . 
G 5 HOH A 38 338 347 HOH HOH . 
G 5 HOH A 39 339 340 HOH HOH . 
G 5 HOH A 40 340 349 HOH HOH . 
G 5 HOH A 41 341 352 HOH HOH . 
G 5 HOH A 42 342 351 HOH HOH . 
G 5 HOH A 43 343 353 HOH HOH . 
G 5 HOH A 44 344 354 HOH HOH . 
G 5 HOH A 45 345 360 HOH HOH . 
G 5 HOH A 46 346 367 HOH HOH . 
G 5 HOH A 47 347 371 HOH HOH . 
G 5 HOH A 48 348 355 HOH HOH . 
G 5 HOH A 49 349 365 HOH HOH . 
G 5 HOH A 50 350 359 HOH HOH . 
G 5 HOH A 51 351 366 HOH HOH . 
G 5 HOH A 52 352 356 HOH HOH . 
G 5 HOH A 53 353 363 HOH HOH . 
G 5 HOH A 54 354 358 HOH HOH . 
G 5 HOH A 55 355 364 HOH HOH . 
G 5 HOH A 56 356 368 HOH HOH . 
G 5 HOH A 57 357 362 HOH HOH . 
G 5 HOH A 58 358 369 HOH HOH . 
G 5 HOH A 59 359 357 HOH HOH . 
G 5 HOH A 60 360 339 HOH HOH . 
G 5 HOH A 61 361 384 HOH HOH . 
G 5 HOH A 62 362 370 HOH HOH . 
G 5 HOH A 63 363 382 HOH HOH . 
G 5 HOH A 64 364 373 HOH HOH . 
G 5 HOH A 65 365 376 HOH HOH . 
G 5 HOH A 66 366 372 HOH HOH . 
G 5 HOH A 67 367 361 HOH HOH . 
G 5 HOH A 68 368 377 HOH HOH . 
G 5 HOH A 69 369 380 HOH HOH . 
G 5 HOH A 70 370 387 HOH HOH . 
G 5 HOH A 71 371 381 HOH HOH . 
G 5 HOH A 72 372 379 HOH HOH . 
G 5 HOH A 73 373 375 HOH HOH . 
G 5 HOH A 74 374 388 HOH HOH . 
G 5 HOH A 75 375 378 HOH HOH . 
G 5 HOH A 76 376 391 HOH HOH . 
G 5 HOH A 77 377 374 HOH HOH . 
G 5 HOH A 78 378 383 HOH HOH . 
G 5 HOH A 79 379 390 HOH HOH . 
G 5 HOH A 80 380 385 HOH HOH . 
G 5 HOH A 81 381 395 HOH HOH . 
G 5 HOH A 82 382 392 HOH HOH . 
G 5 HOH A 83 383 403 HOH HOH . 
G 5 HOH A 84 384 397 HOH HOH . 
G 5 HOH A 85 385 401 HOH HOH . 
G 5 HOH A 86 386 393 HOH HOH . 
G 5 HOH A 87 387 398 HOH HOH . 
G 5 HOH A 88 388 399 HOH HOH . 
G 5 HOH A 89 389 396 HOH HOH . 
G 5 HOH A 90 390 394 HOH HOH . 
G 5 HOH A 91 391 389 HOH HOH . 
G 5 HOH A 92 392 404 HOH HOH . 
G 5 HOH A 93 393 400 HOH HOH . 
G 5 HOH A 94 394 405 HOH HOH . 
G 5 HOH A 95 395 406 HOH HOH . 
G 5 HOH A 96 396 408 HOH HOH . 
G 5 HOH A 97 397 407 HOH HOH . 
G 5 HOH A 98 398 412 HOH HOH . 
G 5 HOH A 99 399 410 HOH HOH . 
G 5 HOH A 100 400 411 HOH HOH . 
G 5 HOH A 101 401 414 HOH HOH . 
G 5 HOH A 102 402 413 HOH HOH . 
G 5 HOH A 103 403 417 HOH HOH . 
G 5 HOH A 104 404 418 HOH HOH . 
G 5 HOH A 105 405 415 HOH HOH . 
G 5 HOH A 106 406 416 HOH HOH . 
G 5 HOH A 107 407 420 HOH HOH . 
G 5 HOH A 108 408 419 HOH HOH . 
G 5 HOH A 109 409 424 HOH HOH . 
G 5 HOH A 110 410 421 HOH HOH . 
G 5 HOH A 111 411 423 HOH HOH . 
G 5 HOH A 112 412 422 HOH HOH . 
G 5 HOH A 113 413 425 HOH HOH . 
G 5 HOH A 114 414 426 HOH HOH . 
G 5 HOH A 115 415 428 HOH HOH . 
G 5 HOH A 116 416 427 HOH HOH . 
G 5 HOH A 117 417 430 HOH HOH . 
G 5 HOH A 118 418 432 HOH HOH . 
G 5 HOH A 119 419 429 HOH HOH . 
G 5 HOH A 120 420 431 HOH HOH . 
G 5 HOH A 121 421 433 HOH HOH . 
G 5 HOH A 122 422 434 HOH HOH . 
G 5 HOH A 123 423 435 HOH HOH . 
G 5 HOH A 124 424 436 HOH HOH . 
G 5 HOH A 125 425 437 HOH HOH . 
G 5 HOH A 126 426 438 HOH HOH . 
G 5 HOH A 127 427 439 HOH HOH . 
G 5 HOH A 128 428 440 HOH HOH . 
H 5 HOH B 1 201 201 HOH HOH . 
H 5 HOH B 2 202 202 HOH HOH . 
H 5 HOH B 3 203 214 HOH HOH . 
H 5 HOH B 4 204 203 HOH HOH . 
H 5 HOH B 5 205 205 HOH HOH . 
H 5 HOH B 6 206 209 HOH HOH . 
H 5 HOH B 7 207 215 HOH HOH . 
H 5 HOH B 8 208 207 HOH HOH . 
H 5 HOH B 9 209 213 HOH HOH . 
H 5 HOH B 10 210 212 HOH HOH . 
H 5 HOH B 11 211 210 HOH HOH . 
H 5 HOH B 12 212 208 HOH HOH . 
H 5 HOH B 13 213 216 HOH HOH . 
H 5 HOH B 14 214 211 HOH HOH . 
H 5 HOH B 15 215 238 HOH HOH . 
H 5 HOH B 16 216 206 HOH HOH . 
H 5 HOH B 17 217 204 HOH HOH . 
H 5 HOH B 18 218 218 HOH HOH . 
H 5 HOH B 19 219 220 HOH HOH . 
H 5 HOH B 20 220 224 HOH HOH . 
H 5 HOH B 21 221 247 HOH HOH . 
H 5 HOH B 22 222 219 HOH HOH . 
H 5 HOH B 23 223 223 HOH HOH . 
H 5 HOH B 24 224 234 HOH HOH . 
H 5 HOH B 25 225 221 HOH HOH . 
H 5 HOH B 26 226 235 HOH HOH . 
H 5 HOH B 27 227 228 HOH HOH . 
H 5 HOH B 28 228 231 HOH HOH . 
H 5 HOH B 29 229 226 HOH HOH . 
H 5 HOH B 30 230 248 HOH HOH . 
H 5 HOH B 31 231 237 HOH HOH . 
H 5 HOH B 32 232 230 HOH HOH . 
H 5 HOH B 33 233 240 HOH HOH . 
H 5 HOH B 34 234 233 HOH HOH . 
H 5 HOH B 35 235 245 HOH HOH . 
H 5 HOH B 36 236 217 HOH HOH . 
H 5 HOH B 37 237 227 HOH HOH . 
H 5 HOH B 38 238 242 HOH HOH . 
H 5 HOH B 39 239 236 HOH HOH . 
H 5 HOH B 40 240 239 HOH HOH . 
H 5 HOH B 41 241 225 HOH HOH . 
H 5 HOH B 42 242 229 HOH HOH . 
H 5 HOH B 43 243 232 HOH HOH . 
H 5 HOH B 44 244 261 HOH HOH . 
H 5 HOH B 45 245 222 HOH HOH . 
H 5 HOH B 46 246 244 HOH HOH . 
H 5 HOH B 47 247 243 HOH HOH . 
H 5 HOH B 48 248 246 HOH HOH . 
H 5 HOH B 49 249 250 HOH HOH . 
H 5 HOH B 50 250 251 HOH HOH . 
H 5 HOH B 51 251 256 HOH HOH . 
H 5 HOH B 52 252 241 HOH HOH . 
H 5 HOH B 53 253 252 HOH HOH . 
H 5 HOH B 54 254 267 HOH HOH . 
H 5 HOH B 55 255 260 HOH HOH . 
H 5 HOH B 56 256 254 HOH HOH . 
H 5 HOH B 57 257 264 HOH HOH . 
H 5 HOH B 58 258 265 HOH HOH . 
H 5 HOH B 59 259 257 HOH HOH . 
H 5 HOH B 60 260 253 HOH HOH . 
H 5 HOH B 61 261 249 HOH HOH . 
H 5 HOH B 62 262 259 HOH HOH . 
H 5 HOH B 63 263 268 HOH HOH . 
H 5 HOH B 64 264 255 HOH HOH . 
H 5 HOH B 65 265 262 HOH HOH . 
H 5 HOH B 66 266 266 HOH HOH . 
H 5 HOH B 67 267 270 HOH HOH . 
H 5 HOH B 68 268 269 HOH HOH . 
H 5 HOH B 69 269 263 HOH HOH . 
H 5 HOH B 70 270 272 HOH HOH . 
H 5 HOH B 71 271 258 HOH HOH . 
H 5 HOH B 72 272 277 HOH HOH . 
H 5 HOH B 73 273 278 HOH HOH . 
H 5 HOH B 74 274 279 HOH HOH . 
H 5 HOH B 75 275 273 HOH HOH . 
H 5 HOH B 76 276 271 HOH HOH . 
H 5 HOH B 77 277 275 HOH HOH . 
H 5 HOH B 78 278 280 HOH HOH . 
H 5 HOH B 79 279 287 HOH HOH . 
H 5 HOH B 80 280 282 HOH HOH . 
H 5 HOH B 81 281 274 HOH HOH . 
H 5 HOH B 82 282 281 HOH HOH . 
H 5 HOH B 83 283 276 HOH HOH . 
H 5 HOH B 84 284 283 HOH HOH . 
H 5 HOH B 85 285 284 HOH HOH . 
H 5 HOH B 86 286 289 HOH HOH . 
H 5 HOH B 87 287 290 HOH HOH . 
H 5 HOH B 88 288 291 HOH HOH . 
H 5 HOH B 89 289 285 HOH HOH . 
H 5 HOH B 90 290 288 HOH HOH . 
H 5 HOH B 91 291 286 HOH HOH . 
H 5 HOH B 92 292 292 HOH HOH . 
H 5 HOH B 93 293 293 HOH HOH . 
H 5 HOH B 94 294 294 HOH HOH . 
H 5 HOH B 95 295 295 HOH HOH . 
H 5 HOH B 96 296 297 HOH HOH . 
H 5 HOH B 97 297 296 HOH HOH . 
H 5 HOH B 98 298 298 HOH HOH . 
H 5 HOH B 99 299 303 HOH HOH . 
H 5 HOH B 100 300 299 HOH HOH . 
H 5 HOH B 101 301 300 HOH HOH . 
H 5 HOH B 102 302 305 HOH HOH . 
H 5 HOH B 103 303 302 HOH HOH . 
H 5 HOH B 104 304 301 HOH HOH . 
H 5 HOH B 105 305 304 HOH HOH . 
H 5 HOH B 106 306 306 HOH HOH . 
H 5 HOH B 107 307 307 HOH HOH . 
H 5 HOH B 108 308 312 HOH HOH . 
H 5 HOH B 109 309 309 HOH HOH . 
H 5 HOH B 110 310 308 HOH HOH . 
H 5 HOH B 111 311 311 HOH HOH . 
H 5 HOH B 112 312 310 HOH HOH . 
H 5 HOH B 113 313 314 HOH HOH . 
H 5 HOH B 114 314 313 HOH HOH . 
H 5 HOH B 115 315 315 HOH HOH . 
H 5 HOH B 116 316 317 HOH HOH . 
H 5 HOH B 117 317 318 HOH HOH . 
H 5 HOH B 118 318 316 HOH HOH . 
H 5 HOH B 119 319 319 HOH HOH . 
H 5 HOH B 120 320 320 HOH HOH . 
H 5 HOH B 121 321 321 HOH HOH . 
H 5 HOH B 122 322 322 HOH HOH . 
I 5 HOH C 1 101 337 HOH HOH . 
I 5 HOH C 2 102 322 HOH HOH . 
I 5 HOH C 3 103 315 HOH HOH . 
I 5 HOH C 4 104 350 HOH HOH . 
I 5 HOH C 5 105 321 HOH HOH . 
I 5 HOH C 6 106 345 HOH HOH . 
I 5 HOH C 7 107 343 HOH HOH . 
I 5 HOH C 8 108 342 HOH HOH . 
I 5 HOH C 9 109 386 HOH HOH . 
I 5 HOH C 10 110 402 HOH HOH . 
I 5 HOH C 11 111 409 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               112.332 
_atom_site.Cartn_y               93.895 
_atom_site.Cartn_z               -7.276 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        124.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#