data_7VAL # _model_server_result.job_id eJxk-ajjl88VBCUkP8ucUg _model_server_result.datetime_utc '2024-12-22 01:20:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7val # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 7VAL # _exptl.entry_id 7VAL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VAL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 P N N ? 10 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 235 A SER 235 1_555 N MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc2 M O2B ADP . A ADP 601 1_555 N MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc3 N MG MG . A MG 602 1_555 O O2 PO4 . A PO4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc4 C OG SER 235 C SER 235 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc5 Q O2G ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc6 Q O1B ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7VAL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 7 ADP A 1 601 601 ADP ADP . N 8 MG A 1 602 602 MG MG . O 9 PO4 A 1 603 603 PO4 PO4 . P 10 ATP B 1 601 601 ATP ATP . Q 10 ATP C 1 601 601 ATP ATP . R 8 MG C 1 602 602 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 10 98.474 135.658 122.69 1 111.71 ? PG ATP 601 B 1 HETATM 2 O O1G ATP . . . P 10 99.468 134.613 122.32 1 111.71 ? O1G ATP 601 B 1 HETATM 3 O O2G ATP . . . P 10 98.404 135.932 124.193 1 111.71 ? O2G ATP 601 B 1 HETATM 4 O O3G ATP . . . P 10 98.666 136.984 121.949 1 111.71 ? O3G ATP 601 B 1 HETATM 5 P PB ATP . . . P 10 95.604 135.812 121.849 1 111.71 ? PB ATP 601 B 1 HETATM 6 O O1B ATP . . . P 10 95.154 136.881 122.761 1 111.71 ? O1B ATP 601 B 1 HETATM 7 O O2B ATP . . . P 10 94.631 134.651 121.667 1 111.71 ? O2B ATP 601 B 1 HETATM 8 O O3B ATP . . . P 10 96.997 135.191 122.298 1 111.71 ? O3B ATP 601 B 1 HETATM 9 P PA ATP . . . P 10 95.933 137.786 119.675 1 111.71 ? PA ATP 601 B 1 HETATM 10 O O1A ATP . . . P 10 97.053 138.635 120.13 1 111.71 ? O1A ATP 601 B 1 HETATM 11 O O2A ATP . . . P 10 94.541 138.382 119.883 1 111.71 ? O2A ATP 601 B 1 HETATM 12 O O3A ATP . . . P 10 95.945 136.373 120.4 1 111.71 ? O3A ATP 601 B 1 HETATM 13 O O5' ATP . . . P 10 96.083 137.403 118.151 1 111.71 ? O5' ATP 601 B 1 HETATM 14 C C5' ATP . . . P 10 95.383 136.272 117.592 1 111.71 ? C5' ATP 601 B 1 HETATM 15 C C4' ATP . . . P 10 94.128 136.754 116.909 1 111.71 ? C4' ATP 601 B 1 HETATM 16 O O4' ATP . . . P 10 93.926 135.99 115.699 1 111.71 ? O4' ATP 601 B 1 HETATM 17 C C3' ATP . . . P 10 92.847 136.595 117.725 1 111.71 ? C3' ATP 601 B 1 HETATM 18 O O3' ATP . . . P 10 92.564 137.778 118.465 1 111.71 ? O3' ATP 601 B 1 HETATM 19 C C2' ATP . . . P 10 91.791 136.331 116.649 1 111.71 ? C2' ATP 601 B 1 HETATM 20 O O2' ATP . . . P 10 91.313 137.536 116.062 1 111.71 ? O2' ATP 601 B 1 HETATM 21 C C1' ATP . . . P 10 92.592 135.524 115.627 1 111.71 ? C1' ATP 601 B 1 HETATM 22 N N9 ATP . . . P 10 92.593 134.084 115.864 1 111.71 ? N9 ATP 601 B 1 HETATM 23 C C8 ATP . . . P 10 93.398 133.383 116.723 1 111.71 ? C8 ATP 601 B 1 HETATM 24 N N7 ATP . . . P 10 93.179 132.091 116.727 1 111.71 ? N7 ATP 601 B 1 HETATM 25 C C5 ATP . . . P 10 92.159 131.929 115.803 1 111.71 ? C5 ATP 601 B 1 HETATM 26 C C6 ATP . . . P 10 91.467 130.793 115.341 1 111.71 ? C6 ATP 601 B 1 HETATM 27 N N6 ATP . . . P 10 91.709 129.549 115.766 1 111.71 ? N6 ATP 601 B 1 HETATM 28 N N1 ATP . . . P 10 90.504 130.979 114.413 1 111.71 ? N1 ATP 601 B 1 HETATM 29 C C2 ATP . . . P 10 90.256 132.218 113.983 1 111.71 ? C2 ATP 601 B 1 HETATM 30 N N3 ATP . . . P 10 90.841 133.362 114.344 1 111.71 ? N3 ATP 601 B 1 HETATM 31 C C4 ATP . . . P 10 91.788 133.149 115.262 1 111.71 ? C4 ATP 601 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 133 _model_server_stats.query_time_ms 559 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #