data_7VAP
#
_model_server_result.job_id            dAjdXhestKNvHm1VU2BNyA 
_model_server_result.datetime_utc      '2024-12-22 07:34:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":601}' 
#
_entry.id    7VAP 
#
_exptl.entry_id    7VAP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VAP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 P N N 
? 10 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 M O2B ADP . A ADP 601 1_555 N MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? 
metalc ? metalc2 N MG MG . A MG 602 1_555 O O2 PO4 . A PO4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc3 C OG SER 235 C SER 235 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc4 Q O2G ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc5 Q O1B ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     7VAP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 7 ADP A 1 601 601 ADP ADP . 
N 8 MG A 1 602 602 MG MG . 
O 9 PO4 A 1 603 603 PO4 PO4 . 
P 10 ATP B 1 601 601 ATP ATP . 
Q 10 ATP C 1 601 601 ATP ATP . 
R 8 MG C 1 602 602 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 10 99.487 133.83 122.797 1 107.02 ? PG ATP 601 B 1 
HETATM 2 O O1G ATP . . . P 10 100.508 132.792 122.483 1 107.02 ? O1G ATP 601 B 1 
HETATM 3 O O2G ATP . . . P 10 99.345 134.118 124.29 1 107.02 ? O2G ATP 601 B 1 
HETATM 4 O O3G ATP . . . P 10 99.706 135.149 122.056 1 107.02 ? O3G ATP 601 B 1 
HETATM 5 P PB ATP . . . P 10 96.635 133.957 121.879 1 107.02 ? PB ATP 601 B 1 
HETATM 6 O O1B ATP . . . P 10 96.163 135.014 122.794 1 107.02 ? O1B ATP 601 B 1 
HETATM 7 O O2B ATP . . . P 10 95.676 132.786 121.674 1 107.02 ? O2B ATP 601 B 1 
HETATM 8 O O3B ATP . . . P 10 98.033 133.347 122.34 1 107.02 ? O3B ATP 601 B 1 
HETATM 9 P PA ATP . . . P 10 97.063 135.956 119.743 1 107.02 ? PA ATP 601 B 1 
HETATM 10 O O1A ATP . . . P 10 98.22 136.737 120.226 1 107.02 ? O1A ATP 601 B 1 
HETATM 11 O O2A ATP . . . P 10 95.7 136.62 119.935 1 107.02 ? O2A ATP 601 B 1 
HETATM 12 O O3A ATP . . . P 10 96.987 134.529 120.437 1 107.02 ? O3A ATP 601 B 1 
HETATM 13 O O5' ATP . . . P 10 97.229 135.589 118.217 1 107.02 ? O5' ATP 601 B 1 
HETATM 14 C C5' ATP . . . P 10 96.598 134.418 117.657 1 107.02 ? C5' ATP 601 B 1 
HETATM 15 C C4' ATP . . . P 10 95.296 134.82 117.014 1 107.02 ? C4' ATP 601 B 1 
HETATM 16 O O4' ATP . . . P 10 95.153 134.122 115.757 1 107.02 ? O4' ATP 601 B 1 
HETATM 17 C C3' ATP . . . P 10 94.043 134.485 117.818 1 107.02 ? C3' ATP 601 B 1 
HETATM 18 O O3' ATP . . . P 10 93.668 135.569 118.66 1 107.02 ? O3' ATP 601 B 1 
HETATM 19 C C2' ATP . . . P 10 93.006 134.233 116.724 1 107.02 ? C2' ATP 601 B 1 
HETATM 20 O O2' ATP . . . P 10 92.466 135.449 116.221 1 107.02 ? O2' ATP 601 B 1 
HETATM 21 C C1' ATP . . . P 10 93.861 133.554 115.655 1 107.02 ? C1' ATP 601 B 1 
HETATM 22 N N9 ATP . . . P 10 93.98 132.11 115.817 1 107.02 ? N9 ATP 601 B 1 
HETATM 23 C C8 ATP . . . P 10 94.95 131.428 116.505 1 107.02 ? C8 ATP 601 B 1 
HETATM 24 N N7 ATP . . . P 10 94.805 130.126 116.485 1 107.02 ? N7 ATP 601 B 1 
HETATM 25 C C5 ATP . . . P 10 93.658 129.936 115.73 1 107.02 ? C5 ATP 601 B 1 
HETATM 26 C C6 ATP . . . P 10 92.964 128.778 115.334 1 107.02 ? C6 ATP 601 B 1 
HETATM 27 N N6 ATP . . . P 10 93.34 127.537 115.659 1 107.02 ? N6 ATP 601 B 1 
HETATM 28 N N1 ATP . . . P 10 91.854 128.938 114.582 1 107.02 ? N1 ATP 601 B 1 
HETATM 29 C C2 ATP . . . P 10 91.472 130.174 114.254 1 107.02 ? C2 ATP 601 B 1 
HETATM 30 N N3 ATP . . . P 10 92.045 131.337 114.568 1 107.02 ? N3 ATP 601 B 1 
HETATM 31 C C4 ATP . . . P 10 93.139 131.149 115.312 1 107.02 ? C4 ATP 601 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    206 
_model_server_stats.query_time_ms           446 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#