data_7VAP # _model_server_result.job_id vpXcgSXHqhaR5aRQxklg8w _model_server_result.datetime_utc '2024-11-08 15:00:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":601}' # _entry.id 7VAP # _exptl.entry_id 7VAP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VAP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 P N N ? 10 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 M O2B ADP . A ADP 601 1_555 N MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc2 N MG MG . A MG 602 1_555 O O2 PO4 . A PO4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 C OG SER 235 C SER 235 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc4 Q O2G ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc5 Q O1B ATP . C ATP 601 1_555 R MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7VAP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 7 ADP A 1 601 601 ADP ADP . N 8 MG A 1 602 602 MG MG . O 9 PO4 A 1 603 603 PO4 PO4 . P 10 ATP B 1 601 601 ATP ATP . Q 10 ATP C 1 601 601 ATP ATP . R 8 MG C 1 602 602 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Q 10 143.619 107.991 127.852 1 62.52 ? PG ATP 601 C 1 HETATM 2 O O1G ATP . . . Q 10 143.542 109.277 128.592 1 62.52 ? O1G ATP 601 C 1 HETATM 3 O O2G ATP . . . Q 10 144.334 106.89 128.62 1 62.52 ? O2G ATP 601 C 1 HETATM 4 O O3G ATP . . . Q 10 142.27 107.469 127.375 1 62.52 ? O3G ATP 601 C 1 HETATM 5 P PB ATP . . . Q 10 145.945 107.972 126.016 1 62.52 ? PB ATP 601 C 1 HETATM 6 O O1B ATP . . . Q 10 146.784 107.356 127.056 1 62.52 ? O1B ATP 601 C 1 HETATM 7 O O2B ATP . . . Q 10 146.418 109.317 125.484 1 62.52 ? O2B ATP 601 C 1 HETATM 8 O O3B ATP . . . Q 10 144.471 108.166 126.526 1 62.52 ? O3B ATP 601 C 1 HETATM 9 P PA ATP . . . Q 10 146.38 105.674 124.235 1 62.52 ? PA ATP 601 C 1 HETATM 10 O O1A ATP . . . Q 10 145.853 104.506 124.964 1 62.52 ? O1A ATP 601 C 1 HETATM 11 O O2A ATP . . . Q 10 147.888 105.843 124.314 1 62.52 ? O2A ATP 601 C 1 HETATM 12 O O3A ATP . . . Q 10 145.743 107.012 124.765 1 62.52 ? O3A ATP 601 C 1 HETATM 13 O O5' ATP . . . Q 10 145.971 105.646 122.711 1 62.52 ? O5' ATP 601 C 1 HETATM 14 C C5' ATP . . . Q 10 144.64 105.274 122.301 1 62.52 ? C5' ATP 601 C 1 HETATM 15 C C4' ATP . . . Q 10 144.727 104.4 121.077 1 62.52 ? C4' ATP 601 C 1 HETATM 16 O O4' ATP . . . Q 10 145.235 105.167 119.966 1 62.52 ? O4' ATP 601 C 1 HETATM 17 C C3' ATP . . . Q 10 145.673 103.214 121.187 1 62.52 ? C3' ATP 601 C 1 HETATM 18 O O3' ATP . . . Q 10 145.039 102.104 121.811 1 62.52 ? O3' ATP 601 C 1 HETATM 19 C C2' ATP . . . Q 10 145.994 102.93 119.721 1 62.52 ? C2' ATP 601 C 1 HETATM 20 O O2' ATP . . . Q 10 144.957 102.179 119.103 1 62.52 ? O2' ATP 601 C 1 HETATM 21 C C1' ATP . . . Q 10 146.038 104.344 119.136 1 62.52 ? C1' ATP 601 C 1 HETATM 22 N N9 ATP . . . Q 10 147.376 104.918 119.073 1 62.52 ? N9 ATP 601 C 1 HETATM 23 C C8 ATP . . . Q 10 147.886 105.906 119.871 1 62.52 ? C8 ATP 601 C 1 HETATM 24 N N7 ATP . . . Q 10 149.125 106.231 119.594 1 62.52 ? N7 ATP 601 C 1 HETATM 25 C C5 ATP . . . Q 10 149.453 105.398 118.536 1 62.52 ? C5 ATP 601 C 1 HETATM 26 C C6 ATP . . . Q 10 150.628 105.244 117.778 1 62.52 ? C6 ATP 601 C 1 HETATM 27 N N6 ATP . . . Q 10 151.741 105.956 117.977 1 62.52 ? N6 ATP 601 C 1 HETATM 28 N N1 ATP . . . Q 10 150.624 104.321 116.794 1 62.52 ? N1 ATP 601 C 1 HETATM 29 C C2 ATP . . . Q 10 149.517 103.605 116.59 1 62.52 ? C2 ATP 601 C 1 HETATM 30 N N3 ATP . . . Q 10 148.352 103.662 117.238 1 62.52 ? N3 ATP 601 C 1 HETATM 31 C C4 ATP . . . Q 10 148.385 104.583 118.205 1 62.52 ? C4 ATP 601 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #