data_7VB9
#
_model_server_result.job_id            EFl0PLojAMF9fxfafZFM1A 
_model_server_result.datetime_utc      '2024-11-15 03:11:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vb9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VC","auth_seq_id":402}' 
#
_entry.id    7VB9 
#
_exptl.entry_id    7VB9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VB9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VB9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    51-meric 
_pdbx_struct_assembly.oligomeric_count      51 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 FB N N 
? 10 VC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 191 L HIS 190 1_555 FB FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc2 B NE2 HIS 220 M HIS 219 1_555 FB FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc3 B OE1 GLU 235 M GLU 234 1_555 FB FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc4 B OE2 GLU 235 M GLU 234 1_555 FB FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc5 B NE2 HIS 267 M HIS 266 1_555 FB FE FE2 . M FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc6 T NE2 HIS 191 l HIS 190 1_555 VC FE FE2 . m FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc7 T NE2 HIS 231 l HIS 230 1_555 VC FE FE2 . m FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc8 U NE2 HIS 220 m HIS 219 1_555 VC FE FE2 . m FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc9 U OE1 GLU 235 m GLU 234 1_555 VC FE FE2 . m FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc10 U OE2 GLU 235 m GLU 234 1_555 VC FE FE2 . m FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc11 U NE2 HIS 267 m HIS 266 1_555 VC FE FE2 . m FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
#
_chem_comp.formula           'Fe 2' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VB9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
ZA 7 BCL L 1 301 852 BCL BCL . 
AB 7 BCL L 1 302 854 BCL BCL . 
BB 8 BPH L 1 303 856 BPH BPH . 
CB 9 U10 L 1 304 1001 U10 U10 . 
DB 7 BCL L 1 305 402 BCL BCL . 
EB 8 BPH L 1 306 855 BPH BPH . 
FB 10 FE2 M 1 401 857 FE2 FE2 . 
GB 7 BCL M 1 402 853 BCL BCL . 
HB 9 U10 M 1 403 858 U10 U10 . 
IB 11 SPO M 1 404 1310 SPO SPO . 
JB 12 PC1 H 1 601 601 PC1 PC1 . 
KB 12 PC1 H 1 602 801 PC1 PC1 . 
LB 12 PC1 A 1 1701 1701 PC1 PC1 . 
MB 7 BCL A 1 1702 101 BCL BCL . 
NB 12 PC1 A 1 1703 601 PC1 PC1 . 
OB 7 BCL B 1 101 101 BCL BCL . 
PB 7 BCL D 1 101 101 BCL BCL . 
QB 11 SPO D 1 102 104 SPO SPO . 
RB 7 BCL E 1 101 101 BCL BCL . 
SB 11 SPO E 1 102 105 SPO SPO . 
TB 7 BCL F 1 101 101 BCL BCL . 
UB 11 SPO F 1 102 104 SPO SPO . 
VB 11 SPO F 1 103 104 SPO SPO . 
WB 7 BCL G 1 101 101 BCL BCL . 
XB 11 SPO G 1 102 105 SPO SPO . 
YB 11 SPO G 1 103 105 SPO SPO . 
ZB 7 BCL I 1 101 101 BCL BCL . 
AC 7 BCL J 1 101 101 BCL BCL . 
BC 11 SPO J 1 102 105 SPO SPO . 
CC 7 BCL K 1 101 101 BCL BCL . 
DC 7 BCL N 1 101 101 BCL BCL . 
EC 7 BCL O 1 101 101 BCL BCL . 
FC 7 BCL 8 1 101 101 BCL BCL . 
GC 11 SPO 9 1 101 104 SPO SPO . 
HC 7 BCL 9 1 102 101 BCL BCL . 
IC 11 SPO 9 1 103 104 SPO SPO . 
JC 11 SPO 0 1 101 105 SPO SPO . 
KC 7 BCL 0 1 102 101 BCL BCL . 
LC 11 SPO 0 1 103 105 SPO SPO . 
MC 12 PC1 C 1 1201 1201 PC1 PC1 . 
NC 7 BCL C 1 1202 101 BCL BCL . 
OC 11 SPO C 1 1203 104 SPO SPO . 
PC 7 BCL l 1 301 852 BCL BCL . 
QC 8 BPH l 1 302 856 BPH BPH . 
RC 9 U10 l 1 303 1001 U10 U10 . 
SC 7 BCL l 1 304 402 BCL BCL . 
TC 8 BPH l 1 305 855 BPH BPH . 
UC 7 BCL m 1 401 854 BCL BCL . 
VC 10 FE2 m 1 402 857 FE2 FE2 . 
WC 7 BCL m 1 403 853 BCL BCL . 
XC 9 U10 m 1 404 858 U10 U10 . 
YC 11 SPO m 1 405 1310 SPO SPO . 
ZC 13 CDL m 1 406 1601 CDL CDL . 
AD 12 PC1 h 1 301 301 PC1 PC1 . 
BD 7 BCL a 1 101 101 BCL BCL . 
CD 12 PC1 a 1 102 501 PC1 PC1 . 
DD 11 SPO b 1 101 104 SPO SPO . 
ED 7 BCL b 1 102 101 BCL BCL . 
FD 11 SPO b 1 103 105 SPO SPO . 
GD 7 BCL d 1 101 101 BCL BCL . 
HD 11 SPO d 1 102 104 SPO SPO . 
ID 11 SPO d 1 103 105 SPO SPO . 
JD 7 BCL e 1 101 101 BCL BCL . 
KD 11 SPO e 1 102 105 SPO SPO . 
LD 7 BCL f 1 101 101 BCL BCL . 
MD 11 SPO f 1 102 104 SPO SPO . 
ND 11 SPO g 1 101 104 SPO SPO . 
OD 7 BCL g 1 102 101 BCL BCL . 
PD 7 BCL i 1 101 101 BCL BCL . 
QD 7 BCL i 1 102 101 BCL BCL . 
RD 11 SPO i 1 103 104 SPO SPO . 
SD 11 SPO j 1 101 105 SPO SPO . 
TD 7 BCL k 1 101 101 BCL BCL . 
UD 7 BCL n 1 101 101 BCL BCL . 
VD 11 SPO n 1 102 105 SPO SPO . 
WD 7 BCL o 1 101 101 BCL BCL . 
XD 11 SPO o 1 102 104 SPO SPO . 
YD 7 BCL p 1 101 101 BCL BCL . 
ZD 11 SPO p 1 102 105 SPO SPO . 
AE 11 SPO p 1 103 105 SPO SPO . 
BE 7 BCL q 1 101 101 BCL BCL . 
CE 11 SPO q 1 102 104 SPO SPO . 
DE 7 BCL q 1 103 101 BCL BCL . 
EE 7 BCL r 1 101 101 BCL BCL . 
FE 11 SPO s 1 101 104 SPO SPO . 
GE 7 BCL s 1 102 101 BCL BCL . 
HE 7 BCL t 1 101 101 BCL BCL . 
IE 11 SPO t 1 102 105 SPO SPO . 
JE 11 SPO u 1 101 104 SPO SPO . 
KE 7 BCL v 1 101 101 BCL BCL . 
LE 11 SPO v 1 102 105 SPO SPO . 
ME 7 BCL w 1 101 101 BCL BCL . 
NE 11 SPO w 1 102 105 SPO SPO . 
OE 7 BCL x 1 101 101 BCL BCL . 
PE 7 BCL y 1 101 101 BCL BCL . 
QE 7 BCL z 1 101 101 BCL BCL . 
RE 7 BCL 5 1 101 101 BCL BCL . 
SE 7 BCL 4 1 101 101 BCL BCL . 
TE 11 SPO aa 1 101 104 SPO SPO . 
UE 7 BCL aa 1 102 101 BCL BCL . 
VE 12 PC1 Q 1 601 601 PC1 PC1 . 
WE 7 BCL Q 1 602 101 BCL BCL . 
XE 11 SPO Q 1 603 104 SPO SPO . 
YE 7 BCL ab 1 101 101 BCL BCL . 
ZE 11 SPO ab 1 102 105 SPO SPO . 
AF 12 PC1 c 1 1201 1201 PC1 PC1 . 
BF 7 BCL c 1 1202 101 BCL BCL . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE2 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         VC 
_atom_site.label_entity_id       10 
_atom_site.Cartn_x               110.201 
_atom_site.Cartn_y               138.347 
_atom_site.Cartn_z               127.442 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.41 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE2 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          m 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#