data_7VBH # _model_server_result.job_id 15txt80S9VU-AKtydzPm1g _model_server_result.datetime_utc '2024-12-21 11:39:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 7VBH # _exptl.entry_id 7VBH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 385.538 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-hexadecanoyl-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VBH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 24 N CYS 22 1_555 B SG CYS 98 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 101 N CYS 99 1_555 B SG CYS 109 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 D SG CYS 23 R CYS 46 1_555 D SG CYS 48 R CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 D SG CYS 39 R CYS 62 1_555 D SG CYS 81 R CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 D SG CYS 62 R CYS 85 1_555 D SG CYS 103 R CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 D SG CYS 203 R CYS 226 1_555 D SG CYS 273 R CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C C HIS 1 P HIS 1 1_555 C N AIB 2 P AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 C C AIB 2 P AIB 2 1_555 C N GLN 3 P GLN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C NZ LYS 10 P LYS 10 1_555 G C07 D6M . P D6M 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? # _chem_comp.formula 'C21 H39 N O5' _chem_comp.formula_weight 385.538 _chem_comp.id D6M _chem_comp.mon_nstd_flag . _chem_comp.name 'N-hexadecanoyl-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VBH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 7 _pdbx_nonpoly_scheme.mon_id D6M _pdbx_nonpoly_scheme.pdb_strand_id P _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id D6M _pdbx_nonpoly_scheme.auth_mon_id D6M _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 D6M . . . G 7 170.353 148.052 122.569 1 12.07 ? O01 D6M 501 P 1 HETATM 2 C C02 D6M . . . G 7 170.403 148.909 121.698 1 12.07 ? C02 D6M 501 P 1 HETATM 3 N N03 D6M . . . G 7 169.492 148.998 120.73 1 12.07 ? N03 D6M 501 P 1 HETATM 4 C C04 D6M . . . G 7 168.209 149.628 120.887 1 12.07 ? C04 D6M 501 P 1 HETATM 5 C C05 D6M . . . G 7 168.041 150.445 119.658 1 12.07 ? C05 D6M 501 P 1 HETATM 6 C C06 D6M . . . G 7 169.102 151.522 119.711 1 12.07 ? C06 D6M 501 P 1 HETATM 7 C C07 D6M . . . G 7 168.303 152.84 119.964 1 12.07 ? C07 D6M 501 P 1 HETATM 8 O O08 D6M . . . G 7 169.083 153.69 119.949 1 12.07 ? O08 D6M 501 P 1 HETATM 9 C C09 D6M . . . G 7 166.968 148.791 121.155 1 12.07 ? C09 D6M 501 P 1 HETATM 10 O O10 D6M . . . G 7 165.924 149.249 120.694 1 12.07 ? O10 D6M 501 P 1 HETATM 11 O O11 D6M . . . G 7 166.92 147.745 121.835 1 12.07 ? O11 D6M 501 P 1 HETATM 12 C C12 D6M . . . G 7 171.724 150.124 121.675 1 12.07 ? C12 D6M 501 P 1 HETATM 13 C C13 D6M . . . G 7 172.899 149.627 122.459 1 12.07 ? C13 D6M 501 P 1 HETATM 14 C C14 D6M . . . G 7 172.948 150.109 123.892 1 12.07 ? C14 D6M 501 P 1 HETATM 15 C C15 D6M . . . G 7 172.566 149.177 125.07 1 12.07 ? C15 D6M 501 P 1 HETATM 16 C C16 D6M . . . G 7 172.422 150.089 126.282 1 12.07 ? C16 D6M 501 P 1 HETATM 17 C C17 D6M . . . G 7 172.621 149.468 127.649 1 12.07 ? C17 D6M 501 P 1 HETATM 18 C C18 D6M . . . G 7 171.29 148.981 128.204 1 12.07 ? C18 D6M 501 P 1 HETATM 19 C C19 D6M . . . G 7 171.378 149.267 129.664 1 12.07 ? C19 D6M 501 P 1 HETATM 20 C C20 D6M . . . G 7 172.652 148.637 130.132 1 12.07 ? C20 D6M 501 P 1 HETATM 21 C C21 D6M . . . G 7 172.585 148.627 131.619 1 12.07 ? C21 D6M 501 P 1 HETATM 22 C C22 D6M . . . G 7 171.237 148.142 132.044 1 12.07 ? C22 D6M 501 P 1 HETATM 23 C C23 D6M . . . G 7 171.473 147.862 133.489 1 12.07 ? C23 D6M 501 P 1 HETATM 24 C C24 D6M . . . G 7 170.197 147.978 134.219 1 12.07 ? C24 D6M 501 P 1 HETATM 25 C C25 D6M . . . G 7 170.546 148.788 135.399 1 12.07 ? C25 D6M 501 P 1 HETATM 26 C C26 D6M . . . G 7 169.804 148.119 136.494 1 12.07 ? C26 D6M 501 P 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #