data_7VBS # _model_server_result.job_id fBSUvLNf-chcg39sBe5A0A _model_server_result.datetime_utc '2024-10-10 11:19:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7VBS # _exptl.entry_id 7VBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VBS _cell.length_a 108.678 _cell.length_b 108.678 _cell.length_c 40.375 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 7VBS _atom_sites.fract_transf_matrix[1][1] 0.009201 _atom_sites.fract_transf_matrix[1][2] 0.005312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 3 HOH A 1 601 50 HOH HOH . C 3 HOH A 2 602 149 HOH HOH . C 3 HOH A 3 603 120 HOH HOH . C 3 HOH A 4 604 70 HOH HOH . C 3 HOH A 5 605 82 HOH HOH . C 3 HOH A 6 606 23 HOH HOH . C 3 HOH A 7 607 135 HOH HOH . C 3 HOH A 8 608 97 HOH HOH . C 3 HOH A 9 609 13 HOH HOH . C 3 HOH A 10 610 72 HOH HOH . C 3 HOH A 11 611 62 HOH HOH . C 3 HOH A 12 612 61 HOH HOH . C 3 HOH A 13 613 9 HOH HOH . C 3 HOH A 14 614 47 HOH HOH . C 3 HOH A 15 615 84 HOH HOH . C 3 HOH A 16 616 91 HOH HOH . C 3 HOH A 17 617 71 HOH HOH . C 3 HOH A 18 618 41 HOH HOH . C 3 HOH A 19 619 96 HOH HOH . C 3 HOH A 20 620 68 HOH HOH . C 3 HOH A 21 621 37 HOH HOH . C 3 HOH A 22 622 54 HOH HOH . C 3 HOH A 23 623 55 HOH HOH . C 3 HOH A 24 624 119 HOH HOH . C 3 HOH A 25 625 117 HOH HOH . C 3 HOH A 26 626 80 HOH HOH . C 3 HOH A 27 627 12 HOH HOH . C 3 HOH A 28 628 42 HOH HOH . C 3 HOH A 29 629 18 HOH HOH . C 3 HOH A 30 630 33 HOH HOH . C 3 HOH A 31 631 132 HOH HOH . C 3 HOH A 32 632 148 HOH HOH . C 3 HOH A 33 633 31 HOH HOH . C 3 HOH A 34 634 99 HOH HOH . C 3 HOH A 35 635 65 HOH HOH . C 3 HOH A 36 636 127 HOH HOH . C 3 HOH A 37 637 53 HOH HOH . C 3 HOH A 38 638 126 HOH HOH . C 3 HOH A 39 639 7 HOH HOH . C 3 HOH A 40 640 128 HOH HOH . C 3 HOH A 41 641 22 HOH HOH . C 3 HOH A 42 642 46 HOH HOH . C 3 HOH A 43 643 105 HOH HOH . C 3 HOH A 44 644 108 HOH HOH . C 3 HOH A 45 645 107 HOH HOH . C 3 HOH A 46 646 86 HOH HOH . C 3 HOH A 47 647 111 HOH HOH . C 3 HOH A 48 648 3 HOH HOH . C 3 HOH A 49 649 114 HOH HOH . C 3 HOH A 50 650 74 HOH HOH . C 3 HOH A 51 651 77 HOH HOH . C 3 HOH A 52 652 48 HOH HOH . C 3 HOH A 53 653 121 HOH HOH . C 3 HOH A 54 654 115 HOH HOH . C 3 HOH A 55 655 142 HOH HOH . C 3 HOH A 56 656 43 HOH HOH . C 3 HOH A 57 657 36 HOH HOH . C 3 HOH A 58 658 16 HOH HOH . C 3 HOH A 59 659 14 HOH HOH . C 3 HOH A 60 660 116 HOH HOH . C 3 HOH A 61 661 19 HOH HOH . C 3 HOH A 62 662 38 HOH HOH . C 3 HOH A 63 663 34 HOH HOH . C 3 HOH A 64 664 20 HOH HOH . C 3 HOH A 65 665 146 HOH HOH . C 3 HOH A 66 666 27 HOH HOH . C 3 HOH A 67 667 21 HOH HOH . C 3 HOH A 68 668 5 HOH HOH . C 3 HOH A 69 669 29 HOH HOH . C 3 HOH A 70 670 67 HOH HOH . C 3 HOH A 71 671 1 HOH HOH . C 3 HOH A 72 672 24 HOH HOH . C 3 HOH A 73 673 8 HOH HOH . C 3 HOH A 74 674 134 HOH HOH . C 3 HOH A 75 675 35 HOH HOH . C 3 HOH A 76 676 56 HOH HOH . C 3 HOH A 77 677 60 HOH HOH . C 3 HOH A 78 678 89 HOH HOH . C 3 HOH A 79 679 101 HOH HOH . C 3 HOH A 80 680 87 HOH HOH . C 3 HOH A 81 681 39 HOH HOH . C 3 HOH A 82 682 10 HOH HOH . C 3 HOH A 83 683 15 HOH HOH . C 3 HOH A 84 684 32 HOH HOH . C 3 HOH A 85 685 125 HOH HOH . C 3 HOH A 86 686 58 HOH HOH . C 3 HOH A 87 687 57 HOH HOH . C 3 HOH A 88 688 30 HOH HOH . C 3 HOH A 89 689 144 HOH HOH . C 3 HOH A 90 690 118 HOH HOH . C 3 HOH A 91 691 26 HOH HOH . C 3 HOH A 92 692 92 HOH HOH . C 3 HOH A 93 693 11 HOH HOH . C 3 HOH A 94 694 2 HOH HOH . C 3 HOH A 95 695 133 HOH HOH . C 3 HOH A 96 696 110 HOH HOH . C 3 HOH A 97 697 104 HOH HOH . C 3 HOH A 98 698 90 HOH HOH . C 3 HOH A 99 699 25 HOH HOH . C 3 HOH A 100 700 138 HOH HOH . C 3 HOH A 101 701 51 HOH HOH . C 3 HOH A 102 702 95 HOH HOH . C 3 HOH A 103 703 44 HOH HOH . C 3 HOH A 104 704 124 HOH HOH . C 3 HOH A 105 705 103 HOH HOH . C 3 HOH A 106 706 93 HOH HOH . C 3 HOH A 107 707 6 HOH HOH . C 3 HOH A 108 708 137 HOH HOH . C 3 HOH A 109 709 17 HOH HOH . C 3 HOH A 110 710 112 HOH HOH . C 3 HOH A 111 711 81 HOH HOH . C 3 HOH A 112 712 122 HOH HOH . C 3 HOH A 113 713 98 HOH HOH . C 3 HOH A 114 714 141 HOH HOH . C 3 HOH A 115 715 79 HOH HOH . C 3 HOH A 116 716 106 HOH HOH . C 3 HOH A 117 717 157 HOH HOH . C 3 HOH A 118 718 147 HOH HOH . C 3 HOH A 119 719 78 HOH HOH . C 3 HOH A 120 720 63 HOH HOH . C 3 HOH A 121 721 123 HOH HOH . C 3 HOH A 122 722 100 HOH HOH . C 3 HOH A 123 723 150 HOH HOH . C 3 HOH A 124 724 143 HOH HOH . C 3 HOH A 125 725 131 HOH HOH . C 3 HOH A 126 726 152 HOH HOH . C 3 HOH A 127 727 145 HOH HOH . C 3 HOH A 128 728 69 HOH HOH . C 3 HOH A 129 729 4 HOH HOH . C 3 HOH A 130 730 113 HOH HOH . C 3 HOH A 131 731 140 HOH HOH . C 3 HOH A 132 732 59 HOH HOH . C 3 HOH A 133 733 153 HOH HOH . C 3 HOH A 134 734 88 HOH HOH . C 3 HOH A 135 735 102 HOH HOH . C 3 HOH A 136 736 40 HOH HOH . C 3 HOH A 137 737 76 HOH HOH . C 3 HOH A 138 738 154 HOH HOH . C 3 HOH A 139 739 109 HOH HOH . C 3 HOH A 140 740 136 HOH HOH . C 3 HOH A 141 741 64 HOH HOH . C 3 HOH A 142 742 139 HOH HOH . C 3 HOH A 143 743 49 HOH HOH . C 3 HOH A 144 744 151 HOH HOH . C 3 HOH A 145 745 45 HOH HOH . C 3 HOH A 146 746 28 HOH HOH . C 3 HOH A 147 747 52 HOH HOH . C 3 HOH A 148 748 83 HOH HOH . C 3 HOH A 149 749 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 0.942 -32.851 4.413 1 48.5 ? P PO4 501 A 1 HETATM 2 O O1 PO4 . . . B 2 0.072 -32.266 3.323 1 48.79 ? O1 PO4 501 A 1 HETATM 3 O O2 PO4 . . . B 2 0.073 -33.411 5.513 1 42.02 ? O2 PO4 501 A 1 HETATM 4 O O3 PO4 . . . B 2 1.835 -31.773 4.981 1 45.21 ? O3 PO4 501 A 1 HETATM 5 O O4 PO4 . . . B 2 1.79 -33.956 3.833 1 47.52 ? O4 PO4 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #