data_7VBW # _model_server_result.job_id 97rtpeCvrULcsYPhkTahAA _model_server_result.datetime_utc '2024-10-10 11:18:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7VBW # _exptl.entry_id 7VBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VBW _cell.length_a 107.574 _cell.length_b 107.574 _cell.length_c 40.436 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 238 A ASP 236 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc2 B O3G GTP . A GTP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc3 C MG MG . A MG 502 1_555 D O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VBW _atom_sites.fract_transf_matrix[1][1] 0.009296 _atom_sites.fract_transf_matrix[1][2] 0.005367 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 501 401 GTP GTP . C 3 MG A 1 502 1 MG MG . D 4 HOH A 1 601 29 HOH HOH . D 4 HOH A 2 602 43 HOH HOH . D 4 HOH A 3 603 37 HOH HOH . D 4 HOH A 4 604 71 HOH HOH . D 4 HOH A 5 605 16 HOH HOH . D 4 HOH A 6 606 60 HOH HOH . D 4 HOH A 7 607 59 HOH HOH . D 4 HOH A 8 608 25 HOH HOH . D 4 HOH A 9 609 51 HOH HOH . D 4 HOH A 10 610 32 HOH HOH . D 4 HOH A 11 611 5 HOH HOH . D 4 HOH A 12 612 3 HOH HOH . D 4 HOH A 13 613 70 HOH HOH . D 4 HOH A 14 614 45 HOH HOH . D 4 HOH A 15 615 55 HOH HOH . D 4 HOH A 16 616 28 HOH HOH . D 4 HOH A 17 617 27 HOH HOH . D 4 HOH A 18 618 69 HOH HOH . D 4 HOH A 19 619 17 HOH HOH . D 4 HOH A 20 620 23 HOH HOH . D 4 HOH A 21 621 4 HOH HOH . D 4 HOH A 22 622 21 HOH HOH . D 4 HOH A 23 623 11 HOH HOH . D 4 HOH A 24 624 68 HOH HOH . D 4 HOH A 25 625 2 HOH HOH . D 4 HOH A 26 626 20 HOH HOH . D 4 HOH A 27 627 1 HOH HOH . D 4 HOH A 28 628 40 HOH HOH . D 4 HOH A 29 629 6 HOH HOH . D 4 HOH A 30 630 61 HOH HOH . D 4 HOH A 31 631 47 HOH HOH . D 4 HOH A 32 632 22 HOH HOH . D 4 HOH A 33 633 48 HOH HOH . D 4 HOH A 34 634 18 HOH HOH . D 4 HOH A 35 635 50 HOH HOH . D 4 HOH A 36 636 49 HOH HOH . D 4 HOH A 37 637 9 HOH HOH . D 4 HOH A 38 638 7 HOH HOH . D 4 HOH A 39 639 8 HOH HOH . D 4 HOH A 40 640 30 HOH HOH . D 4 HOH A 41 641 14 HOH HOH . D 4 HOH A 42 642 34 HOH HOH . D 4 HOH A 43 643 10 HOH HOH . D 4 HOH A 44 644 58 HOH HOH . D 4 HOH A 45 645 67 HOH HOH . D 4 HOH A 46 646 15 HOH HOH . D 4 HOH A 47 647 52 HOH HOH . D 4 HOH A 48 648 53 HOH HOH . D 4 HOH A 49 649 57 HOH HOH . D 4 HOH A 50 650 26 HOH HOH . D 4 HOH A 51 651 65 HOH HOH . D 4 HOH A 52 652 36 HOH HOH . D 4 HOH A 53 653 35 HOH HOH . D 4 HOH A 54 654 31 HOH HOH . D 4 HOH A 55 655 46 HOH HOH . D 4 HOH A 56 656 63 HOH HOH . D 4 HOH A 57 657 62 HOH HOH . D 4 HOH A 58 658 54 HOH HOH . D 4 HOH A 59 659 33 HOH HOH . D 4 HOH A 60 660 24 HOH HOH . D 4 HOH A 61 661 42 HOH HOH . D 4 HOH A 62 662 44 HOH HOH . D 4 HOH A 63 663 19 HOH HOH . D 4 HOH A 64 664 39 HOH HOH . D 4 HOH A 65 665 12 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 38 HOH HOH . D 4 HOH A 68 668 41 HOH HOH . D 4 HOH A 69 669 64 HOH HOH . D 4 HOH A 70 670 13 HOH HOH . D 4 HOH A 71 671 56 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.565 _atom_site.Cartn_y -15.304 _atom_site.Cartn_z -0.826 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #