data_7VBX # _model_server_result.job_id UWitOmi55BUpnXl-cvF9xw _model_server_result.datetime_utc '2024-12-23 17:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7VBX # _exptl.entry_id 7VBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.626 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{S})-3-[5-(8-cyclopropyl-2-methyl-9~{H}-pyrido[2,3-b]indol-3-yl)-1,3,4-oxadiazol-2-yl]-4-methyl-~{N}-[(1~{R})-1-phenylethyl]pentanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7VBX _cell.length_a 109.155 _cell.length_b 109.155 _cell.length_c 84.359 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 54.5775 94.531003 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H33 N5 O2' _chem_comp.formula_weight 507.626 _chem_comp.id 5ZP _chem_comp.mon_nstd_flag . _chem_comp.name (3~{S})-3-[5-(8-cyclopropyl-2-methyl-9~{H}-pyrido[2,3-b]indol-3-yl)-1,3,4-oxadiazol-2-yl]-4-methyl-~{N}-[(1~{R})-1-phenylethyl]pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 5ZP sing 1 n n C15 C14 5ZP sing 2 n n C16 C14 5ZP sing 3 n n C14 C4 5ZP sing 4 n n N1 C8 5ZP sing 5 n y N1 C3 5ZP sing 6 n y N13 C8 5ZP doub 7 n y N13 C12 5ZP sing 8 n y C36 C37 5ZP doub 9 n y C36 C35 5ZP sing 10 n y C18 C12 5ZP sing 11 n n C8 C9 5ZP sing 12 n y C4 C3 5ZP sing 13 n y C4 C5 5ZP doub 14 n y C37 C38 5ZP sing 15 n y C12 C11 5ZP doub 16 n y C35 C34 5ZP doub 17 n y C3 C2 5ZP doub 18 n y C5 C6 5ZP sing 19 n y C9 C2 5ZP sing 20 n y C9 C10 5ZP doub 21 n y C2 C7 5ZP sing 22 n y C38 C33 5ZP doub 23 n y C11 C10 5ZP sing 24 n y C11 C17 5ZP sing 25 n n C34 C33 5ZP sing 26 n y N22 C17 5ZP doub 27 n y N22 N21 5ZP sing 28 n y C33 C29 5ZP sing 29 n n C6 C7 5ZP doub 30 n y C17 O19 5ZP sing 31 n y N21 C20 5ZP doub 32 n y C29 C32 5ZP sing 33 n n C29 N28 5ZP sing 34 n n O19 C20 5ZP sing 35 n y C20 C23 5ZP sing 36 n n N28 C26 5ZP sing 37 n n C26 O27 5ZP doub 38 n n C26 C24 5ZP sing 39 n n C23 C24 5ZP sing 40 n n C23 C25 5ZP sing 41 n n C31 C25 5ZP sing 42 n n C25 C30 5ZP sing 43 n n C5 H1 5ZP sing 44 n n C6 H2 5ZP sing 45 n n N1 H3 5ZP sing 46 n n C7 H4 5ZP sing 47 n n C10 H5 5ZP sing 48 n n C14 H6 5ZP sing 49 n n C15 H7 5ZP sing 50 n n C15 H8 5ZP sing 51 n n C16 H9 5ZP sing 52 n n C16 H10 5ZP sing 53 n n C18 H11 5ZP sing 54 n n C18 H12 5ZP sing 55 n n C18 H13 5ZP sing 56 n n C23 H14 5ZP sing 57 n n C24 H15 5ZP sing 58 n n C24 H16 5ZP sing 59 n n C25 H17 5ZP sing 60 n n C29 H18 5ZP sing 61 n n C30 H19 5ZP sing 62 n n C30 H20 5ZP sing 63 n n C30 H21 5ZP sing 64 n n C31 H22 5ZP sing 65 n n C31 H23 5ZP sing 66 n n C31 H24 5ZP sing 67 n n C32 H25 5ZP sing 68 n n C32 H26 5ZP sing 69 n n C32 H27 5ZP sing 70 n n C34 H28 5ZP sing 71 n n C35 H29 5ZP sing 72 n n C36 H30 5ZP sing 73 n n C37 H31 5ZP sing 74 n n C38 H32 5ZP sing 75 n n N28 H33 5ZP sing 76 n n # _atom_sites.entry_id 7VBX _atom_sites.fract_transf_matrix[1][1] 0.009161 _atom_sites.fract_transf_matrix[1][2] 0.005289 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 1000 CL CL . C 3 ACT A 1 502 2001 ACT ACT . D 4 DMS A 1 503 2100 DMS DMS . E 4 DMS A 1 504 2101 DMS DMS . F 5 5ZP A 1 505 5000 5ZP MOL . G 6 HOH A 1 601 54 HOH HOH . G 6 HOH A 2 602 2 HOH HOH . G 6 HOH A 3 603 53 HOH HOH . G 6 HOH A 4 604 1 HOH HOH . G 6 HOH A 5 605 51 HOH HOH . G 6 HOH A 6 606 11 HOH HOH . G 6 HOH A 7 607 56 HOH HOH . G 6 HOH A 8 608 7 HOH HOH . G 6 HOH A 9 609 9 HOH HOH . G 6 HOH A 10 610 32 HOH HOH . G 6 HOH A 11 611 48 HOH HOH . G 6 HOH A 12 612 6 HOH HOH . G 6 HOH A 13 613 13 HOH HOH . G 6 HOH A 14 614 20 HOH HOH . G 6 HOH A 15 615 19 HOH HOH . G 6 HOH A 16 616 44 HOH HOH . G 6 HOH A 17 617 4 HOH HOH . G 6 HOH A 18 618 45 HOH HOH . G 6 HOH A 19 619 26 HOH HOH . G 6 HOH A 20 620 21 HOH HOH . G 6 HOH A 21 621 17 HOH HOH . G 6 HOH A 22 622 30 HOH HOH . G 6 HOH A 23 623 16 HOH HOH . G 6 HOH A 24 624 8 HOH HOH . G 6 HOH A 25 625 3 HOH HOH . G 6 HOH A 26 626 33 HOH HOH . G 6 HOH A 27 627 12 HOH HOH . G 6 HOH A 28 628 27 HOH HOH . G 6 HOH A 29 629 25 HOH HOH . G 6 HOH A 30 630 43 HOH HOH . G 6 HOH A 31 631 36 HOH HOH . G 6 HOH A 32 632 34 HOH HOH . G 6 HOH A 33 633 40 HOH HOH . G 6 HOH A 34 634 10 HOH HOH . G 6 HOH A 35 635 31 HOH HOH . G 6 HOH A 36 636 39 HOH HOH . G 6 HOH A 37 637 35 HOH HOH . G 6 HOH A 38 638 24 HOH HOH . G 6 HOH A 39 639 29 HOH HOH . G 6 HOH A 40 640 28 HOH HOH . G 6 HOH A 41 641 23 HOH HOH . G 6 HOH A 42 642 38 HOH HOH . G 6 HOH A 43 643 5 HOH HOH . G 6 HOH A 44 644 37 HOH HOH . G 6 HOH A 45 645 55 HOH HOH . G 6 HOH A 46 646 14 HOH HOH . G 6 HOH A 47 647 22 HOH HOH . G 6 HOH A 48 648 15 HOH HOH . G 6 HOH A 49 649 49 HOH HOH . G 6 HOH A 50 650 18 HOH HOH . G 6 HOH A 51 651 47 HOH HOH . G 6 HOH A 52 652 50 HOH HOH . G 6 HOH A 53 653 46 HOH HOH . G 6 HOH A 54 654 52 HOH HOH . G 6 HOH A 55 655 42 HOH HOH . G 6 HOH A 56 656 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5ZP . . . F 5 34.274 36.632 62.937 1 44.17 ? C2 5ZP 505 A 1 HETATM 2 C C3 5ZP . . . F 5 34.106 37.39 61.735 1 28.47 ? C3 5ZP 505 A 1 HETATM 3 C C4 5ZP . . . F 5 34.736 38.65 61.562 1 38.88 ? C4 5ZP 505 A 1 HETATM 4 C C5 5ZP . . . F 5 35.541 39.141 62.616 1 44.57 ? C5 5ZP 505 A 1 HETATM 5 C C6 5ZP . . . F 5 35.714 38.408 63.802 1 31.44 ? C6 5ZP 505 A 1 HETATM 6 N N1 5ZP . . . F 5 33.271 36.661 60.887 1 35.41 ? N1 5ZP 505 A 1 HETATM 7 C C7 5ZP . . . F 5 35.086 37.163 63.961 1 30.9 ? C7 5ZP 505 A 1 HETATM 8 C C8 5ZP . . . F 5 32.907 35.48 61.505 1 29.62 ? C8 5ZP 505 A 1 HETATM 9 C C9 5ZP . . . F 5 33.51 35.423 62.781 1 32.77 ? C9 5ZP 505 A 1 HETATM 10 C C10 5ZP . . . F 5 33.236 34.274 63.545 1 27.5 ? C10 5ZP 505 A 1 HETATM 11 C C11 5ZP . . . F 5 32.406 33.263 63.025 1 25.74 ? C11 5ZP 505 A 1 HETATM 12 C C12 5ZP . . . F 5 31.86 33.443 61.727 1 36.31 ? C12 5ZP 505 A 1 HETATM 13 C C14 5ZP . . . F 5 34.579 39.475 60.3 1 31.52 ? C14 5ZP 505 A 1 HETATM 14 C C15 5ZP . . . F 5 35.263 40.793 60.01 1 26.43 ? C15 5ZP 505 A 1 HETATM 15 C C16 5ZP . . . F 5 33.765 40.745 60.234 1 39.29 ? C16 5ZP 505 A 1 HETATM 16 C C17 5ZP . . . F 5 32.165 32.103 63.87 1 34.85 ? C17 5ZP 505 A 1 HETATM 17 C C18 5ZP . . . F 5 30.952 32.42 61.071 1 33.29 ? C18 5ZP 505 A 1 HETATM 18 C C20 5ZP . . . F 5 31.986 31.003 65.658 1 39.15 ? C20 5ZP 505 A 1 HETATM 19 C C23 5ZP . . . F 5 31.981 30.733 67.128 1 43.29 ? C23 5ZP 505 A 1 HETATM 20 C C24 5ZP . . . F 5 33.407 30.926 67.695 1 42.77 ? C24 5ZP 505 A 1 HETATM 21 C C25 5ZP . . . F 5 30.823 31.466 67.873 1 48.4 ? C25 5ZP 505 A 1 HETATM 22 C C26 5ZP . . . F 5 34.455 30.155 66.902 1 49.8 ? C26 5ZP 505 A 1 HETATM 23 C C29 5ZP . . . F 5 36.196 30.325 65.127 1 46.36 ? C29 5ZP 505 A 1 HETATM 24 C C30 5ZP . . . F 5 30.981 31.45 69.405 1 51.32 ? C30 5ZP 505 A 1 HETATM 25 C C31 5ZP . . . F 5 29.419 30.977 67.469 1 43.28 ? C31 5ZP 505 A 1 HETATM 26 C C32 5ZP . . . F 5 37.551 31.023 65.337 1 26.81 ? C32 5ZP 505 A 1 HETATM 27 C C33 5ZP . . . F 5 35.7 30.469 63.696 1 39.86 ? C33 5ZP 505 A 1 HETATM 28 C C34 5ZP . . . F 5 35.728 31.723 63.051 1 36.81 ? C34 5ZP 505 A 1 HETATM 29 C C35 5ZP . . . F 5 35.265 31.85 61.727 1 39.08 ? C35 5ZP 505 A 1 HETATM 30 C C36 5ZP . . . F 5 34.769 30.725 61.043 1 49.23 ? C36 5ZP 505 A 1 HETATM 31 C C37 5ZP . . . F 5 34.737 29.471 61.681 1 42.43 ? C37 5ZP 505 A 1 HETATM 32 C C38 5ZP . . . F 5 35.199 29.343 63.004 1 42.44 ? C38 5ZP 505 A 1 HETATM 33 N N13 5ZP . . . F 5 32.096 34.533 60.958 1 32.33 ? N13 5ZP 505 A 1 HETATM 34 N N21 5ZP . . . F 5 31.731 30.137 64.676 1 45.62 ? N21 5ZP 505 A 1 HETATM 35 N N22 5ZP . . . F 5 31.852 30.855 63.508 1 38.54 ? N22 5ZP 505 A 1 HETATM 36 N N28 5ZP . . . F 5 35.178 30.856 66.022 1 38.11 ? N28 5ZP 505 A 1 HETATM 37 O O19 5ZP . . . F 5 32.262 32.255 65.216 1 48.03 ? O19 5ZP 505 A 1 HETATM 38 O O27 5ZP . . . F 5 34.599 28.95 67.082 1 63.73 ? O27 5ZP 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 38 #