data_7VC3
#
_model_server_result.job_id            Zk8rJCCUvmRoRc_g5gvocA 
_model_server_result.datetime_utc      '2024-11-21 22:57:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vc3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":1017}' 
#
_entry.id    7VC3 
#
_exptl.entry_id    7VC3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.38 
_cell.angle_gamma         90 
_cell.entry_id            7VC3 
_cell.length_a            114.733 
_cell.length_b            73.644 
_cell.length_c            74.906 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VC3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             R 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 479 A GLU 809 1_555 R NA NA . A NA 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? 
metalc ? metalc2 A O THR 481 A THR 811 1_555 R NA NA . A NA 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VC3 
_atom_sites.fract_transf_matrix[1][1]    0.008716 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003412 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 1XK A 1 1001 1001 1XK 1XK . 
C 3 PRO A 1 1002 1002 PRO PRO . 
D 4 GOL A 1 1003 1102 GOL GOL . 
E 4 GOL A 1 1004 1103 GOL GOL . 
F 4 GOL A 1 1005 1104 GOL GOL . 
G 5 CL A 1 1006 1201 CL CL . 
H 5 CL A 1 1007 1202 CL CL . 
I 5 CL A 1 1008 1203 CL CL . 
J 5 CL A 1 1009 1204 CL CL . 
K 5 CL A 1 1010 1205 CL CL . 
L 5 CL A 1 1011 1206 CL CL . 
M 5 CL A 1 1012 1207 CL CL . 
N 5 CL A 1 1013 1209 CL CL . 
O 5 CL A 1 1014 1210 CL CL . 
P 5 CL A 1 1015 1211 CL CL . 
Q 5 CL A 1 1016 1212 CL CL . 
R 6 NA A 1 1017 1213 NA NA . 
S 7 SO3 A 1 1018 1214 SO3 SO3 . 
T 8 ETA A 1 1019 1215 ETA ETA . 
U 9 HOH A 1 1101 111 HOH HOH . 
U 9 HOH A 2 1102 46 HOH HOH . 
U 9 HOH A 3 1103 31 HOH HOH . 
U 9 HOH A 4 1104 94 HOH HOH . 
U 9 HOH A 5 1105 128 HOH HOH . 
U 9 HOH A 6 1106 83 HOH HOH . 
U 9 HOH A 7 1107 57 HOH HOH . 
U 9 HOH A 8 1108 30 HOH HOH . 
U 9 HOH A 9 1109 52 HOH HOH . 
U 9 HOH A 10 1110 51 HOH HOH . 
U 9 HOH A 11 1111 23 HOH HOH . 
U 9 HOH A 12 1112 74 HOH HOH . 
U 9 HOH A 13 1113 1 HOH HOH . 
U 9 HOH A 14 1114 112 HOH HOH . 
U 9 HOH A 15 1115 105 HOH HOH . 
U 9 HOH A 16 1116 95 HOH HOH . 
U 9 HOH A 17 1117 8 HOH HOH . 
U 9 HOH A 18 1118 6 HOH HOH . 
U 9 HOH A 19 1119 120 HOH HOH . 
U 9 HOH A 20 1120 7 HOH HOH . 
U 9 HOH A 21 1121 32 HOH HOH . 
U 9 HOH A 22 1122 79 HOH HOH . 
U 9 HOH A 23 1123 65 HOH HOH . 
U 9 HOH A 24 1124 92 HOH HOH . 
U 9 HOH A 25 1125 116 HOH HOH . 
U 9 HOH A 26 1126 45 HOH HOH . 
U 9 HOH A 27 1127 88 HOH HOH . 
U 9 HOH A 28 1128 108 HOH HOH . 
U 9 HOH A 29 1129 28 HOH HOH . 
U 9 HOH A 30 1130 80 HOH HOH . 
U 9 HOH A 31 1131 24 HOH HOH . 
U 9 HOH A 32 1132 35 HOH HOH . 
U 9 HOH A 33 1133 15 HOH HOH . 
U 9 HOH A 34 1134 4 HOH HOH . 
U 9 HOH A 35 1135 84 HOH HOH . 
U 9 HOH A 36 1136 2 HOH HOH . 
U 9 HOH A 37 1137 41 HOH HOH . 
U 9 HOH A 38 1138 129 HOH HOH . 
U 9 HOH A 39 1139 39 HOH HOH . 
U 9 HOH A 40 1140 117 HOH HOH . 
U 9 HOH A 41 1141 38 HOH HOH . 
U 9 HOH A 42 1142 42 HOH HOH . 
U 9 HOH A 43 1143 97 HOH HOH . 
U 9 HOH A 44 1144 25 HOH HOH . 
U 9 HOH A 45 1145 98 HOH HOH . 
U 9 HOH A 46 1146 3 HOH HOH . 
U 9 HOH A 47 1147 18 HOH HOH . 
U 9 HOH A 48 1148 17 HOH HOH . 
U 9 HOH A 49 1149 48 HOH HOH . 
U 9 HOH A 50 1150 93 HOH HOH . 
U 9 HOH A 51 1151 75 HOH HOH . 
U 9 HOH A 52 1152 53 HOH HOH . 
U 9 HOH A 53 1153 34 HOH HOH . 
U 9 HOH A 54 1154 81 HOH HOH . 
U 9 HOH A 55 1155 36 HOH HOH . 
U 9 HOH A 56 1156 90 HOH HOH . 
U 9 HOH A 57 1157 13 HOH HOH . 
U 9 HOH A 58 1158 123 HOH HOH . 
U 9 HOH A 59 1159 21 HOH HOH . 
U 9 HOH A 60 1160 96 HOH HOH . 
U 9 HOH A 61 1161 106 HOH HOH . 
U 9 HOH A 62 1162 9 HOH HOH . 
U 9 HOH A 63 1163 59 HOH HOH . 
U 9 HOH A 64 1164 70 HOH HOH . 
U 9 HOH A 65 1165 99 HOH HOH . 
U 9 HOH A 66 1167 118 HOH HOH . 
U 9 HOH A 67 1168 113 HOH HOH . 
U 9 HOH A 68 1169 127 HOH HOH . 
U 9 HOH A 69 1170 82 HOH HOH . 
U 9 HOH A 70 1171 11 HOH HOH . 
U 9 HOH A 71 1172 22 HOH HOH . 
U 9 HOH A 72 1173 63 HOH HOH . 
U 9 HOH A 73 1174 101 HOH HOH . 
U 9 HOH A 74 1175 19 HOH HOH . 
U 9 HOH A 75 1176 10 HOH HOH . 
U 9 HOH A 76 1177 14 HOH HOH . 
U 9 HOH A 77 1178 49 HOH HOH . 
U 9 HOH A 78 1179 64 HOH HOH . 
U 9 HOH A 79 1180 69 HOH HOH . 
U 9 HOH A 80 1181 86 HOH HOH . 
U 9 HOH A 81 1182 58 HOH HOH . 
U 9 HOH A 82 1183 125 HOH HOH . 
U 9 HOH A 83 1184 27 HOH HOH . 
U 9 HOH A 84 1185 55 HOH HOH . 
U 9 HOH A 85 1186 44 HOH HOH . 
U 9 HOH A 86 1187 40 HOH HOH . 
U 9 HOH A 87 1188 37 HOH HOH . 
U 9 HOH A 88 1189 91 HOH HOH . 
U 9 HOH A 89 1190 43 HOH HOH . 
U 9 HOH A 90 1191 73 HOH HOH . 
U 9 HOH A 91 1192 16 HOH HOH . 
U 9 HOH A 92 1193 62 HOH HOH . 
U 9 HOH A 93 1194 66 HOH HOH . 
U 9 HOH A 94 1195 85 HOH HOH . 
U 9 HOH A 95 1196 12 HOH HOH . 
U 9 HOH A 96 1197 47 HOH HOH . 
U 9 HOH A 97 1198 5 HOH HOH . 
U 9 HOH A 98 1199 103 HOH HOH . 
U 9 HOH A 99 1200 107 HOH HOH . 
U 9 HOH A 100 1201 56 HOH HOH . 
U 9 HOH A 101 1202 26 HOH HOH . 
U 9 HOH A 102 1203 110 HOH HOH . 
U 9 HOH A 103 1204 61 HOH HOH . 
U 9 HOH A 104 1205 67 HOH HOH . 
U 9 HOH A 105 1206 29 HOH HOH . 
U 9 HOH A 106 1207 121 HOH HOH . 
U 9 HOH A 107 1208 104 HOH HOH . 
U 9 HOH A 108 1209 89 HOH HOH . 
U 9 HOH A 109 1210 77 HOH HOH . 
U 9 HOH A 110 1211 33 HOH HOH . 
U 9 HOH A 111 1212 72 HOH HOH . 
U 9 HOH A 112 1213 131 HOH HOH . 
U 9 HOH A 113 1214 102 HOH HOH . 
U 9 HOH A 114 1215 60 HOH HOH . 
U 9 HOH A 115 1216 68 HOH HOH . 
U 9 HOH A 116 1217 126 HOH HOH . 
U 9 HOH A 117 1218 54 HOH HOH . 
U 9 HOH A 118 1219 87 HOH HOH . 
U 9 HOH A 119 1220 130 HOH HOH . 
U 9 HOH A 120 1221 115 HOH HOH . 
U 9 HOH A 121 1222 109 HOH HOH . 
U 9 HOH A 122 1223 76 HOH HOH . 
U 9 HOH A 123 1224 71 HOH HOH . 
U 9 HOH A 124 1225 119 HOH HOH . 
U 9 HOH A 125 1226 122 HOH HOH . 
U 9 HOH A 126 1227 50 HOH HOH . 
U 9 HOH A 127 1228 78 HOH HOH . 
U 9 HOH A 128 1229 124 HOH HOH . 
U 9 HOH A 129 1230 114 HOH HOH . 
U 9 HOH A 130 1231 100 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         R 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               48.753 
_atom_site.Cartn_y               -3.858 
_atom_site.Cartn_z               -0.685 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        81.95 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1017 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#