data_7VC5 # _model_server_result.job_id t2UvlN7pjbOBoZ7vI3EMDw _model_server_result.datetime_utc '2024-11-05 07:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":909}' # _entry.id 7VC5 # _exptl.entry_id 7VC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.57 _cell.angle_gamma 90 _cell.entry_id 7VC5 _cell.length_a 115.194 _cell.length_b 73.092 _cell.length_c 74.936 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 193 n n C1 C2 EDO sing 194 n n C1 H11 EDO sing 195 n n C1 H12 EDO sing 196 n n O1 HO1 EDO sing 197 n n C2 O2 EDO sing 198 n n C2 H21 EDO sing 199 n n C2 H22 EDO sing 200 n n O2 HO2 EDO sing 201 n n # _atom_sites.entry_id 7VC5 _atom_sites.fract_transf_matrix[1][1] 0.008681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003432 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1TI A 1 901 901 1TI 1TI . C 3 9SF A 1 902 902 9SF 9SF . D 4 MES A 1 903 1001 MES MES . E 5 EDO A 1 904 1002 EDO EDO . F 5 EDO A 1 905 1003 EDO EDO . G 5 EDO A 1 906 1005 EDO EDO . H 5 EDO A 1 907 1006 EDO EDO . I 5 EDO A 1 908 1007 EDO EDO . J 5 EDO A 1 909 1008 EDO EDO . K 5 EDO A 1 910 1009 EDO EDO . L 6 CL A 1 911 1010 CL CL . M 6 CL A 1 912 1011 CL CL . N 7 HOH A 1 1001 244 HOH HOH . N 7 HOH A 2 1002 209 HOH HOH . N 7 HOH A 3 1003 121 HOH HOH . N 7 HOH A 4 1004 104 HOH HOH . N 7 HOH A 5 1005 85 HOH HOH . N 7 HOH A 6 1006 305 HOH HOH . N 7 HOH A 7 1007 166 HOH HOH . N 7 HOH A 8 1008 161 HOH HOH . N 7 HOH A 9 1009 184 HOH HOH . N 7 HOH A 10 1010 94 HOH HOH . N 7 HOH A 11 1011 120 HOH HOH . N 7 HOH A 12 1012 128 HOH HOH . N 7 HOH A 13 1013 93 HOH HOH . N 7 HOH A 14 1014 67 HOH HOH . N 7 HOH A 15 1015 264 HOH HOH . N 7 HOH A 16 1016 42 HOH HOH . N 7 HOH A 17 1017 122 HOH HOH . N 7 HOH A 18 1018 119 HOH HOH . N 7 HOH A 19 1019 68 HOH HOH . N 7 HOH A 20 1020 87 HOH HOH . N 7 HOH A 21 1021 63 HOH HOH . N 7 HOH A 22 1022 22 HOH HOH . N 7 HOH A 23 1023 203 HOH HOH . N 7 HOH A 24 1024 40 HOH HOH . N 7 HOH A 25 1025 167 HOH HOH . N 7 HOH A 26 1026 198 HOH HOH . N 7 HOH A 27 1027 245 HOH HOH . N 7 HOH A 28 1028 217 HOH HOH . N 7 HOH A 29 1029 218 HOH HOH . N 7 HOH A 30 1030 9 HOH HOH . N 7 HOH A 31 1031 91 HOH HOH . N 7 HOH A 32 1032 31 HOH HOH . N 7 HOH A 33 1033 207 HOH HOH . N 7 HOH A 34 1034 124 HOH HOH . N 7 HOH A 35 1035 116 HOH HOH . N 7 HOH A 36 1036 37 HOH HOH . N 7 HOH A 37 1037 212 HOH HOH . N 7 HOH A 38 1038 295 HOH HOH . N 7 HOH A 39 1039 27 HOH HOH . N 7 HOH A 40 1040 111 HOH HOH . N 7 HOH A 41 1041 30 HOH HOH . N 7 HOH A 42 1042 101 HOH HOH . N 7 HOH A 43 1043 154 HOH HOH . N 7 HOH A 44 1044 49 HOH HOH . N 7 HOH A 45 1045 176 HOH HOH . N 7 HOH A 46 1046 35 HOH HOH . N 7 HOH A 47 1047 179 HOH HOH . N 7 HOH A 48 1048 78 HOH HOH . N 7 HOH A 49 1049 133 HOH HOH . N 7 HOH A 50 1050 123 HOH HOH . N 7 HOH A 51 1051 175 HOH HOH . N 7 HOH A 52 1052 72 HOH HOH . N 7 HOH A 53 1053 75 HOH HOH . N 7 HOH A 54 1054 215 HOH HOH . N 7 HOH A 55 1055 74 HOH HOH . N 7 HOH A 56 1056 11 HOH HOH . N 7 HOH A 57 1057 14 HOH HOH . N 7 HOH A 58 1058 298 HOH HOH . N 7 HOH A 59 1059 17 HOH HOH . N 7 HOH A 60 1060 86 HOH HOH . N 7 HOH A 61 1061 112 HOH HOH . N 7 HOH A 62 1062 256 HOH HOH . N 7 HOH A 63 1063 73 HOH HOH . N 7 HOH A 64 1064 113 HOH HOH . N 7 HOH A 65 1065 66 HOH HOH . N 7 HOH A 66 1066 156 HOH HOH . N 7 HOH A 67 1067 151 HOH HOH . N 7 HOH A 68 1068 186 HOH HOH . N 7 HOH A 69 1069 23 HOH HOH . N 7 HOH A 70 1070 162 HOH HOH . N 7 HOH A 71 1071 100 HOH HOH . N 7 HOH A 72 1072 6 HOH HOH . N 7 HOH A 73 1073 95 HOH HOH . N 7 HOH A 74 1074 169 HOH HOH . N 7 HOH A 75 1075 57 HOH HOH . N 7 HOH A 76 1076 183 HOH HOH . N 7 HOH A 77 1077 98 HOH HOH . N 7 HOH A 78 1078 296 HOH HOH . N 7 HOH A 79 1079 221 HOH HOH . N 7 HOH A 80 1080 171 HOH HOH . N 7 HOH A 81 1081 289 HOH HOH . N 7 HOH A 82 1082 80 HOH HOH . N 7 HOH A 83 1083 190 HOH HOH . N 7 HOH A 84 1084 243 HOH HOH . N 7 HOH A 85 1085 150 HOH HOH . N 7 HOH A 86 1086 148 HOH HOH . N 7 HOH A 87 1087 5 HOH HOH . N 7 HOH A 88 1088 90 HOH HOH . N 7 HOH A 89 1089 163 HOH HOH . N 7 HOH A 90 1090 208 HOH HOH . N 7 HOH A 91 1091 2 HOH HOH . N 7 HOH A 92 1092 92 HOH HOH . N 7 HOH A 93 1093 239 HOH HOH . N 7 HOH A 94 1094 60 HOH HOH . N 7 HOH A 95 1095 64 HOH HOH . N 7 HOH A 96 1096 149 HOH HOH . N 7 HOH A 97 1097 15 HOH HOH . N 7 HOH A 98 1098 110 HOH HOH . N 7 HOH A 99 1099 7 HOH HOH . N 7 HOH A 100 1100 82 HOH HOH . N 7 HOH A 101 1101 34 HOH HOH . N 7 HOH A 102 1102 173 HOH HOH . N 7 HOH A 103 1103 304 HOH HOH . N 7 HOH A 104 1104 48 HOH HOH . N 7 HOH A 105 1105 16 HOH HOH . N 7 HOH A 106 1106 134 HOH HOH . N 7 HOH A 107 1107 279 HOH HOH . N 7 HOH A 108 1108 69 HOH HOH . N 7 HOH A 109 1109 4 HOH HOH . N 7 HOH A 110 1110 294 HOH HOH . N 7 HOH A 111 1111 8 HOH HOH . N 7 HOH A 112 1112 118 HOH HOH . N 7 HOH A 113 1113 168 HOH HOH . N 7 HOH A 114 1114 146 HOH HOH . N 7 HOH A 115 1115 97 HOH HOH . N 7 HOH A 116 1116 52 HOH HOH . N 7 HOH A 117 1117 222 HOH HOH . N 7 HOH A 118 1118 178 HOH HOH . N 7 HOH A 119 1119 194 HOH HOH . N 7 HOH A 120 1120 125 HOH HOH . N 7 HOH A 121 1121 180 HOH HOH . N 7 HOH A 122 1122 106 HOH HOH . N 7 HOH A 123 1123 28 HOH HOH . N 7 HOH A 124 1124 46 HOH HOH . N 7 HOH A 125 1125 164 HOH HOH . N 7 HOH A 126 1126 268 HOH HOH . N 7 HOH A 127 1127 76 HOH HOH . N 7 HOH A 128 1128 293 HOH HOH . N 7 HOH A 129 1129 21 HOH HOH . N 7 HOH A 130 1130 214 HOH HOH . N 7 HOH A 131 1131 47 HOH HOH . N 7 HOH A 132 1132 102 HOH HOH . N 7 HOH A 133 1133 1 HOH HOH . N 7 HOH A 134 1134 107 HOH HOH . N 7 HOH A 135 1135 235 HOH HOH . N 7 HOH A 136 1136 43 HOH HOH . N 7 HOH A 137 1137 12 HOH HOH . N 7 HOH A 138 1138 29 HOH HOH . N 7 HOH A 139 1139 59 HOH HOH . N 7 HOH A 140 1140 181 HOH HOH . N 7 HOH A 141 1141 136 HOH HOH . N 7 HOH A 142 1142 26 HOH HOH . N 7 HOH A 143 1143 18 HOH HOH . N 7 HOH A 144 1144 195 HOH HOH . N 7 HOH A 145 1145 117 HOH HOH . N 7 HOH A 146 1146 191 HOH HOH . N 7 HOH A 147 1147 213 HOH HOH . N 7 HOH A 148 1148 127 HOH HOH . N 7 HOH A 149 1149 109 HOH HOH . N 7 HOH A 150 1150 230 HOH HOH . N 7 HOH A 151 1151 160 HOH HOH . N 7 HOH A 152 1152 41 HOH HOH . N 7 HOH A 153 1153 226 HOH HOH . N 7 HOH A 154 1154 81 HOH HOH . N 7 HOH A 155 1155 143 HOH HOH . N 7 HOH A 156 1156 130 HOH HOH . N 7 HOH A 157 1157 71 HOH HOH . N 7 HOH A 158 1158 84 HOH HOH . N 7 HOH A 159 1159 159 HOH HOH . N 7 HOH A 160 1160 96 HOH HOH . N 7 HOH A 161 1161 115 HOH HOH . N 7 HOH A 162 1162 137 HOH HOH . N 7 HOH A 163 1163 99 HOH HOH . N 7 HOH A 164 1164 50 HOH HOH . N 7 HOH A 165 1165 10 HOH HOH . N 7 HOH A 166 1166 36 HOH HOH . N 7 HOH A 167 1167 139 HOH HOH . N 7 HOH A 168 1168 277 HOH HOH . N 7 HOH A 169 1169 39 HOH HOH . N 7 HOH A 170 1170 301 HOH HOH . N 7 HOH A 171 1171 3 HOH HOH . N 7 HOH A 172 1172 61 HOH HOH . N 7 HOH A 173 1173 54 HOH HOH . N 7 HOH A 174 1174 114 HOH HOH . N 7 HOH A 175 1175 105 HOH HOH . N 7 HOH A 176 1176 25 HOH HOH . N 7 HOH A 177 1177 246 HOH HOH . N 7 HOH A 178 1178 267 HOH HOH . N 7 HOH A 179 1179 55 HOH HOH . N 7 HOH A 180 1180 287 HOH HOH . N 7 HOH A 181 1181 53 HOH HOH . N 7 HOH A 182 1182 44 HOH HOH . N 7 HOH A 183 1183 272 HOH HOH . N 7 HOH A 184 1184 155 HOH HOH . N 7 HOH A 185 1185 135 HOH HOH . N 7 HOH A 186 1186 33 HOH HOH . N 7 HOH A 187 1187 45 HOH HOH . N 7 HOH A 188 1188 58 HOH HOH . N 7 HOH A 189 1189 20 HOH HOH . N 7 HOH A 190 1190 274 HOH HOH . N 7 HOH A 191 1191 199 HOH HOH . N 7 HOH A 192 1192 13 HOH HOH . N 7 HOH A 193 1193 126 HOH HOH . N 7 HOH A 194 1194 65 HOH HOH . N 7 HOH A 195 1195 211 HOH HOH . N 7 HOH A 196 1196 141 HOH HOH . N 7 HOH A 197 1197 281 HOH HOH . N 7 HOH A 198 1198 88 HOH HOH . N 7 HOH A 199 1199 236 HOH HOH . N 7 HOH A 200 1200 19 HOH HOH . N 7 HOH A 201 1201 138 HOH HOH . N 7 HOH A 202 1202 241 HOH HOH . N 7 HOH A 203 1203 219 HOH HOH . N 7 HOH A 204 1204 89 HOH HOH . N 7 HOH A 205 1205 77 HOH HOH . N 7 HOH A 206 1206 188 HOH HOH . N 7 HOH A 207 1207 177 HOH HOH . N 7 HOH A 208 1208 24 HOH HOH . N 7 HOH A 209 1209 152 HOH HOH . N 7 HOH A 210 1210 250 HOH HOH . N 7 HOH A 211 1212 38 HOH HOH . N 7 HOH A 212 1213 270 HOH HOH . N 7 HOH A 213 1214 70 HOH HOH . N 7 HOH A 214 1215 238 HOH HOH . N 7 HOH A 215 1216 187 HOH HOH . N 7 HOH A 216 1217 56 HOH HOH . N 7 HOH A 217 1218 253 HOH HOH . N 7 HOH A 218 1219 51 HOH HOH . N 7 HOH A 219 1220 140 HOH HOH . N 7 HOH A 220 1221 79 HOH HOH . N 7 HOH A 221 1222 32 HOH HOH . N 7 HOH A 222 1223 265 HOH HOH . N 7 HOH A 223 1224 202 HOH HOH . N 7 HOH A 224 1225 62 HOH HOH . N 7 HOH A 225 1226 255 HOH HOH . N 7 HOH A 226 1227 165 HOH HOH . N 7 HOH A 227 1228 285 HOH HOH . N 7 HOH A 228 1229 278 HOH HOH . N 7 HOH A 229 1230 292 HOH HOH . N 7 HOH A 230 1231 144 HOH HOH . N 7 HOH A 231 1232 129 HOH HOH . N 7 HOH A 232 1233 131 HOH HOH . N 7 HOH A 233 1234 288 HOH HOH . N 7 HOH A 234 1235 192 HOH HOH . N 7 HOH A 235 1236 108 HOH HOH . N 7 HOH A 236 1237 206 HOH HOH . N 7 HOH A 237 1238 174 HOH HOH . N 7 HOH A 238 1239 291 HOH HOH . N 7 HOH A 239 1240 257 HOH HOH . N 7 HOH A 240 1241 157 HOH HOH . N 7 HOH A 241 1242 297 HOH HOH . N 7 HOH A 242 1243 252 HOH HOH . N 7 HOH A 243 1244 280 HOH HOH . N 7 HOH A 244 1245 145 HOH HOH . N 7 HOH A 245 1246 193 HOH HOH . N 7 HOH A 246 1247 182 HOH HOH . N 7 HOH A 247 1248 204 HOH HOH . N 7 HOH A 248 1249 290 HOH HOH . N 7 HOH A 249 1250 286 HOH HOH . N 7 HOH A 250 1251 232 HOH HOH . N 7 HOH A 251 1252 263 HOH HOH . N 7 HOH A 252 1253 249 HOH HOH . N 7 HOH A 253 1254 254 HOH HOH . N 7 HOH A 254 1255 248 HOH HOH . N 7 HOH A 255 1256 260 HOH HOH . N 7 HOH A 256 1257 142 HOH HOH . N 7 HOH A 257 1258 282 HOH HOH . N 7 HOH A 258 1259 223 HOH HOH . N 7 HOH A 259 1260 247 HOH HOH . N 7 HOH A 260 1261 271 HOH HOH . N 7 HOH A 261 1262 299 HOH HOH . N 7 HOH A 262 1263 284 HOH HOH . N 7 HOH A 263 1264 251 HOH HOH . N 7 HOH A 264 1265 196 HOH HOH . N 7 HOH A 265 1266 306 HOH HOH . N 7 HOH A 266 1267 273 HOH HOH . N 7 HOH A 267 1268 83 HOH HOH . N 7 HOH A 268 1269 220 HOH HOH . N 7 HOH A 269 1270 262 HOH HOH . N 7 HOH A 270 1271 234 HOH HOH . N 7 HOH A 271 1272 205 HOH HOH . N 7 HOH A 272 1273 224 HOH HOH . N 7 HOH A 273 1274 158 HOH HOH . N 7 HOH A 274 1275 300 HOH HOH . N 7 HOH A 275 1276 276 HOH HOH . N 7 HOH A 276 1277 258 HOH HOH . N 7 HOH A 277 1278 201 HOH HOH . N 7 HOH A 278 1279 259 HOH HOH . N 7 HOH A 279 1280 170 HOH HOH . N 7 HOH A 280 1281 231 HOH HOH . N 7 HOH A 281 1282 132 HOH HOH . N 7 HOH A 282 1283 225 HOH HOH . N 7 HOH A 283 1284 172 HOH HOH . N 7 HOH A 284 1285 275 HOH HOH . N 7 HOH A 285 1286 228 HOH HOH . N 7 HOH A 286 1287 302 HOH HOH . N 7 HOH A 287 1288 237 HOH HOH . N 7 HOH A 288 1289 147 HOH HOH . N 7 HOH A 289 1290 242 HOH HOH . N 7 HOH A 290 1291 269 HOH HOH . N 7 HOH A 291 1292 153 HOH HOH . N 7 HOH A 292 1293 266 HOH HOH . N 7 HOH A 293 1294 103 HOH HOH . N 7 HOH A 294 1295 307 HOH HOH . N 7 HOH A 295 1296 303 HOH HOH . N 7 HOH A 296 1297 216 HOH HOH . N 7 HOH A 297 1298 283 HOH HOH . N 7 HOH A 298 1299 185 HOH HOH . N 7 HOH A 299 1300 227 HOH HOH . N 7 HOH A 300 1301 233 HOH HOH . N 7 HOH A 301 1302 189 HOH HOH . N 7 HOH A 302 1303 210 HOH HOH . N 7 HOH A 303 1304 200 HOH HOH . N 7 HOH A 304 1305 261 HOH HOH . N 7 HOH A 305 1306 240 HOH HOH . N 7 HOH A 306 1307 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 5 26.844 -15.677 20.31 1 77.24 ? C1 EDO 909 A 1 HETATM 2 O O1 EDO . . . J 5 27.732 -14.735 20.92 1 81.52 ? O1 EDO 909 A 1 HETATM 3 C C2 EDO . . . J 5 27.514 -17.045 20.253 1 80.48 ? C2 EDO 909 A 1 HETATM 4 O O2 EDO . . . J 5 26.587 -18.013 19.75 1 80.22 ? O2 EDO 909 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #