data_7VCN
#
_model_server_result.job_id            J1jHBjXqvoEh1L4LoCiVCg 
_model_server_result.datetime_utc      '2025-01-02 18:16:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vcn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":901}' 
#
_entry.id    7VCN 
#
_exptl.entry_id    7VCN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              556.353 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Tb-Xo4 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         79.883 
_cell.angle_beta          86.895 
_cell.angle_gamma         87.186 
_cell.entry_id            7VCN 
_cell.length_a            61.815 
_cell.length_b            70.288 
_cell.length_c            82.71 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VCN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,J,K 1 1 
C,D,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 17 C ASP 56 1_555 E TB 7MT . C 7MT 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc2 A OD2 ASP 17 C ASP 56 1_555 E TB 7MT . C 7MT 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc3 B OE1 GLU 450 A GLU 807 1_555 G TB TB . A TB 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc4 B OE2 GLU 450 A GLU 807 1_555 G TB TB . A TB 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
metalc ? metalc5 C OD1 ASP 17 D ASP 56 1_555 H TB 7MT . D 7MT 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc6 C OD2 ASP 17 D ASP 56 1_555 H TB 7MT . D 7MT 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc7 D NZ LYS 94 B LYS 451 1_555 I TB TB . B TB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
#
_chem_comp.formula           'C20 H23 N5 O4 Tb 5' 
_chem_comp.formula_weight    556.353 
_chem_comp.id                7MT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Tb-Xo4 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 7MT doub 1 n y 
C21 C22 7MT sing 2 n y 
C10 C13 7MT doub 3 n y 
C10 C30 7MT sing 4 n n 
C10 N17 7MT sing 5 n y 
C11 C19 7MT doub 6 n y 
C11 C29 7MT sing 7 n n 
C11 N23 7MT sing 8 n y 
C01 C03 7MT sing 9 n n 
C01 N02 7MT sing 10 n n 
C03 N09 7MT sing 11 n n 
C04 C05 7MT sing 12 n n 
C04 N02 7MT sing 13 n n 
C05 N06 7MT sing 14 n n 
C07 C08 7MT sing 15 n n 
C07 N06 7MT sing 16 n n 
C08 N09 7MT sing 17 n n 
C13 C14 7MT sing 18 n y 
C14 C15 7MT doub 19 n y 
C15 C16 7MT sing 20 n y 
C16 C18 7MT sing 21 n n 
C16 N17 7MT doub 22 n y 
C18 O27 7MT sing 23 n n 
C18 O28 7MT doub 24 n n 
C19 C20 7MT sing 25 n y 
C22 C24 7MT sing 26 n n 
C22 N23 7MT doub 27 n y 
C24 O25 7MT doub 28 n n 
C24 O26 7MT sing 29 n n 
C29 N09 7MT sing 30 n n 
C30 N02 7MT sing 31 n n 
N23 TB 7MT sing 32 n n 
C21 H211 7MT sing 33 n n 
C01 H012 7MT sing 34 n n 
C01 H011 7MT sing 35 n n 
C03 H031 7MT sing 36 n n 
C03 H032 7MT sing 37 n n 
C04 H042 7MT sing 38 n n 
C04 H041 7MT sing 39 n n 
C05 H051 7MT sing 40 n n 
C05 H052 7MT sing 41 n n 
C07 H072 7MT sing 42 n n 
C07 H071 7MT sing 43 n n 
C08 H081 7MT sing 44 n n 
C08 H082 7MT sing 45 n n 
C13 H131 7MT sing 46 n n 
C14 H141 7MT sing 47 n n 
C15 H151 7MT sing 48 n n 
C19 H191 7MT sing 49 n n 
C20 H201 7MT sing 50 n n 
C29 H292 7MT sing 51 n n 
C29 H291 7MT sing 52 n n 
C30 H302 7MT sing 53 n n 
C30 H301 7MT sing 54 n n 
N02 TB 7MT sing 55 n n 
N06 TB 7MT sing 56 n n 
N06 H061 7MT sing 57 n n 
N09 TB 7MT sing 58 n n 
O26 TB 7MT sing 59 n n 
N17 TB 7MT sing 60 n n 
O27 TB 7MT sing 61 n n 
#
_atom_sites.entry_id                     7VCN 
_atom_sites.fract_transf_matrix[1][1]    0.016177 
_atom_sites.fract_transf_matrix[1][2]    -0.000795 
_atom_sites.fract_transf_matrix[1][3]    -0.000751 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014244 
_atom_sites.fract_transf_matrix[2][3]    -0.002509 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 7MT C 1 901 901 7MT 7MT . 
F 4 TB A 1 901 1 TB TB . 
G 4 TB A 1 902 3 TB TB . 
H 3 7MT D 1 901 901 7MT 7MT . 
I 4 TB B 1 901 2 TB TB . 
J 5 HOH C 1 1001 59 HOH HOH . 
J 5 HOH C 2 1002 61 HOH HOH . 
J 5 HOH C 3 1003 31 HOH HOH . 
J 5 HOH C 4 1004 32 HOH HOH . 
J 5 HOH C 5 1005 56 HOH HOH . 
J 5 HOH C 6 1006 129 HOH HOH . 
J 5 HOH C 7 1007 51 HOH HOH . 
J 5 HOH C 8 1008 1 HOH HOH . 
J 5 HOH C 9 1009 26 HOH HOH . 
J 5 HOH C 10 1010 127 HOH HOH . 
J 5 HOH C 11 1011 87 HOH HOH . 
J 5 HOH C 12 1012 128 HOH HOH . 
J 5 HOH C 13 1013 132 HOH HOH . 
K 5 HOH A 1 1001 82 HOH HOH . 
K 5 HOH A 2 1002 21 HOH HOH . 
K 5 HOH A 3 1003 53 HOH HOH . 
K 5 HOH A 4 1004 76 HOH HOH . 
K 5 HOH A 5 1005 72 HOH HOH . 
K 5 HOH A 6 1006 81 HOH HOH . 
K 5 HOH A 7 1007 105 HOH HOH . 
K 5 HOH A 8 1008 27 HOH HOH . 
K 5 HOH A 9 1009 98 HOH HOH . 
K 5 HOH A 10 1010 39 HOH HOH . 
K 5 HOH A 11 1011 35 HOH HOH . 
K 5 HOH A 12 1012 40 HOH HOH . 
K 5 HOH A 13 1013 44 HOH HOH . 
K 5 HOH A 14 1014 88 HOH HOH . 
K 5 HOH A 15 1015 101 HOH HOH . 
K 5 HOH A 16 1016 118 HOH HOH . 
K 5 HOH A 17 1017 86 HOH HOH . 
K 5 HOH A 18 1018 68 HOH HOH . 
K 5 HOH A 19 1019 45 HOH HOH . 
K 5 HOH A 20 1020 93 HOH HOH . 
K 5 HOH A 21 1021 66 HOH HOH . 
K 5 HOH A 22 1022 114 HOH HOH . 
K 5 HOH A 23 1023 47 HOH HOH . 
K 5 HOH A 24 1024 100 HOH HOH . 
K 5 HOH A 25 1025 62 HOH HOH . 
K 5 HOH A 26 1026 108 HOH HOH . 
K 5 HOH A 27 1027 95 HOH HOH . 
K 5 HOH A 28 1028 78 HOH HOH . 
K 5 HOH A 29 1029 55 HOH HOH . 
K 5 HOH A 30 1030 49 HOH HOH . 
K 5 HOH A 31 1031 29 HOH HOH . 
K 5 HOH A 32 1032 43 HOH HOH . 
K 5 HOH A 33 1033 70 HOH HOH . 
K 5 HOH A 34 1034 103 HOH HOH . 
K 5 HOH A 35 1035 48 HOH HOH . 
K 5 HOH A 36 1036 71 HOH HOH . 
K 5 HOH A 37 1037 38 HOH HOH . 
K 5 HOH A 38 1038 60 HOH HOH . 
K 5 HOH A 39 1039 54 HOH HOH . 
K 5 HOH A 40 1040 131 HOH HOH . 
K 5 HOH A 41 1041 24 HOH HOH . 
K 5 HOH A 42 1042 25 HOH HOH . 
K 5 HOH A 43 1043 113 HOH HOH . 
K 5 HOH A 44 1044 33 HOH HOH . 
K 5 HOH A 45 1045 107 HOH HOH . 
K 5 HOH A 46 1046 102 HOH HOH . 
K 5 HOH A 47 1047 77 HOH HOH . 
K 5 HOH A 48 1048 46 HOH HOH . 
K 5 HOH A 49 1049 99 HOH HOH . 
K 5 HOH A 50 1050 73 HOH HOH . 
K 5 HOH A 51 1051 37 HOH HOH . 
K 5 HOH A 52 1052 23 HOH HOH . 
K 5 HOH A 53 1053 79 HOH HOH . 
K 5 HOH A 54 1054 130 HOH HOH . 
K 5 HOH A 55 1055 74 HOH HOH . 
K 5 HOH A 56 1056 115 HOH HOH . 
K 5 HOH A 57 1057 97 HOH HOH . 
K 5 HOH A 58 1058 106 HOH HOH . 
K 5 HOH A 59 1059 69 HOH HOH . 
K 5 HOH A 60 1060 50 HOH HOH . 
K 5 HOH A 61 1061 52 HOH HOH . 
K 5 HOH A 62 1062 80 HOH HOH . 
K 5 HOH A 63 1063 17 HOH HOH . 
K 5 HOH A 64 1064 63 HOH HOH . 
K 5 HOH A 65 1065 58 HOH HOH . 
K 5 HOH A 66 1066 22 HOH HOH . 
K 5 HOH A 67 1067 94 HOH HOH . 
K 5 HOH A 68 1068 96 HOH HOH . 
K 5 HOH A 69 1069 16 HOH HOH . 
K 5 HOH A 70 1070 19 HOH HOH . 
K 5 HOH A 71 1071 41 HOH HOH . 
K 5 HOH A 72 1072 133 HOH HOH . 
K 5 HOH A 73 1073 109 HOH HOH . 
K 5 HOH A 74 1074 120 HOH HOH . 
L 5 HOH D 1 1001 4 HOH HOH . 
L 5 HOH D 2 1002 75 HOH HOH . 
L 5 HOH D 3 1003 64 HOH HOH . 
L 5 HOH D 4 1004 84 HOH HOH . 
L 5 HOH D 5 1005 20 HOH HOH . 
L 5 HOH D 6 1006 7 HOH HOH . 
L 5 HOH D 7 1007 30 HOH HOH . 
L 5 HOH D 8 1008 42 HOH HOH . 
M 5 HOH B 1 1001 124 HOH HOH . 
M 5 HOH B 2 1002 104 HOH HOH . 
M 5 HOH B 3 1003 34 HOH HOH . 
M 5 HOH B 4 1004 126 HOH HOH . 
M 5 HOH B 5 1005 14 HOH HOH . 
M 5 HOH B 6 1006 65 HOH HOH . 
M 5 HOH B 7 1007 112 HOH HOH . 
M 5 HOH B 8 1008 125 HOH HOH . 
M 5 HOH B 9 1009 117 HOH HOH . 
M 5 HOH B 10 1010 28 HOH HOH . 
M 5 HOH B 11 1011 92 HOH HOH . 
M 5 HOH B 12 1012 119 HOH HOH . 
M 5 HOH B 13 1013 83 HOH HOH . 
M 5 HOH B 14 1014 67 HOH HOH . 
M 5 HOH B 15 1015 91 HOH HOH . 
M 5 HOH B 16 1016 116 HOH HOH . 
M 5 HOH B 17 1017 57 HOH HOH . 
M 5 HOH B 18 1018 85 HOH HOH . 
M 5 HOH B 19 1019 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 7MT . . . H 3 -31.1 -9.072 -40.407 1 61.64 0 C21 7MT 901 D 1 
HETATM 2 C C10 7MT . . . H 3 -33.057 -12.927 -46.994 1 72.85 0 C10 7MT 901 D 1 
HETATM 3 C C11 7MT . . . H 3 -32.499 -8.827 -42.84 1 70.86 0 C11 7MT 901 D 1 
HETATM 4 C C01 7MT . . . H 3 -35.425 -11.578 -45.418 1 69.92 0 C01 7MT 901 D 1 
HETATM 5 C C03 7MT . . . H 3 -34.737 -10.228 -45.324 1 71.53 0 C03 7MT 901 D 1 
HETATM 6 C C04 7MT . . . H 3 -35.359 -13.598 -44.234 1 69.65 0 C04 7MT 901 D 1 
HETATM 7 C C05 7MT . . . H 3 -35.59 -12.998 -42.864 1 68.95 0 C05 7MT 901 D 1 
HETATM 8 C C07 7MT . . . H 3 -34.84 -11.015 -41.817 1 60.46 0 C07 7MT 901 D 1 
HETATM 9 C C08 7MT . . . H 3 -35.028 -10.047 -42.976 1 62.82 0 C08 7MT 901 D 1 
HETATM 10 C C13 7MT . . . H 3 -32.816 -13.328 -48.292 1 74.53 0 C13 7MT 901 D 1 
HETATM 11 C C14 7MT . . . H 3 -31.705 -12.812 -48.942 1 75.21 0 C14 7MT 901 D 1 
HETATM 12 C C15 7MT . . . H 3 -30.874 -11.907 -48.293 1 78.65 0 C15 7MT 901 D 1 
HETATM 13 C C16 7MT . . . H 3 -31.189 -11.536 -46.995 1 76.92 0 C16 7MT 901 D 1 
HETATM 14 C C18 7MT . . . H 3 -30.351 -10.573 -46.235 1 77.76 0 C18 7MT 901 D 1 
HETATM 15 C C19 7MT . . . H 3 -32.297 -7.693 -42.074 1 62.91 0 C19 7MT 901 D 1 
HETATM 16 C C20 7MT . . . H 3 -31.587 -7.841 -40.882 1 57.24 0 C20 7MT 901 D 1 
HETATM 17 C C22 7MT . . . H 3 -31.332 -10.209 -41.161 1 66.87 0 C22 7MT 901 D 1 
HETATM 18 C C24 7MT . . . H 3 -30.83 -11.543 -40.727 1 77.16 0 C24 7MT 901 D 1 
HETATM 19 C C29 7MT . . . H 3 -33.245 -8.88 -44.136 1 69.71 0 C29 7MT 901 D 1 
HETATM 20 C C30 7MT . . . H 3 -34.243 -13.465 -46.254 1 74.79 0 C30 7MT 901 D 1 
HETATM 21 N N02 7MT . . . H 3 -34.536 -12.693 -45.036 1 80.54 0 N02 7MT 901 D 1 
HETATM 22 N N06 7MT . . . H 3 -34.388 -12.324 -42.315 1 77.78 0 N06 7MT 901 D 1 
HETATM 23 N N09 7MT . . . H 3 -34.019 -10.144 -44.065 1 74.37 0 N09 7MT 901 D 1 
HETATM 24 N N17 7MT . . . H 3 -32.255 -12.047 -46.376 1 78.24 0 N17 7MT 901 D 1 
HETATM 25 N N23 7MT . . . H 3 -31.986 -10.147 -42.381 1 74.57 0 N23 7MT 901 D 1 
HETATM 26 O O25 7MT . . . H 3 -30.02 -11.648 -39.788 1 76.51 0 O25 7MT 901 D 1 
HETATM 27 O O26 7MT . . . H 3 -31.077 -12.448 -41.548 1 90.43 0 O26 7MT 901 D 1 
HETATM 28 O O27 7MT . . . H 3 -30.463 -10.654 -45.006 1 76.72 0 O27 7MT 901 D 1 
HETATM 29 O O28 7MT . . . H 3 -29.492 -9.907 -46.817 1 77.84 0 O28 7MT 901 D 1 
HETATM 30 TB TB 7MT . . . H 3 -32.468 -12.023 -43.83 1 72.89 0 TB 7MT 901 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#