data_7VDH # _model_server_result.job_id pAKvqAqzNb9mFQx97SiHpg _model_server_result.datetime_utc '2024-11-21 23:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7VDH # _exptl.entry_id 7VDH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VDH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 R CYS 26 1_555 A SG CYS 258 R CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 168 R CYS 168 1_555 A SG CYS 180 R CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 C SG CYS 139 B CYS 121 1_555 C SG CYS 167 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf4 E SG CYS 197 S CYS 147 1_555 E SG CYS 267 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 155 n n C1 C10 CLR sing 156 n n C1 H11 CLR sing 157 n n C1 H12 CLR sing 158 n n C2 C3 CLR sing 159 n n C2 H21 CLR sing 160 n n C2 H22 CLR sing 161 n n C3 C4 CLR sing 162 n n C3 O1 CLR sing 163 n n C3 H3 CLR sing 164 n n C4 C5 CLR sing 165 n n C4 H41 CLR sing 166 n n C4 H42 CLR sing 167 n n C5 C6 CLR doub 168 n n C5 C10 CLR sing 169 n n C6 C7 CLR sing 170 n n C6 H6 CLR sing 171 n n C7 C8 CLR sing 172 n n C7 H71 CLR sing 173 n n C7 H72 CLR sing 174 n n C8 C9 CLR sing 175 n n C8 C14 CLR sing 176 n n C8 H8 CLR sing 177 n n C9 C10 CLR sing 178 n n C9 C11 CLR sing 179 n n C9 H9 CLR sing 180 n n C10 C19 CLR sing 181 n n C11 C12 CLR sing 182 n n C11 H111 CLR sing 183 n n C11 H112 CLR sing 184 n n C12 C13 CLR sing 185 n n C12 H121 CLR sing 186 n n C12 H122 CLR sing 187 n n C13 C14 CLR sing 188 n n C13 C17 CLR sing 189 n n C13 C18 CLR sing 190 n n C14 C15 CLR sing 191 n n C14 H14 CLR sing 192 n n C15 C16 CLR sing 193 n n C15 H151 CLR sing 194 n n C15 H152 CLR sing 195 n n C16 C17 CLR sing 196 n n C16 H161 CLR sing 197 n n C16 H162 CLR sing 198 n n C17 C20 CLR sing 199 n n C17 H17 CLR sing 200 n n C18 H181 CLR sing 201 n n C18 H182 CLR sing 202 n n C18 H183 CLR sing 203 n n C19 H191 CLR sing 204 n n C19 H192 CLR sing 205 n n C19 H193 CLR sing 206 n n C20 C21 CLR sing 207 n n C20 C22 CLR sing 208 n n C20 H20 CLR sing 209 n n C21 H211 CLR sing 210 n n C21 H212 CLR sing 211 n n C21 H213 CLR sing 212 n n C22 C23 CLR sing 213 n n C22 H221 CLR sing 214 n n C22 H222 CLR sing 215 n n C23 C24 CLR sing 216 n n C23 H231 CLR sing 217 n n C23 H232 CLR sing 218 n n C24 C25 CLR sing 219 n n C24 H241 CLR sing 220 n n C24 H242 CLR sing 221 n n C25 C26 CLR sing 222 n n C25 C27 CLR sing 223 n n C25 H25 CLR sing 224 n n C26 H261 CLR sing 225 n n C26 H262 CLR sing 226 n n C26 H263 CLR sing 227 n n C27 H271 CLR sing 228 n n C27 H272 CLR sing 229 n n C27 H273 CLR sing 230 n n O1 H1 CLR sing 231 n n # _atom_sites.entry_id 7VDH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 301 CLR CLR . G 7 6IB R 1 402 401 6IB LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 89.994 98.557 76.865 1 100.62 ? C1 CLR 401 R 1 HETATM 2 C C2 CLR . . . F 6 89.261 99.75 77.445 1 100.62 ? C2 CLR 401 R 1 HETATM 3 C C3 CLR . . . F 6 88.027 100.021 76.607 1 100.62 ? C3 CLR 401 R 1 HETATM 4 C C4 CLR . . . F 6 87.076 98.843 76.796 1 100.62 ? C4 CLR 401 R 1 HETATM 5 C C5 CLR . . . F 6 87.747 97.564 76.407 1 100.62 ? C5 CLR 401 R 1 HETATM 6 C C6 CLR . . . F 6 86.991 96.63 75.858 1 100.62 ? C6 CLR 401 R 1 HETATM 7 C C7 CLR . . . F 6 87.554 95.371 75.292 1 100.62 ? C7 CLR 401 R 1 HETATM 8 C C8 CLR . . . F 6 88.834 94.97 76.026 1 100.62 ? C8 CLR 401 R 1 HETATM 9 C C9 CLR . . . F 6 89.807 96.176 76.15 1 100.62 ? C9 CLR 401 R 1 HETATM 10 C C10 CLR . . . F 6 89.128 97.291 76.962 1 100.62 ? C10 CLR 401 R 1 HETATM 11 C C11 CLR . . . F 6 91.142 95.75 76.797 1 100.62 ? C11 CLR 401 R 1 HETATM 12 C C12 CLR . . . F 6 91.793 94.541 76.116 1 100.62 ? C12 CLR 401 R 1 HETATM 13 C C13 CLR . . . F 6 90.828 93.345 75.989 1 100.62 ? C13 CLR 401 R 1 HETATM 14 C C14 CLR . . . F 6 89.527 93.835 75.263 1 100.62 ? C14 CLR 401 R 1 HETATM 15 C C15 CLR . . . F 6 88.722 92.534 75.008 1 100.62 ? C15 CLR 401 R 1 HETATM 16 C C16 CLR . . . F 6 89.826 91.467 74.784 1 100.62 ? C16 CLR 401 R 1 HETATM 17 C C17 CLR . . . F 6 91.196 92.219 74.934 1 100.62 ? C17 CLR 401 R 1 HETATM 18 C C18 CLR . . . F 6 90.439 92.761 77.385 1 100.62 ? C18 CLR 401 R 1 HETATM 19 C C19 CLR . . . F 6 88.975 96.873 78.435 1 100.62 ? C19 CLR 401 R 1 HETATM 20 C C20 CLR . . . F 6 92.561 91.255 74.992 1 100.62 ? C20 CLR 401 R 1 HETATM 21 C C21 CLR . . . F 6 92.234 89.776 74.692 1 100.62 ? C21 CLR 401 R 1 HETATM 22 C C22 CLR . . . F 6 93.564 91.315 76.19 1 100.62 ? C22 CLR 401 R 1 HETATM 23 C C23 CLR . . . F 6 94.75 92.188 75.829 1 100.62 ? C23 CLR 401 R 1 HETATM 24 C C24 CLR . . . F 6 95.149 93.04 77.026 1 100.62 ? C24 CLR 401 R 1 HETATM 25 C C25 CLR . . . F 6 96.61 92.781 77.402 1 100.62 ? C25 CLR 401 R 1 HETATM 26 C C26 CLR . . . F 6 97.16 93.991 78.137 1 100.62 ? C26 CLR 401 R 1 HETATM 27 C C27 CLR . . . F 6 96.714 91.546 78.283 1 100.62 ? C27 CLR 401 R 1 HETATM 28 O O1 CLR . . . F 6 87.457 101.188 77.103 1 100.62 ? O1 CLR 401 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #