data_7VDH
#
_model_server_result.job_id            ksm1dq3Vb3jTagKdiGo0gg 
_model_server_result.datetime_utc      '2024-11-21 23:03:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":402}' 
#
_entry.id    7VDH 
#
_exptl.entry_id    7VDH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              519.718 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-methoxy-3-[[2-methoxy-3-[[2-methoxy-5-[2-(methylamino)ethyl]phenyl]methyl]-5-[2-(methylamino)ethyl]phenyl]methyl]phenyl]-~{N}-methyl-ethanamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VDH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 R CYS 26 1_555 A SG CYS 258 R CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 168 R CYS 168 1_555 A SG CYS 180 R CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 C SG CYS 139 B CYS 121 1_555 C SG CYS 167 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf4 E SG CYS 197 S CYS 147 1_555 E SG CYS 267 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C32 H45 N3 O3' 
_chem_comp.formula_weight    519.718 
_chem_comp.id                6IB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-methoxy-3-[[2-methoxy-3-[[2-methoxy-5-[2-(methylamino)ethyl]phenyl]methyl]-5-[2-(methylamino)ethyl]phenyl]methyl]phenyl]-~{N}-methyl-ethanamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C33 O1 6IB sing 1 n n 
C25 C31 6IB sing 2 n n 
C25 C21 6IB sing 3 n n 
C31 N5 6IB sing 4 n n 
C19 C21 6IB doub 5 n y 
C19 C16 6IB sing 6 n y 
C9 C16 6IB sing 7 n n 
C9 C7 6IB sing 8 n n 
C21 C27 6IB sing 9 n y 
N5 C37 6IB sing 10 n n 
C16 C23 6IB doub 11 n y 
O1 C12 6IB sing 12 n n 
C7 C12 6IB doub 13 n y 
C7 C13 6IB sing 14 n y 
C12 C8 6IB sing 15 n y 
C27 C29 6IB doub 16 n y 
C13 C11 6IB doub 17 n y 
C23 C29 6IB sing 18 n y 
C23 O2 6IB sing 19 n n 
C8 C10 6IB sing 20 n n 
C8 C14 6IB doub 21 n y 
C11 C14 6IB sing 22 n y 
C11 C15 6IB sing 23 n n 
O2 C35 6IB sing 24 n n 
C10 C17 6IB sing 25 n n 
C15 C18 6IB sing 26 n n 
O3 C36 6IB sing 27 n n 
O3 C24 6IB sing 28 n n 
C17 C24 6IB doub 29 n y 
C17 C20 6IB sing 30 n y 
C34 N4 6IB sing 31 n n 
C24 C30 6IB sing 32 n y 
C20 C22 6IB doub 33 n y 
C18 N4 6IB sing 34 n n 
C30 C28 6IB doub 35 n y 
C22 C28 6IB sing 36 n y 
C22 C26 6IB sing 37 n n 
C38 N6 6IB sing 38 n n 
C32 C26 6IB sing 39 n n 
C32 N6 6IB sing 40 n n 
C10 H1 6IB sing 41 n n 
C10 H2 6IB sing 42 n n 
C13 H3 6IB sing 43 n n 
C15 H4 6IB sing 44 n n 
C15 H5 6IB sing 45 n n 
C20 H6 6IB sing 46 n n 
C26 H7 6IB sing 47 n n 
C26 H8 6IB sing 48 n n 
C28 H9 6IB sing 49 n n 
C9 H10 6IB sing 50 n n 
C9 H11 6IB sing 51 n n 
C14 H12 6IB sing 52 n n 
C18 H13 6IB sing 53 n n 
C18 H14 6IB sing 54 n n 
C19 H15 6IB sing 55 n n 
C25 H16 6IB sing 56 n n 
C25 H17 6IB sing 57 n n 
C27 H18 6IB sing 58 n n 
C29 H19 6IB sing 59 n n 
C30 H20 6IB sing 60 n n 
C31 H21 6IB sing 61 n n 
C31 H22 6IB sing 62 n n 
C32 H23 6IB sing 63 n n 
C32 H24 6IB sing 64 n n 
C33 H25 6IB sing 65 n n 
C33 H26 6IB sing 66 n n 
C33 H27 6IB sing 67 n n 
C34 H28 6IB sing 68 n n 
C34 H29 6IB sing 69 n n 
C34 H30 6IB sing 70 n n 
C35 H31 6IB sing 71 n n 
C35 H32 6IB sing 72 n n 
C35 H33 6IB sing 73 n n 
C36 H34 6IB sing 74 n n 
C36 H35 6IB sing 75 n n 
C36 H36 6IB sing 76 n n 
C37 H37 6IB sing 77 n n 
C37 H38 6IB sing 78 n n 
C37 H39 6IB sing 79 n n 
C38 H40 6IB sing 80 n n 
C38 H41 6IB sing 81 n n 
C38 H42 6IB sing 82 n n 
N4 H43 6IB sing 83 n n 
N5 H45 6IB sing 84 n n 
N6 H47 6IB sing 85 n n 
#
_atom_sites.entry_id                     7VDH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 CLR R 1 401 301 CLR CLR . 
G 7 6IB R 1 402 401 6IB LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 6IB . . . G 7 101.494 67.74 82.475 1 135.11 ? C10 6IB 402 R 1 
HETATM 2 C C13 6IB . . . G 7 97.2 67.434 81.752 1 135.11 ? C13 6IB 402 R 1 
HETATM 3 C C15 6IB . . . G 7 96.734 69.287 83.433 1 135.11 ? C15 6IB 402 R 1 
HETATM 4 C C17 6IB . . . G 7 102.068 66.821 83.545 1 135.11 ? C17 6IB 402 R 1 
HETATM 5 C C20 6IB . . . G 7 101.308 66.271 84.601 1 135.11 ? C20 6IB 402 R 1 
HETATM 6 C C21 6IB . . . G 7 98.329 61.87 80.321 1 135.11 ? C21 6IB 402 R 1 
HETATM 7 C C22 6IB . . . G 7 101.835 65.411 85.597 1 135.11 ? C22 6IB 402 R 1 
HETATM 8 C C24 6IB . . . G 7 103.435 66.475 83.488 1 135.11 ? C24 6IB 402 R 1 
HETATM 9 C C26 6IB . . . G 7 101.005 64.829 86.733 1 135.11 ? C26 6IB 402 R 1 
HETATM 10 C C28 6IB . . . G 7 103.196 65.11 85.482 1 135.11 ? C28 6IB 402 R 1 
HETATM 11 C C7 6IB . . . G 7 97.99 66.562 81.012 1 135.11 ? C7 6IB 402 R 1 
HETATM 12 C C8 6IB . . . G 7 99.986 67.565 82.144 1 135.11 ? C8 6IB 402 R 1 
HETATM 13 C C9 6IB . . . G 7 97.242 65.612 80.079 1 135.11 ? C9 6IB 402 R 1 
HETATM 14 C C11 6IB . . . G 7 97.694 68.361 82.667 1 135.11 ? C11 6IB 402 R 1 
HETATM 15 C C12 6IB . . . G 7 99.417 66.629 81.208 1 135.11 ? C12 6IB 402 R 1 
HETATM 16 C C14 6IB . . . G 7 99.085 68.392 82.829 1 135.11 ? C14 6IB 402 R 1 
HETATM 17 C C16 6IB . . . G 7 97.286 64.14 80.481 1 135.11 ? C16 6IB 402 R 1 
HETATM 18 C C18 6IB . . . G 7 97.093 69.7 84.899 1 135.11 ? C18 6IB 402 R 1 
HETATM 19 C C19 6IB . . . G 7 98.25 63.237 79.97 1 135.11 ? C19 6IB 402 R 1 
HETATM 20 C C23 6IB . . . G 7 96.353 63.62 81.409 1 135.11 ? C23 6IB 402 R 1 
HETATM 21 C C25 6IB . . . G 7 99.374 60.902 79.754 1 135.11 ? C25 6IB 402 R 1 
HETATM 22 C C27 6IB . . . G 7 97.367 61.421 81.242 1 135.11 ? C27 6IB 402 R 1 
HETATM 23 C C29 6IB . . . G 7 96.4 62.271 81.776 1 135.11 ? C29 6IB 402 R 1 
HETATM 24 C C30 6IB . . . G 7 103.982 65.625 84.453 1 135.11 ? C30 6IB 402 R 1 
HETATM 25 C C31 6IB . . . G 7 99.183 59.384 80.076 1 135.11 ? C31 6IB 402 R 1 
HETATM 26 C C32 6IB . . . G 7 99.472 64.716 86.512 1 135.11 ? C32 6IB 402 R 1 
HETATM 27 C C33 6IB . . . G 7 100.783 66.172 79.206 1 135.11 ? C33 6IB 402 R 1 
HETATM 28 C C34 6IB . . . G 7 97.885 71.927 84.176 1 135.11 ? C34 6IB 402 R 1 
HETATM 29 C C35 6IB . . . G 7 95.48 64.513 83.379 1 135.11 ? C35 6IB 402 R 1 
HETATM 30 C C36 6IB . . . G 7 105.53 67.328 82.738 1 135.11 ? C36 6IB 402 R 1 
HETATM 31 C C37 6IB . . . G 7 98.715 58.039 82.111 1 135.11 ? C37 6IB 402 R 1 
HETATM 32 C C38 6IB . . . G 7 97.544 63.203 86.935 1 135.11 ? C38 6IB 402 R 1 
HETATM 33 N N4 6IB . . . G 7 98.152 70.748 85.023 1 135.11 ? N4 6IB 402 R 1 
HETATM 34 N N5 6IB . . . G 7 99.636 58.997 81.456 1 135.11 ? N5 6IB 402 R 1 
HETATM 35 N N6 6IB . . . G 7 98.821 63.736 87.433 1 135.11 ? N6 6IB 402 R 1 
HETATM 36 O O1 6IB . . . G 7 100.255 65.759 80.494 1 135.11 ? O1 6IB 402 R 1 
HETATM 37 O O2 6IB . . . G 7 95.385 64.418 81.966 1 135.11 ? O2 6IB 402 R 1 
HETATM 38 O O3 6IB . . . G 7 104.179 66.991 82.468 1 135.11 ? O3 6IB 402 R 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#